Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001163

Physical Location & Seq

Genomic Coordinates Reverse (-)

2651015 .. 2653208

Gene Structure 2194 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G05140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1260 bp

ATGGTGGCTAGGTTCGAGAATCAAGCTCCTGAAAATCTTCACGGGAAGTATCAAGCAATGGTTGTTTGCTGTATTCTTGGAATCGGATCTCTTGTTTCTTGGAACAGCCTGCTCAGTGTCGGAGATTACTACTACCAAGTTTTTCCGGATTACCATCCTTCAAGAGTACTCACATTCGTATACCAACCATTTTCGATTGGAACAATCGTGATTTTCGCTTACAATGAATCGAAAATCAATACTCGAAAACGTAACCTGATTGGTTACATTGTATTTACAACATCCATATTCTTGCTCATCATTTTGGATTTGGCAACAAAAGGACACGGTGGGATCGGACCTTATATTGTTTTATGCGCAATCGTTGGTTCATTTGGCTTCGCGGATGCTTCTGTACGAGGAGGAATGATCGGAGACTTATCGTTGATGTGCCCTGAACTCATTCAGTCATTCGTAGCGGGTTTGGCTGTAGCTGGAGCTCTAACATCAGCATTTAGGCTGATAACTAAAGCAGCTTTTGAGAAAACACATGACGGTCTAAGAAAAGGAGCAATGATCTTTTTAGCTATCTCCACATTGGTAGAGTTTCTATGTGTTCTGCTATACGCATATGTGTTCCCGAAACTTCCAATTGTTAAATACTACCGAAGTAAAGCTGCTTCTGAAGGATCCAAAACTGTTTATGCTGATCTTGCTGCTGCTGGTATCCAAAACCAATCAGTTTTGACTGCTGATGATGTTTCCAAGGATAAACGGCTAAACAACAAAGAGCTGTTGCTTGAAAATGTAGATTATGTAGTGAATTTATTTCTCATCTATGTTTTGACACTATCCATTTTGCCCGGGTTCTTATACGAGAACACGGGACAACACGGGCTAGGCTCGTGGTATGCGCTTGTCCTAATAGCAATGTACAATTGGTGGGATTTAGTTGGGAGGTACATACCGATGGTGAAATGGCTAAATGTTGAGAACAGAAAAGGACTAACCGTCGCGGTTTTAACCCGGTTTCTCCTCGTTCCGGCTTTCTACTTCACTGCAAAATATGGTGATCAAGGATGGATGATTTTGCTCGTTTCCATTTTGGGATTAACTAATGGACATCTCACTGTTTGCATTCTTGCCAAAGCTCCTAGAGGATACACGGGCCCGGAGAAGAATGCGTTAGGAAATTTGCTGGTGCTATTTATATTATGGGGAGCATTTGTAGGATGTGCTTTGGGTTGGTTATGGCTTATTGGTAAGAAAAATGCCTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005337 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0015858 GO:0015931 GO:0015932 GO:0016020 GO:0022857 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:1901264 GO:1901505 GO:1901642

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nucleoside_tran

Protein Analysis

419

Amino Acids

46.29

Weight (kDa)

9.04

Isoelectric Point (pI)

23.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nucleoside_tran	PF01733	123 - 411	9e-30	Nucleoside transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001163)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61630 AT4G05110 AT4G05110 AT4G05110 AT4G05120 AT4G05120 AT4G05130 AT4G05140
fragaria_vesca	FvH4_3g03740 FvH4_3g03740 FvH4_3g03740 FvH4_3g03740 FvH4_3g03750 FvH4_5g10501
malus_domestica	MD05G1326900.v1.1 MD10G1305000.v1.1
prunus_persica	Prupe.4G034600_v2.0.a1
pyrus_communis	pycom05g30120 pycom10g25750
rosa_chinensis	RchiOBHm_Chr5g0005801 RchiOBHm_Chr5g0005811 RchiOBHm_Chr5g0005821 RchiOBHm_Chr7g0187631
rosa_laevigata	RLG00000004764 RLG00000031327 RLG00000031328 RLG00000031329
rosa_multiflora	Rmu_sc0002694.1_g000001
rosa_roxburghii	Rroxscaffold_1G00070040 Rroxscaffold_1G00070050 Rroxscaffold_1G00070060 Rroxscaffold_3G00267210
rosa_rugosa	Rorug04G0418200 Rorug04G0418300 Rorug04G0418400 Rorug04G0418500 Rorug04G0418500 Rorug04G0418600 Rorug04G0418700 Rorug06G0483300
rosa_samantha	Rh5AG045700 Rh5AG045800 Rh5AG045900 Rh5BG044400 Rh5BG044600 Rh5CG053200 Rh5CG053400 Rh5CG053500 Rh5DG044300 Rh7AG088200 Rh7BG089500 Rh7CG088800 Rh7DG090500
rosa_wichuraiana	Rw0G002660 Rw5G004600 Rw5G004610 Rw5G004620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	358
AccI	GTMKAC	1 cut(s)	180
AccII	CGCG	2 cut(s)	383, 995
AccIII	TCCGGA	1 cut(s)	145
AciI	CCGC	3 cut(s)	383, 458, 995
AclWI	GGATC	4 cut(s)	94, 341, 663, 676
AcsI	RAATTY	2 cut(s)	802, 1171
AcuI	CTGAAG	1 cut(s)	684
AfaI	GTAC	4 cut(s)	168, 396, 914, 941
AfiI	CCNNNNNNNGG	1 cut(s)	1021
AgsI	TTSAA	2 cut(s)	162, 782
AhdI	GACNNNNNGTC	1 cut(s)	989
AluBI	AGCT	8 cut(s)	26, 473, 479, 515, 566, 656, 772, 1130
AluI	AGCT	8 cut(s)	26, 473, 479, 515, 566, 656, 772, 1130
Alw21I	GWGCWC	1 cut(s)	481
Alw26I	GTCTC	1 cut(s)	408
AlwI	GGATC	4 cut(s)	94, 341, 663, 676
Ama87I	CYCGRG	1 cut(s)	842
Aor13HI	TCCGGA	1 cut(s)	145
AoxI	GGCC	1 cut(s)	1147
ApaI	GGGCCC	1 cut(s)	1151
ApeKI	GCWGC	4 cut(s)	512, 656, 695, 698
ApoI	RAATTY	2 cut(s)	802, 1171
Asp700I	GAANNNNTTC	2 cut(s)	36, 441
AspLEI	GCGC	2 cut(s)	359, 895
AspS9I	GGNCC	3 cut(s)	338, 1147, 1148
AsuC2I	CCSGG	4 cut(s)	843, 844, 1006, 1151
AsuHPI	GGTGA	2 cut(s)	964, 1061
AvaI	CYCGRG	1 cut(s)	842
AvaII	GGWCC	1 cut(s)	338
BaeGI	GKGCMC	2 cut(s)	434, 1151
BamHI	GGATCC	1 cut(s)	668
BanII	GRGCYC	2 cut(s)	481, 1151
BarI	GAAGNNNNNNTAC	2 cut(s)	643, 675
BauI	CACGAG	1 cut(s)	883
Bbv12I	GWGCWC	1 cut(s)	481
BbvI	GCAGC	4 cut(s)	524, 643, 682, 685
BccI	CCATC	3 cut(s)	162, 943, 1053
BceAI	ACGGC	1 cut(s)	770
BciVI	GTATCC	2 cut(s)	716, 1133
BclI	TGATCA	1 cut(s)	1051
BcnI	CCSGG	4 cut(s)	843, 844, 1006, 1151
BcoDI	GTCTC	1 cut(s)	408
BfaI	CTAG	3 cut(s)	9, 878, 1134
BfmI	CTRYAG	1 cut(s)	468
BfuI	GTATCC	2 cut(s)	716, 1133
BisI	GCNGC	4 cut(s)	513, 657, 696, 699
BlsI	GCNGC	4 cut(s)	514, 658, 697, 700
BmcAI	AGTACT	1 cut(s)	168
Bme1390I	CCNGG	4 cut(s)	843, 844, 1006, 1151
Bme18I	GGWCC	1 cut(s)	338
BmeRI	GACNNNNNGTC	1 cut(s)	989
BmeT110I	CYCGRG	1 cut(s)	842
BmgT120I	GGNCC	3 cut(s)	338, 1147, 1148
BmiI	GGNNCC	2 cut(s)	670, 1149
BmrFI	CCNGG	4 cut(s)	843, 844, 1006, 1151
BmsI	GCATC	1 cut(s)	376
BpmI	CTGGAG	1 cut(s)	495
BpuMI	CCSGG	4 cut(s)	843, 844, 1006, 1151
BsaBI	GATNNNNATC	1 cut(s)	153
BsaJI	CCNNGG	2 cut(s)	744, 842
BsaWI	WCCGGW	1 cut(s)	145
BsaXI	ACNNNNNCTCC	2 cut(s)	1191, 1221
Bsc4I	CCNNNNNNNGG	1 cut(s)	1021
Bse3DI	GCAATG	3 cut(s)	63, 558, 915
Bse8I	GATNNNNATC	1 cut(s)	153
BseAI	TCCGGA	1 cut(s)	145
BseDI	CCNNGG	2 cut(s)	744, 842
BseGI	GGATG	6 cut(s)	154, 281, 391, 1064, 1068, 1217
BseJI	GATNNNNATC	1 cut(s)	153
BseLI	CCNNNNNNNGG	1 cut(s)	1021
BseMI	GCAATG	3 cut(s)	63, 558, 915
BseMII	CTCAG	1 cut(s)	127
BseRI	GAGGAG	2 cut(s)	414, 1004
BseSI	GKGCMC	2 cut(s)	434, 1151
BseXI	GCAGC	4 cut(s)	524, 643, 682, 685
Bsh1236I	CGCG	2 cut(s)	383, 995
BshFI	GGCC	1 cut(s)	1149
BsiHKAI	GWGCWC	1 cut(s)	481
BsiHKCI	CYCGRG	1 cut(s)	842
BsiSI	CCGG	5 cut(s)	146, 843, 1006, 1022, 1151
BslFI	GGGAC	1 cut(s)	879
BslI	CCNNNNNNNGG	1 cut(s)	1021
BsmAI	GTCTC	1 cut(s)	408
BsmFI	GGGAC	1 cut(s)	879
BsmI	GAATGC	2 cut(s)	1116, 1165
BsnI	GGCC	1 cut(s)	1149
BsoBI	CYCGRG	1 cut(s)	842
Bsp120I	GGGCCC	1 cut(s)	1147
Bsp1286I	GDGCHC	3 cut(s)	434, 481, 1151
Bsp13I	TCCGGA	1 cut(s)	145
Bsp1407I	TGTACA	1 cut(s)	912
Bsp143I	GATC	7 cut(s)	86, 333, 408, 555, 668, 688, 1051
BspACI	CCGC	3 cut(s)	383, 458, 995
BspANI	GGCC	1 cut(s)	1149
BspCNI	CTCAG	1 cut(s)	126
BspEI	TCCGGA	1 cut(s)	145
BspFNI	CGCG	2 cut(s)	383, 995
BspLI	GGNNCC	2 cut(s)	670, 1149
BspPI	GGATC	4 cut(s)	94, 341, 663, 676
BsrDI	GCAATG	3 cut(s)	63, 558, 915
BsrGI	TGTACA	1 cut(s)	912
BssECI	CCNNGG	2 cut(s)	744, 842
BssMI	GATC	7 cut(s)	86, 333, 408, 555, 668, 688, 1051
BssNAI	GTATAC	1 cut(s)	181
BssSI	CACGAG	1 cut(s)	883
BssT1I	CCWWGG	1 cut(s)	744
Bst1107I	GTATAC	1 cut(s)	181
Bst2BI	CACGAG	1 cut(s)	883
Bst4CI	ACNGT	5 cut(s)	329, 536, 679, 991, 1111
BstAUI	TGTACA	1 cut(s)	912
BstC8I	GCNNGC	1 cut(s)	110
BstDEI	CTNAG	2 cut(s)	113, 539
BstF5I	GGATG	6 cut(s)	154, 281, 391, 1064, 1068, 1217
BstFNI	CGCG	2 cut(s)	383, 995
BstHHI	GCGC	2 cut(s)	359, 895
BstKTI	GATC	7 cut(s)	89, 336, 411, 558, 671, 691, 1054
BstMAI	GTCTC	1 cut(s)	408
BstMBI	GATC	7 cut(s)	86, 333, 408, 555, 668, 688, 1051
BstMWI	GCNNNNNNNGC	2 cut(s)	464, 692
BstSCI	CCNGG	4 cut(s)	841, 842, 1004, 1149
BstSFI	CTRYAG	1 cut(s)	468
BstSLI	GKGCMC	2 cut(s)	434, 1151
BstUI	CGCG	2 cut(s)	383, 995
BstV1I	GCAGC	4 cut(s)	524, 643, 682, 685
BstX2I	RGATCY	2 cut(s)	86, 668
BstYI	RGATCY	2 cut(s)	86, 668
BstZ17I	GTATAC	1 cut(s)	181
BsuI	GTATCC	2 cut(s)	716, 1133
BsuRI	GGCC	1 cut(s)	1149
BtsCI	GGATG	6 cut(s)	154, 281, 391, 1064, 1068, 1217
BtsI	GCAGTG	1 cut(s)	1035
BtsIMutI	CAGTG	3 cut(s)	121, 1035, 1107
Cac8I	GCNNGC	1 cut(s)	110
CfoI	GCGC	2 cut(s)	359, 895
Cfr13I	GGNCC	3 cut(s)	338, 1147, 1148
Cfr9I	CCCGGG	1 cut(s)	842
Csp6I	GTAC	4 cut(s)	167, 395, 913, 940
CviAII	CATG	1 cut(s)	530
CviQI	GTAC	4 cut(s)	167, 395, 913, 940
DdeI	CTNAG	2 cut(s)	113, 539
DpnI	GATC	7 cut(s)	88, 335, 410, 557, 670, 690, 1053
DpnII	GATC	7 cut(s)	86, 333, 408, 555, 668, 688, 1051
DriI	GACNNNNNGTC	1 cut(s)	989
Eam1105I	GACNNNNNGTC	1 cut(s)	989
Ecl136II	GAGCTC	1 cut(s)	479
Eco130I	CCWWGG	1 cut(s)	744
Eco24I	GRGCYC	2 cut(s)	481, 1151
Eco47I	GGWCC	1 cut(s)	338
Eco53kI	GAGCTC	1 cut(s)	479
Eco57I	CTGAAG	1 cut(s)	684
Eco88I	CYCGRG	1 cut(s)	842
EcoICRI	GAGCTC	1 cut(s)	479
EcoT14I	CCWWGG	1 cut(s)	744
EcoT38I	GRGCYC	2 cut(s)	481, 1151
ErhI	CCWWGG	1 cut(s)	744
FaeI	CATG	1 cut(s)	533
FaqI	GGGAC	1 cut(s)	879
FatI	CATG	1 cut(s)	529
FauI	CCCGC	1 cut(s)	451
FauNDI	CATATG	1 cut(s)	610
FbaI	TGATCA	1 cut(s)	1051
FblI	GTMKAC	1 cut(s)	180
Fnu4HI	GCNGC	4 cut(s)	513, 657, 696, 699
FokI	GGATG	6 cut(s)	141, 268, 398, 1071, 1075, 1224
FriOI	GRGCYC	2 cut(s)	481, 1151
Fsp4HI	GCNGC	4 cut(s)	513, 657, 696, 699
FspBI	CTAG	3 cut(s)	9, 878, 1134
FspI	TGCGCA	1 cut(s)	358
GlaI	GCGC	2 cut(s)	358, 894
GluI	GCNGC	4 cut(s)	513, 657, 696, 699
GsuI	CTGGAG	1 cut(s)	495
HaeIII	GGCC	1 cut(s)	1149
HapII	CCGG	5 cut(s)	146, 843, 1006, 1022, 1151
HhaI	GCGC	2 cut(s)	359, 895
Hin1II	CATG	1 cut(s)	533
Hin6I	GCGC	2 cut(s)	357, 893
HinP1I	GCGC	2 cut(s)	357, 893
HinfI	GANTC	3 cut(s)	19, 81, 227
HpaII	CCGG	5 cut(s)	146, 843, 1006, 1022, 1151
HphI	GGTGA	2 cut(s)	964, 1061
Hpy166II	GTNNAC	1 cut(s)	181
Hpy188I	TCNGA	6 cut(s)	86, 122, 338, 413, 664, 1259
Hpy188III	TCNNGA	6 cut(s)	16, 29, 146, 162, 208, 619
Hpy8I	GTNNAC	1 cut(s)	181
Hpy99I	CGWCG	1 cut(s)	995
HpyAV	CCTTC	2 cut(s)	168, 659
HpyCH4III	ACNGT	5 cut(s)	329, 536, 679, 991, 1111
HpyCH4IV	ACGT	1 cut(s)	250
HpyCH4V	TGCA	2 cut(s)	1040, 1116
HpyF10VI	GCNNNNNNNGC	2 cut(s)	464, 692
HpyF3I	CTNAG	2 cut(s)	113, 539
HpySE526I	ACGT	1 cut(s)	250
Hsp92II	CATG	1 cut(s)	533
HspAI	GCGC	2 cut(s)	357, 893
Kpn2I	TCCGGA	1 cut(s)	145
Ksp22I	TGATCA	1 cut(s)	1051
Kzo9I	GATC	7 cut(s)	86, 333, 408, 555, 668, 688, 1051
LmnI	GCTCC	5 cut(s)	31, 476, 548, 1135, 1199
Lsp1109I	GCAGC	4 cut(s)	524, 643, 682, 685
LweI	GCATC	1 cut(s)	376
MaeI	CTAG	3 cut(s)	9, 878, 1134
MaeII	ACGT	1 cut(s)	250
MaeIII	GTNAC	2 cut(s)	251, 263
MalI	GATC	7 cut(s)	88, 335, 410, 557, 670, 690, 1053
MboI	GATC	7 cut(s)	86, 333, 408, 555, 668, 688, 1051
MboII	GAAGA	2 cut(s)	29, 1168
MfeI	CAATTG	2 cut(s)	630, 916
MflI	RGATCY	2 cut(s)	86, 668
MhlI	GDGCHC	3 cut(s)	434, 481, 1151
MluCI	AATT	4 cut(s)	630, 802, 916, 1171
MmeI	TCCRAC	1 cut(s)	100
MnlI	CCTC	5 cut(s)	392, 395, 930, 1025, 1130
MroI	TCCGGA	1 cut(s)	145
MroXI	GAANNNNTTC	2 cut(s)	36, 441
MseI	TTAA	3 cut(s)	636, 1001, 1091
MslI	CAYNNNNRTG	1 cut(s)	947
MspI	CCGG	5 cut(s)	146, 843, 1006, 1022, 1151
MspR9I	CCNGG	4 cut(s)	843, 844, 1006, 1151
MunI	CAATTG	2 cut(s)	630, 916
Mva1269I	GAATGC	2 cut(s)	1116, 1165
MvnI	CGCG	2 cut(s)	383, 995
MwoI	GCNNNNNNNGC	2 cut(s)	464, 692
NciI	CCSGG	4 cut(s)	843, 844, 1006, 1151
NdeI	CATATG	1 cut(s)	610
NdeII	GATC	7 cut(s)	86, 333, 408, 555, 668, 688, 1051
NlaIII	CATG	1 cut(s)	533
NlaIV	GGNNCC	2 cut(s)	670, 1149
NsbI	TGCGCA	1 cut(s)	358
PctI	GAATGC	2 cut(s)	1116, 1165
PdmI	GAANNNNTTC	2 cut(s)	36, 441
PfeI	GAWTC	3 cut(s)	19, 81, 227
PkrI	GCNGC	4 cut(s)	514, 658, 697, 700
Psp124BI	GAGCTC	1 cut(s)	481
PspN4I	GGNNCC	2 cut(s)	670, 1149
PspOMI	GGGCCC	1 cut(s)	1147
PspPI	GGNCC	3 cut(s)	338, 1147, 1148
PsuI	RGATCY	2 cut(s)	86, 668
RsaI	GTAC	4 cut(s)	168, 396, 914, 941
RsaNI	GTAC	4 cut(s)	167, 395, 913, 940
RseI	CAYNNNNRTG	1 cut(s)	947
SacI	GAGCTC	1 cut(s)	481
SaqAI	TTAA	3 cut(s)	636, 1001, 1091
SatI	GCNGC	4 cut(s)	513, 657, 696, 699
Sau3AI	GATC	7 cut(s)	86, 333, 408, 555, 668, 688, 1051
Sau96I	GGNCC	3 cut(s)	338, 1147, 1148
ScaI	AGTACT	1 cut(s)	168
ScrFI	CCNGG	4 cut(s)	843, 844, 1006, 1151
SduI	GDGCHC	3 cut(s)	434, 481, 1151
SfaNI	GCATC	1 cut(s)	376
SfcI	CTRYAG	1 cut(s)	468
SinI	GGWCC	1 cut(s)	338
SmaI	CCCGGG	1 cut(s)	844
SmiMI	CAYNNNNRTG	1 cut(s)	947
Sse9I	AATT	4 cut(s)	630, 802, 916, 1171
SsiI	CCGC	3 cut(s)	383, 458, 995
SspMI	CTAG	3 cut(s)	9, 878, 1134
SstI	GAGCTC	1 cut(s)	481
StyD4I	CCNGG	4 cut(s)	841, 842, 1004, 1149
StyI	CCWWGG	1 cut(s)	744
TaaI	ACNGT	5 cut(s)	329, 536, 679, 991, 1111
TaiI	ACGT	1 cut(s)	253
TaqI	TCGA	4 cut(s)	15, 194, 230, 244
TasI	AATT	4 cut(s)	630, 802, 916, 1171
TatI	WGTACW	2 cut(s)	166, 912
TfiI	GAWTC	3 cut(s)	19, 81, 227
Tru1I	TTAA	3 cut(s)	636, 1001, 1091
Tru9I	TTAA	3 cut(s)	636, 1001, 1091
TscAI	CASTG	3 cut(s)	121, 1042, 1114
TseI	GCWGC	4 cut(s)	512, 656, 695, 698
TspDTI	ATGAA	2 cut(s)	240, 360
TspMI	CCCGGG	1 cut(s)	842
TspRI	CASTG	3 cut(s)	121, 1042, 1114
VpaK11BI	GGWCC	1 cut(s)	338
XapI	RAATTY	2 cut(s)	802, 1171
XmaI	CCCGGG	1 cut(s)	842
XmiI	GTMKAC	1 cut(s)	180
XmnI	GAANNNNTTC	2 cut(s)	36, 441
XspI	CTAG	3 cut(s)	9, 878, 1134
ZrmI	AGTACT	1 cut(s)	168

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.