Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0001163

Physical Location & Seq

Genomic Coordinates Forward (+)

3812442 .. 3816140

Gene Structure 3699 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG053200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1188 bp

ATGGCAATTTGTTGGCTCCTCGGACTAGGGTCCTTAGTCGCATGGAACAGTGTTCTGACTATAGGTGATTACTATGGAATTTTGTTTCCGAAATACCATCCTTCGAGGGTTCTGACCCTCGTTTATCAACCATTTGCATTTATATCAATGGGAATACTAGCATACAAGGAGGCAACCGTTAATACCAGAAAGAGGATCTTAATTGGATACACTCTCTTCTTTCTTGGTACCTTGATGATGATAGTTGTGGATGTTGCTACATCTGGCAGAGGAGGAATTGGACCTTATATTGGTATATGTGCAATGGTTGGTGTATTTGGGGTTGCAGATGGTCATGTTCAAGGTGGAGTCATTGGTGATTTATCCTTGATGCGCCCTGAGTTCATCCAGTCCTTCTTTGGTGGCTTGGCTGCATCAGGTGCTCTAACCTCTGCCTTGAGGCTGATGACAAGGGCTGCCTTTGAGAAGTATCATGATGGTCTTCGCAAGGGAACAATGATGTTCTTGGCCCTTTCCACATTCATCGAGTTCCTGTGTATATTTCTGTATGCAATTTACTTCTCTAAGTTACCTATAGTAAAGTATTACCGCTCAAAGGCAGCCTCGGAAGGCTCCAAAACTGTAATGGCTGATCTTGCTGCCGGTGGCATCCAAACACAAGTAGACGTAGAAGCAATTCCACAACGATTGACCACTAAGCAATTATTCATTCAGAATTATGATTATGCACTTGGCTTGTTTCTGATATATGCATTGACATTATCAATCTTCCCTGGTTTCATTTTTGAAAACACTGGAGAACACCAATTGGGCACATGGTATCCCCTTGTTTTGATCGCAATGTACAACGTGTTGGATTTTATATCGAGATACACACCTCTTATACCATGCTTGAAGATTGAAAACAGAAAGGGCCTCATGGTTGCAATTGGACTGCGTTTTCTCTTCGTTCCAGCGTTCTTCTTCACCGCAAAATACGCTGACCAAGGTTGGATGATCCTGCTCACCTCAATCTTGGGTTTTACAAATGGTCATCTTACTGTTTGTCTCATGACAGTGGCACCAAAAGGTTACACGGGACCTGAGCAGAATGCCTTGGGCAATGTCCTTGCTTTCTGCCTTATGTGCGGCATATTTGCCGGGGTTTTACTCGATTGGTTATGGCTCATCGGGAACGGCAAATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005337 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0015858 GO:0015931 GO:0015932 GO:0016020 GO:0022857 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:1901264 GO:1901505 GO:1901642

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nucleoside_tran

Protein Analysis

395

Amino Acids

43.57

Weight (kDa)

8.93

Isoelectric Point (pI)

27.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nucleoside_tran	PF01733	101 - 388	2.7e-28	Nucleoside transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001163)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61630 AT4G05110 AT4G05110 AT4G05110 AT4G05120 AT4G05120 AT4G05130 AT4G05140
fragaria_vesca	FvH4_3g03740 FvH4_3g03740 FvH4_3g03740 FvH4_3g03740 FvH4_3g03750 FvH4_5g10501
malus_domestica	MD05G1326900.v1.1 MD10G1305000.v1.1
prunus_persica	Prupe.4G034600_v2.0.a1
pyrus_communis	pycom05g30120 pycom10g25750
rosa_chinensis	RchiOBHm_Chr5g0005801 RchiOBHm_Chr5g0005811 RchiOBHm_Chr5g0005821 RchiOBHm_Chr7g0187631
rosa_laevigata	RLG00000004764 RLG00000031327 RLG00000031328 RLG00000031329
rosa_multiflora	Rmu_sc0002694.1_g000001
rosa_roxburghii	Rroxscaffold_1G00070040 Rroxscaffold_1G00070050 Rroxscaffold_1G00070060 Rroxscaffold_3G00267210
rosa_rugosa	Rorug04G0418200 Rorug04G0418300 Rorug04G0418400 Rorug04G0418500 Rorug04G0418500 Rorug04G0418600 Rorug04G0418700 Rorug06G0483300
rosa_samantha	Rh5AG045700 Rh5AG045800 Rh5AG045900 Rh5BG044400 Rh5BG044600 Rh5CG053200 Rh5CG053400 Rh5CG053500 Rh5DG044300 Rh7AG088200 Rh7BG089500 Rh7CG088800 Rh7DG090500
rosa_wichuraiana	Rw0G002660 Rw5G004600 Rw5G004610 Rw5G004620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	227
AccB1I	GGYRCC	2 cut(s)	227, 1060
AccBSI	CCGCTC	1 cut(s)	591
AccI	GTMKAC	1 cut(s)	663
AciI	CCGC	3 cut(s)	589, 969, 1128
AclWI	GGATC	2 cut(s)	203, 991
AcsI	RAATTY	2 cut(s)	78, 1181
AfaI	GTAC	2 cut(s)	229, 845
AfiI	CCNNNNNNNGG	3 cut(s)	192, 290, 595
AflIII	ACRYGT	1 cut(s)	849
AgsI	TTSAA	4 cut(s)	341, 788, 895, 902
AjnI	CCWGG	1 cut(s)	772
Alw21I	GWGCWC	1 cut(s)	424
Alw26I	GTCTC	1 cut(s)	1052
AlwI	GGATC	2 cut(s)	203, 991
AoxI	GGCC	2 cut(s)	507, 913
ApeKI	GCWGC	4 cut(s)	410, 455, 599, 638
ApoI	RAATTY	2 cut(s)	78, 1181
Asp700I	GAANNNNTTC	1 cut(s)	675
Asp718I	GGTACC	1 cut(s)	227
AspLEI	GCGC	1 cut(s)	375
AspS9I	GGNCC	5 cut(s)	30, 281, 508, 913, 1079
AsuC2I	CCSGG	1 cut(s)	1141
AsuHPI	GGTGA	4 cut(s)	77, 368, 958, 997
AvaII	GGWCC	3 cut(s)	30, 281, 1079
BaeGI	GKGCMC	1 cut(s)	815
BanI	GGYRCC	2 cut(s)	227, 1060
BbsI	GAAGAC	1 cut(s)	473
Bbv12I	GWGCWC	1 cut(s)	424
BbvI	GCAGC	4 cut(s)	397, 442, 611, 625
BccI	CCATC	3 cut(s)	105, 323, 470
BciT130I	CCWGG	1 cut(s)	774
BciVI	GTATCC	2 cut(s)	200, 831
BcnI	CCSGG	1 cut(s)	1141
BcoDI	GTCTC	1 cut(s)	1052
BfaI	CTAG	2 cut(s)	26, 158
BfmI	CTRYAG	2 cut(s)	60, 573
BfuI	GTATCC	2 cut(s)	200, 831
BisI	GCNGC	5 cut(s)	411, 456, 600, 639, 1129
BlsI	GCNGC	5 cut(s)	412, 457, 601, 640, 1130
Bme1390I	CCNGG	2 cut(s)	774, 1141
Bme18I	GGWCC	3 cut(s)	30, 281, 1079
BmgT120I	GGNCC	5 cut(s)	30, 281, 508, 913, 1079
BmiI	GGNNCC	6 cut(s)	17, 31, 229, 613, 1062, 1080
BmrFI	CCNGG	2 cut(s)	774, 1141
BmsI	GCATC	3 cut(s)	360, 422, 657
BoxI	GACNNNNGTC	1 cut(s)	28
BpiI	GAAGAC	1 cut(s)	473
BpmI	CTGGAG	1 cut(s)	816
Bpu10I	CCTNAGC	1 cut(s)	1083
BpuEI	CTTGAG	1 cut(s)	457
BpuMI	CCSGG	1 cut(s)	1141
BsaJI	CCNNGG	6 cut(s)	19, 603, 772, 985, 1095, 1140
Bsc4I	CCNNNNNNNGG	3 cut(s)	192, 290, 595
Bse118I	RCCGGY	1 cut(s)	641
Bse1I	ACTGG	2 cut(s)	388, 799
Bse3DI	GCAATG	3 cut(s)	309, 846, 1108
BseBI	CCWGG	1 cut(s)	774
BseDI	CCNNGG	6 cut(s)	19, 603, 772, 985, 1095, 1140
BseGI	GGATG	5 cut(s)	97, 256, 384, 648, 999
BseLI	CCNNNNNNNGG	3 cut(s)	192, 290, 595
BseMI	GCAATG	3 cut(s)	309, 846, 1108
BseMII	CTCAG	2 cut(s)	369, 1074
BseNI	ACTGG	2 cut(s)	388, 799
BseRI	GAGGAG	2 cut(s)	8, 285
BseSI	GKGCMC	1 cut(s)	815
BseXI	GCAGC	4 cut(s)	397, 442, 611, 625
BshFI	GGCC	2 cut(s)	509, 915
BshNI	GGYRCC	2 cut(s)	227, 1060
BsiHKAI	GWGCWC	1 cut(s)	424
BsiSI	CCGG	2 cut(s)	642, 1140
BslFI	GGGAC	1 cut(s)	1092
BslI	CCNNNNNNNGG	3 cut(s)	192, 290, 595
BsmAI	GTCTC	1 cut(s)	1052
BsmFI	GGGAC	1 cut(s)	1092
BsmI	GAATGC	1 cut(s)	1096
BsnI	GGCC	2 cut(s)	509, 915
Bsp1286I	GDGCHC	2 cut(s)	424, 815
Bsp1407I	TGTACA	1 cut(s)	843
Bsp143I	GATC	4 cut(s)	195, 631, 834, 996
BspACI	CCGC	3 cut(s)	589, 969, 1128
BspANI	GGCC	2 cut(s)	509, 915
BspCNI	CTCAG	2 cut(s)	370, 1075
BspHI	TCATGA	2 cut(s)	472, 1050
BspLI	GGNNCC	6 cut(s)	17, 31, 229, 613, 1062, 1080
BspPI	GGATC	2 cut(s)	203, 991
BspT107I	GGYRCC	2 cut(s)	227, 1060
BsrBI	CCGCTC	1 cut(s)	591
BsrDI	GCAATG	3 cut(s)	309, 846, 1108
BsrFI	RCCGGY	1 cut(s)	641
BsrGI	TGTACA	1 cut(s)	843
BsrI	ACTGG	2 cut(s)	388, 799
BssAI	RCCGGY	1 cut(s)	641
BssECI	CCNNGG	6 cut(s)	19, 603, 772, 985, 1095, 1140
BssMI	GATC	4 cut(s)	195, 631, 834, 996
BssT1I	CCWWGG	2 cut(s)	985, 1095
Bst2UI	CCWGG	1 cut(s)	774
Bst4CI	ACNGT	5 cut(s)	50, 178, 622, 1042, 1057
Bst6I	CTCTTC	2 cut(s)	221, 950
BstAPI	GCANNNNNTGC	1 cut(s)	419
BstAUI	TGTACA	1 cut(s)	843
BstDEI	CTNAG	5 cut(s)	34, 378, 564, 696, 1083
BstF5I	GGATG	5 cut(s)	97, 256, 384, 648, 999
BstHHI	GCGC	1 cut(s)	375
BstKTI	GATC	4 cut(s)	198, 634, 837, 999
BstMAI	GTCTC	1 cut(s)	1052
BstMBI	GATC	4 cut(s)	195, 631, 834, 996
BstMWI	GCNNNNNNNGC	4 cut(s)	419, 635, 977, 1125
BstNI	CCWGG	1 cut(s)	774
BstPAI	GACNNNNGTC	1 cut(s)	28
BstSCI	CCNGG	2 cut(s)	772, 1139
BstSFI	CTRYAG	2 cut(s)	60, 573
BstSLI	GKGCMC	1 cut(s)	815
BstV1I	GCAGC	4 cut(s)	397, 442, 611, 625
BstV2I	GAAGAC	1 cut(s)	473
BstX2I	RGATCY	1 cut(s)	195
BstYI	RGATCY	1 cut(s)	195
BsuI	GTATCC	2 cut(s)	200, 831
BsuRI	GGCC	2 cut(s)	509, 915
BtsCI	GGATG	5 cut(s)	97, 256, 384, 648, 999
BtsIMutI	CAGTG	3 cut(s)	55, 792, 1062
CciI	TCATGA	2 cut(s)	472, 1050
CfoI	GCGC	1 cut(s)	375
Cfr10I	RCCGGY	1 cut(s)	641
Cfr13I	GGNCC	5 cut(s)	30, 281, 508, 913, 1079
Csp6I	GTAC	2 cut(s)	228, 844
CspCI	CAANNNNNGTGG	2 cut(s)	669, 704
CviAII	CATG	7 cut(s)	42, 335, 473, 816, 888, 919, 1051
CviQI	GTAC	2 cut(s)	228, 844
DdeI	CTNAG	5 cut(s)	34, 378, 564, 696, 1083
DpnI	GATC	4 cut(s)	197, 633, 836, 998
DpnII	GATC	4 cut(s)	195, 631, 834, 996
Eam1104I	CTCTTC	2 cut(s)	221, 950
EarI	CTCTTC	2 cut(s)	221, 950
Eco130I	CCWWGG	2 cut(s)	985, 1095
Eco47I	GGWCC	3 cut(s)	30, 281, 1079
EcoO109I	RGGNCCY	3 cut(s)	30, 913, 1079
EcoRII	CCWGG	1 cut(s)	772
EcoT14I	CCWWGG	2 cut(s)	985, 1095
EcoT22I	ATGCAT	1 cut(s)	754
ErhI	CCWWGG	2 cut(s)	985, 1095
FaeI	CATG	7 cut(s)	45, 338, 476, 819, 891, 922, 1054
FalI	AAGNNNNNCTT	2 cut(s)	182, 214
FaqI	GGGAC	1 cut(s)	1092
FatI	CATG	7 cut(s)	41, 334, 472, 815, 887, 918, 1050
FblI	GTMKAC	1 cut(s)	663
Fnu4HI	GCNGC	5 cut(s)	411, 456, 600, 639, 1129
FokI	GGATG	5 cut(s)	84, 263, 371, 635, 1006
Fsp4HI	GCNGC	5 cut(s)	411, 456, 600, 639, 1129
FspBI	CTAG	2 cut(s)	26, 158
GlaI	GCGC	1 cut(s)	374
GluI	GCNGC	5 cut(s)	411, 456, 600, 639, 1129
GsuI	CTGGAG	1 cut(s)	816
HaeIII	GGCC	2 cut(s)	509, 915
HapII	CCGG	2 cut(s)	642, 1140
HhaI	GCGC	1 cut(s)	375
Hin1II	CATG	7 cut(s)	45, 338, 476, 819, 891, 922, 1054
Hin6I	GCGC	1 cut(s)	373
HinP1I	GCGC	1 cut(s)	373
HinfI	GANTC	1 cut(s)	348
HpaII	CCGG	2 cut(s)	642, 1140
HphI	GGTGA	4 cut(s)	77, 368, 958, 997
Hpy166II	GTNNAC	1 cut(s)	664
Hpy188I	TCNGA	7 cut(s)	23, 57, 90, 114, 607, 714, 744
Hpy188III	TCNNGA	4 cut(s)	473, 867, 1051, 1171
Hpy8I	GTNNAC	1 cut(s)	664
HpyAV	CCTTC	3 cut(s)	111, 403, 602
HpyCH4III	ACNGT	5 cut(s)	50, 178, 622, 1042, 1057
HpyCH4IV	ACGT	2 cut(s)	666, 849
HpyCH4V	TGCA	8 cut(s)	137, 302, 326, 413, 551, 728, 752, 926
HpyF10VI	GCNNNNNNNGC	4 cut(s)	419, 635, 977, 1125
HpyF3I	CTNAG	5 cut(s)	34, 378, 564, 696, 1083
HpySE526I	ACGT	2 cut(s)	666, 849
Hsp92II	CATG	7 cut(s)	45, 338, 476, 819, 891, 922, 1054
HspAI	GCGC	1 cut(s)	373
KpnI	GGTACC	1 cut(s)	231
Kzo9I	GATC	4 cut(s)	195, 631, 834, 996
LmnI	GCTCC	2 cut(s)	21, 617
Lsp1109I	GCAGC	4 cut(s)	397, 442, 611, 625
LweI	GCATC	3 cut(s)	360, 422, 657
MaeI	CTAG	2 cut(s)	26, 158
MaeII	ACGT	2 cut(s)	666, 849
MaeIII	GTNAC	2 cut(s)	567, 1070
MalI	GATC	4 cut(s)	197, 633, 836, 998
MbiI	CCGCTC	1 cut(s)	591
MboI	GATC	4 cut(s)	195, 631, 834, 996
MboII	GAAGA	7 cut(s)	208, 473, 760, 907, 937, 952, 955
MfeI	CAATTG	2 cut(s)	806, 927
MflI	RGATCY	1 cut(s)	195
MhlI	GDGCHC	2 cut(s)	424, 815
MlyI	GAGTC	1 cut(s)	357
MmeI	TCCRAC	2 cut(s)	834, 971
Mph1103I	ATGCAT	1 cut(s)	754
MroXI	GAANNNNTTC	1 cut(s)	675
MseI	TTAA	3 cut(s)	180, 200, 1186
MslI	CAYNNNNRTG	1 cut(s)	1055
MspI	CCGG	2 cut(s)	642, 1140
MspR9I	CCNGG	2 cut(s)	774, 1141
MunI	CAATTG	2 cut(s)	806, 927
Mva1269I	GAATGC	1 cut(s)	1096
MvaI	CCWGG	1 cut(s)	774
MwoI	GCNNNNNNNGC	4 cut(s)	419, 635, 977, 1125
NciI	CCSGG	1 cut(s)	1141
NdeII	GATC	4 cut(s)	195, 631, 834, 996
NlaIII	CATG	7 cut(s)	45, 338, 476, 819, 891, 922, 1054
NlaIV	GGNNCC	6 cut(s)	17, 31, 229, 613, 1062, 1080
NsiI	ATGCAT	1 cut(s)	754
PagI	TCATGA	2 cut(s)	472, 1050
PctI	GAATGC	1 cut(s)	1096
PdmI	GAANNNNTTC	1 cut(s)	675
PkrI	GCNGC	5 cut(s)	412, 457, 601, 640, 1130
PleI	GAGTC	1 cut(s)	356
PpsI	GAGTC	1 cut(s)	356
PpuMI	RGGWCCY	2 cut(s)	30, 1079
PshAI	GACNNNNGTC	1 cut(s)	28
Psp5II	RGGWCCY	2 cut(s)	30, 1079
Psp6I	CCWGG	1 cut(s)	772
PspGI	CCWGG	1 cut(s)	772
PspN4I	GGNNCC	6 cut(s)	17, 31, 229, 613, 1062, 1080
PspPI	GGNCC	5 cut(s)	30, 281, 508, 913, 1079
PspPPI	RGGWCCY	2 cut(s)	30, 1079
PsuI	RGATCY	1 cut(s)	195
RsaI	GTAC	2 cut(s)	229, 845
RsaNI	GTAC	2 cut(s)	228, 844
RseI	CAYNNNNRTG	1 cut(s)	1055
SaqAI	TTAA	3 cut(s)	180, 200, 1186
SatI	GCNGC	5 cut(s)	411, 456, 600, 639, 1129
Sau3AI	GATC	4 cut(s)	195, 631, 834, 996
Sau96I	GGNCC	5 cut(s)	30, 281, 508, 913, 1079
SchI	GAGTC	1 cut(s)	357
ScrFI	CCNGG	2 cut(s)	774, 1141
SduI	GDGCHC	2 cut(s)	424, 815
SfaNI	GCATC	3 cut(s)	360, 422, 657
SfcI	CTRYAG	2 cut(s)	60, 573
SinI	GGWCC	3 cut(s)	30, 281, 1079
SmiMI	CAYNNNNRTG	1 cut(s)	1055
SmlI	CTYRAG	1 cut(s)	436
SmoI	CTYRAG	1 cut(s)	436
SsiI	CCGC	3 cut(s)	589, 969, 1128
SspMI	CTAG	2 cut(s)	26, 158
StyD4I	CCNGG	2 cut(s)	772, 1139
StyI	CCWWGG	2 cut(s)	985, 1095
TaaI	ACNGT	5 cut(s)	50, 178, 622, 1042, 1057
TaiI	ACGT	2 cut(s)	669, 852
TaqI	TCGA	4 cut(s)	104, 525, 866, 1152
TatI	WGTACW	1 cut(s)	843
TauI	GCSGC	1 cut(s)	1131
Tru1I	TTAA	3 cut(s)	180, 200, 1186
Tru9I	TTAA	3 cut(s)	180, 200, 1186
TscAI	CASTG	3 cut(s)	55, 799, 1062
TseI	GCWGC	4 cut(s)	410, 455, 599, 638
TspDTI	ATGAA	4 cut(s)	373, 511, 697, 769
TspRI	CASTG	3 cut(s)	55, 799, 1062
VpaK11BI	GGWCC	3 cut(s)	30, 281, 1079
XapI	RAATTY	2 cut(s)	78, 1181
XcmI	CCANNNNNNNNNTGG	2 cut(s)	395, 622
XmiI	GTMKAC	1 cut(s)	663
XmnI	GAANNNNTTC	1 cut(s)	675
XspI	CTAG	2 cut(s)	26, 158
Zsp2I	ATGCAT	1 cut(s)	754

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.