Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0001163

Physical Location & Seq

Genomic Coordinates Forward (+)

1613152 .. 1615613

Gene Structure 2462 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G034600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1254 bp

ATGACAGAGGACAATGAAAGCAGGGCTTCAATTAAGCATGAGGGACATTATAAAGCTATGGCGGTTTGTTGGTTTCTGGGGCTGGGCTCCCTTGTCGCTTGGAACAGTCTGCTGACTATAGGAGATTACTATTATAACTTGTTTCCAGCGAGTTACCACCCGTCGCGGGTTCTTACCCTTGTTTATCAACCATTTGCACTTATTACTATGGTAACACTAGCATACCATGAAGCAAAGTTGAACACCAGGAAGAGGAACTTAATTGGATATGCTCTCTTCTTCCTTGGGACCTTGATGCTAATAGTGGTGGATTTAGCTACGTCTGGGAGTGGAGCAATTGGACCCTATATTGGTATATGTGCATGTGTTGGTGCATTTGGGGTTGCAGATGCCCATGTTCAAGGTGGAATGGTCGGAGACCTGTCTTTTATGCATCCTGAATTCATCCAGTCCTTCTTTGCTGGCTTGGCTGCATCAGGTGCTCTAACCTCTGGCATGAGGCTGATGACAAAAGCTGCCTTCGAGAAGTATCACAATGGTCTTCTGATGTTCCTTGCAATTTCCACACTCATCGAGTTTCTGTGTATTCTTCTATATGCAATTTACTTCCCTAGATTGCCTATAGTAAAGTACTACCGCTCAAAGGCAGCCTCAGAAGGCTCTAAAACTGTATCCGCTGATCTTGCTGCTGCTGGCATCCAAACACAAGCAGACATAGAAGTCTCAAATGATACTAAAATACTTCCAACTCGACTGAGCACTAAGCAATTGTTCATGCAGAATATAGATTATGCACTTGACTTGTTTCTGATATATGTGCTGACATTATCAATCTTCCCCGGCTTCATATTTGAAAATACCGGAAAACACCAGTTGGGCACATGGTATCCACTTGTTCTGGTGGCAATGTACAATGTGTTGGATTTGATATCAAGATACATACCCCTTGTGAAATGCCTGAAGATCGAATCCAGAAAGGGCCTCATGATTACAATTCTATCGCGTTTCCTGTTCGTTCCAGCATACTACTTCACCGGAAAATACGGCGACCAGGGATGGATGATCTTGCTCACATCAGTCTTAGGATTAACAAATGGTTATCTCACTGTATGTGTCATGACAGTGGCACCCAAGGGTTACAAGGGACCTGAGCAAAATGCCTTGGGAAATATACTTGTGTTGTGTCTTTTGTGCGGCATATTTGCAGGAGTTTCCCTTGACTGGTTATGGCTCATTGGCAAGAGCAAATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005337 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0015858 GO:0015931 GO:0015932 GO:0016020 GO:0022857 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:1901264 GO:1901505 GO:1901642

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nucleoside_tran

Protein Analysis

418

Amino Acids

46.07

Weight (kDa)

8.73

Isoelectric Point (pI)

33.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001163)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61630 AT4G05110 AT4G05110 AT4G05110 AT4G05120 AT4G05120 AT4G05130 AT4G05140
fragaria_vesca	FvH4_3g03740 FvH4_3g03740 FvH4_3g03740 FvH4_3g03740 FvH4_3g03750 FvH4_5g10501
malus_domestica	MD05G1326900.v1.1 MD10G1305000.v1.1
prunus_persica	Prupe.4G034600_v2.0.a1
pyrus_communis	pycom05g30120 pycom10g25750
rosa_chinensis	RchiOBHm_Chr5g0005801 RchiOBHm_Chr5g0005811 RchiOBHm_Chr5g0005821 RchiOBHm_Chr7g0187631
rosa_laevigata	RLG00000004764 RLG00000031327 RLG00000031328 RLG00000031329
rosa_multiflora	Rmu_sc0002694.1_g000001
rosa_roxburghii	Rroxscaffold_1G00070040 Rroxscaffold_1G00070050 Rroxscaffold_1G00070060 Rroxscaffold_3G00267210
rosa_rugosa	Rorug04G0418200 Rorug04G0418300 Rorug04G0418400 Rorug04G0418500 Rorug04G0418500 Rorug04G0418600 Rorug04G0418700 Rorug06G0483300
rosa_samantha	Rh5AG045700 Rh5AG045800 Rh5AG045900 Rh5BG044400 Rh5BG044600 Rh5CG053200 Rh5CG053400 Rh5CG053500 Rh5DG044300 Rh7AG088200 Rh7BG089500 Rh7CG088800 Rh7DG090500
rosa_wichuraiana	Rw0G002660 Rw5G004600 Rw5G004610 Rw5G004620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	51, 135
AasI	GACNNNNNNGTC	1 cut(s)	719
AccB1I	GGYRCC	1 cut(s)	1126
AccBSI	CCGCTC	1 cut(s)	639
AccII	CGCG	2 cut(s)	166, 1003
AciI	CCGC	5 cut(s)	62, 166, 637, 675, 1194
AcsI	RAATTY	2 cut(s)	440, 1247
AcuI	CTGAAG	1 cut(s)	980
AfaI	GTAC	2 cut(s)	632, 911
AfiI	CCNNNNNNNGG	5 cut(s)	166, 252, 350, 643, 1221
AgsI	TTSAA	4 cut(s)	30, 241, 401, 854
AjnI	CCWGG	2 cut(s)	245, 1050
AluBI	AGCT	3 cut(s)	56, 317, 515
AluI	AGCT	3 cut(s)	56, 317, 515
Alw21I	GWGCWC	2 cut(s)	484, 761
Alw26I	GTCTC	2 cut(s)	411, 727
AoxI	GGCC	1 cut(s)	979
ApeKI	GCWGC	5 cut(s)	470, 515, 647, 686, 689
ApoI	RAATTY	2 cut(s)	440, 1247
AspS9I	GGNCC	4 cut(s)	288, 341, 979, 1145
AsuC2I	CCSGG	1 cut(s)	840
AsuHPI	GGTGA	1 cut(s)	1024
AvaII	GGWCC	3 cut(s)	288, 341, 1145
BaeGI	GKGCMC	1 cut(s)	881
BanI	GGYRCC	1 cut(s)	1126
BanII	GRGCYC	1 cut(s)	89
BbsI	GAAGAC	1 cut(s)	533
Bbv12I	GWGCWC	2 cut(s)	484, 761
BbvI	GCAGC	5 cut(s)	457, 502, 659, 673, 676
BccI	CCATC	1 cut(s)	1050
BceAI	ACGGC	1 cut(s)	1060
BciT130I	CCWGG	2 cut(s)	247, 1052
BciVI	GTATCC	2 cut(s)	682, 897
BcnI	CCSGG	1 cut(s)	840
BcoDI	GTCTC	2 cut(s)	411, 727
BfaI	CTAG	2 cut(s)	218, 612
BfmI	CTRYAG	2 cut(s)	117, 621
BfuI	GTATCC	2 cut(s)	682, 897
BisI	GCNGC	6 cut(s)	471, 516, 648, 687, 690, 1195
BlsI	GCNGC	6 cut(s)	472, 517, 649, 688, 691, 1196
BmcAI	AGTACT	1 cut(s)	632
Bme1390I	CCNGG	3 cut(s)	247, 840, 1052
Bme18I	GGWCC	3 cut(s)	288, 341, 1145
BmgT120I	GGNCC	4 cut(s)	288, 341, 979, 1145
BmiI	GGNNCC	5 cut(s)	88, 289, 343, 1128, 1146
BmrFI	CCNGG	3 cut(s)	247, 840, 1052
BmsI	GCATC	5 cut(s)	285, 379, 442, 482, 705
BpiI	GAAGAC	1 cut(s)	533
Bpu10I	CCTNAGC	1 cut(s)	1149
BpuMI	CCSGG	1 cut(s)	840
BsaI	GGTCTC	1 cut(s)	411
BsaJI	CCNNGG	5 cut(s)	283, 838, 1051, 1131, 1161
BsaWI	WCCGGW	2 cut(s)	860, 1034
Bsc4I	CCNNNNNNNGG	5 cut(s)	166, 252, 350, 643, 1221
Bse1I	ACTGG	3 cut(s)	448, 871, 1226
Bse3DI	GCAATG	1 cut(s)	912
BseBI	CCWGG	2 cut(s)	247, 1052
BseDI	CCNNGG	5 cut(s)	283, 838, 1051, 1131, 1161
BseGI	GGATG	5 cut(s)	433, 444, 696, 1061, 1065
BseLI	CCNNNNNNNGG	5 cut(s)	166, 252, 350, 643, 1221
BseMI	GCAATG	1 cut(s)	912
BseMII	CTCAG	3 cut(s)	666, 746, 1140
BseNI	ACTGG	3 cut(s)	448, 871, 1226
BseSI	GKGCMC	1 cut(s)	881
BseXI	GCAGC	5 cut(s)	457, 502, 659, 673, 676
BseYI	CCCAGC	1 cut(s)	82
Bsh1236I	CGCG	2 cut(s)	166, 1003
BshFI	GGCC	1 cut(s)	981
BshNI	GGYRCC	1 cut(s)	1126
BsiHKAI	GWGCWC	2 cut(s)	484, 761
BsiSI	CCGG	3 cut(s)	840, 861, 1035
BslFI	GGGAC	3 cut(s)	57, 301, 1158
BslI	CCNNNNNNNGG	5 cut(s)	166, 252, 350, 643, 1221
BsmAI	GTCTC	2 cut(s)	411, 727
BsmFI	GGGAC	3 cut(s)	57, 301, 1158
BsnI	GGCC	1 cut(s)	981
Bso31I	GGTCTC	1 cut(s)	411
Bsp1286I	GDGCHC	4 cut(s)	89, 484, 761, 881
Bsp1407I	TGTACA	1 cut(s)	909
Bsp143I	GATC	3 cut(s)	679, 963, 1062
BspACI	CCGC	5 cut(s)	62, 166, 637, 675, 1194
BspANI	GGCC	1 cut(s)	981
BspCNI	CTCAG	3 cut(s)	665, 747, 1141
BspFNI	CGCG	2 cut(s)	166, 1003
BspHI	TCATGA	2 cut(s)	984, 1116
BspLI	GGNNCC	5 cut(s)	88, 289, 343, 1128, 1146
BspT107I	GGYRCC	1 cut(s)	1126
BspTNI	GGTCTC	1 cut(s)	411
BsrBI	CCGCTC	1 cut(s)	639
BsrDI	GCAATG	1 cut(s)	912
BsrGI	TGTACA	1 cut(s)	909
BsrI	ACTGG	3 cut(s)	448, 871, 1226
BssECI	CCNNGG	5 cut(s)	283, 838, 1051, 1131, 1161
BssMI	GATC	3 cut(s)	679, 963, 1062
BssT1I	CCWWGG	3 cut(s)	283, 1131, 1161
Bst2UI	CCWGG	2 cut(s)	247, 1052
Bst4CI	ACNGT	4 cut(s)	107, 670, 1108, 1123
Bst6I	CTCTTC	2 cut(s)	245, 281
BstAPI	GCANNNNNTGC	1 cut(s)	479
BstAUI	TGTACA	1 cut(s)	909
BstC8I	GCNNGC	2 cut(s)	463, 694
BstDEI	CTNAG	5 cut(s)	652, 755, 762, 1081, 1149
BstF5I	GGATG	5 cut(s)	433, 444, 696, 1061, 1065
BstFNI	CGCG	2 cut(s)	166, 1003
BstKTI	GATC	3 cut(s)	682, 966, 1065
BstMAI	GTCTC	2 cut(s)	411, 727
BstMBI	GATC	3 cut(s)	679, 963, 1062
BstMWI	GCNNNNNNNGC	3 cut(s)	467, 479, 683
BstNI	CCWGG	2 cut(s)	247, 1052
BstNSI	RCATGY	1 cut(s)	366
BstSCI	CCNGG	3 cut(s)	245, 838, 1050
BstSFI	CTRYAG	2 cut(s)	117, 621
BstSLI	GKGCMC	1 cut(s)	881
BstUI	CGCG	2 cut(s)	166, 1003
BstV1I	GCAGC	5 cut(s)	457, 502, 659, 673, 676
BstV2I	GAAGAC	1 cut(s)	533
BsuI	GTATCC	2 cut(s)	682, 897
BsuRI	GGCC	1 cut(s)	981
BtsCI	GGATG	5 cut(s)	433, 444, 696, 1061, 1065
BtsIMutI	CAGTG	2 cut(s)	1104, 1128
Cac8I	GCNNGC	2 cut(s)	463, 694
CciI	TCATGA	2 cut(s)	984, 1116
Cfr13I	GGNCC	4 cut(s)	288, 341, 979, 1145
Csp6I	GTAC	2 cut(s)	631, 910
CviAII	CATG	9 cut(s)	38, 227, 363, 395, 496, 775, 882, 985, 1117
CviQI	GTAC	2 cut(s)	631, 910
DdeI	CTNAG	5 cut(s)	652, 755, 762, 1081, 1149
DpnI	GATC	3 cut(s)	681, 965, 1064
DpnII	GATC	3 cut(s)	679, 963, 1062
DrdI	GACNNNNNNGTC	1 cut(s)	719
DseDI	GACNNNNNNGTC	1 cut(s)	719
Eam1104I	CTCTTC	2 cut(s)	245, 281
EarI	CTCTTC	2 cut(s)	245, 281
Eco130I	CCWWGG	3 cut(s)	283, 1131, 1161
Eco24I	GRGCYC	1 cut(s)	89
Eco31I	GGTCTC	1 cut(s)	411
Eco32I	GATATC	1 cut(s)	930
Eco47I	GGWCC	3 cut(s)	288, 341, 1145
Eco57I	CTGAAG	1 cut(s)	980
EcoO109I	RGGNCCY	3 cut(s)	288, 979, 1145
EcoRI	GAATTC	1 cut(s)	440
EcoRII	CCWGG	2 cut(s)	245, 1050
EcoRV	GATATC	1 cut(s)	930
EcoT14I	CCWWGG	3 cut(s)	283, 1131, 1161
EcoT22I	ATGCAT	1 cut(s)	435
EcoT38I	GRGCYC	1 cut(s)	89
ErhI	CCWWGG	3 cut(s)	283, 1131, 1161
FaeI	CATG	9 cut(s)	41, 230, 366, 398, 499, 778, 885, 988, 1120
FalI	AAGNNNNNCTT	4 cut(s)	10, 42, 242, 274
FaqI	GGGAC	3 cut(s)	57, 301, 1158
FatI	CATG	9 cut(s)	37, 226, 362, 394, 495, 774, 881, 984, 1116
FauI	CCCGC	1 cut(s)	159
Fnu4HI	GCNGC	6 cut(s)	471, 516, 648, 687, 690, 1195
FokI	GGATG	5 cut(s)	420, 431, 683, 1068, 1072
FriOI	GRGCYC	1 cut(s)	89
Fsp4HI	GCNGC	6 cut(s)	471, 516, 648, 687, 690, 1195
FspBI	CTAG	2 cut(s)	218, 612
GluI	GCNGC	6 cut(s)	471, 516, 648, 687, 690, 1195
GsaI	CCCAGC	1 cut(s)	86
HaeIII	GGCC	1 cut(s)	981
HapII	CCGG	3 cut(s)	840, 861, 1035
Hin1II	CATG	9 cut(s)	41, 230, 366, 398, 499, 778, 885, 988, 1120
HinfI	GANTC	1 cut(s)	968
HpaII	CCGG	3 cut(s)	840, 861, 1035
HphI	GGTGA	1 cut(s)	1024
Hpy188I	TCNGA	4 cut(s)	416, 546, 655, 810
Hpy188III	TCNNGA	6 cut(s)	437, 523, 933, 972, 985, 1117
Hpy99I	CGWCG	1 cut(s)	166
HpyAV	CCTTC	3 cut(s)	463, 529, 650
HpyCH4III	ACNGT	4 cut(s)	107, 670, 1108, 1123
HpyCH4IV	ACGT	1 cut(s)	320
HpyF10VI	GCNNNNNNNGC	3 cut(s)	467, 479, 683
HpyF3I	CTNAG	5 cut(s)	652, 755, 762, 1081, 1149
HpySE526I	ACGT	1 cut(s)	320
Hsp92II	CATG	9 cut(s)	41, 230, 366, 398, 499, 778, 885, 988, 1120
Kzo9I	GATC	3 cut(s)	679, 963, 1062
LmnI	GCTCC	2 cut(s)	92, 332
Lsp1109I	GCAGC	5 cut(s)	457, 502, 659, 673, 676
LweI	GCATC	5 cut(s)	285, 379, 442, 482, 705
MaeI	CTAG	2 cut(s)	218, 612
MaeII	ACGT	1 cut(s)	320
MaeIII	GTNAC	3 cut(s)	152, 211, 1136
MalI	GATC	3 cut(s)	681, 965, 1064
MbiI	CCGCTC	1 cut(s)	639
MboI	GATC	3 cut(s)	679, 963, 1062
MboII	GAAGA	7 cut(s)	262, 268, 271, 533, 581, 826, 973
MfeI	CAATTG	2 cut(s)	336, 767
MhlI	GDGCHC	4 cut(s)	89, 484, 761, 881
MluCI	AATT	9 cut(s)	30, 261, 336, 440, 558, 600, 767, 993, 1247
MmeI	TCCRAC	3 cut(s)	394, 770, 900
MnlI	CCTC	6 cut(s)	34, 246, 492, 499, 661, 992
Mph1103I	ATGCAT	1 cut(s)	435
MseI	TTAA	4 cut(s)	33, 260, 1088, 1252
MslI	CAYNNNNRTG	1 cut(s)	1121
MspA1I	CMGCKG	1 cut(s)	677
MspI	CCGG	3 cut(s)	840, 861, 1035
MspR9I	CCNGG	3 cut(s)	247, 840, 1052
MunI	CAATTG	2 cut(s)	336, 767
MvaI	CCWGG	2 cut(s)	247, 1052
MvnI	CGCG	2 cut(s)	166, 1003
MwoI	GCNNNNNNNGC	3 cut(s)	467, 479, 683
NciI	CCSGG	1 cut(s)	840
NdeII	GATC	3 cut(s)	679, 963, 1062
NlaIII	CATG	9 cut(s)	41, 230, 366, 398, 499, 778, 885, 988, 1120
NlaIV	GGNNCC	5 cut(s)	88, 289, 343, 1128, 1146
NsiI	ATGCAT	1 cut(s)	435
NspI	RCATGY	1 cut(s)	366
PagI	TCATGA	2 cut(s)	984, 1116
PfeI	GAWTC	1 cut(s)	968
PkrI	GCNGC	6 cut(s)	472, 517, 649, 688, 691, 1196
PpuMI	RGGWCCY	2 cut(s)	288, 1145
PsiI	TTATAA	2 cut(s)	51, 135
Psp5II	RGGWCCY	2 cut(s)	288, 1145
Psp6I	CCWGG	2 cut(s)	245, 1050
PspFI	CCCAGC	1 cut(s)	82
PspGI	CCWGG	2 cut(s)	245, 1050
PspN4I	GGNNCC	5 cut(s)	88, 289, 343, 1128, 1146
PspPI	GGNCC	4 cut(s)	288, 341, 979, 1145
PspPPI	RGGWCCY	2 cut(s)	288, 1145
RsaI	GTAC	2 cut(s)	632, 911
RsaNI	GTAC	2 cut(s)	631, 910
RseI	CAYNNNNRTG	1 cut(s)	1121
SaqAI	TTAA	4 cut(s)	33, 260, 1088, 1252
SatI	GCNGC	6 cut(s)	471, 516, 648, 687, 690, 1195
Sau3AI	GATC	3 cut(s)	679, 963, 1062
Sau96I	GGNCC	4 cut(s)	288, 341, 979, 1145
ScaI	AGTACT	1 cut(s)	632
ScrFI	CCNGG	3 cut(s)	247, 840, 1052
SduI	GDGCHC	4 cut(s)	89, 484, 761, 881
SfaNI	GCATC	5 cut(s)	285, 379, 442, 482, 705
SfcI	CTRYAG	2 cut(s)	117, 621
SinI	GGWCC	3 cut(s)	288, 341, 1145
SmiMI	CAYNNNNRTG	1 cut(s)	1121
Sse9I	AATT	9 cut(s)	30, 261, 336, 440, 558, 600, 767, 993, 1247
SsiI	CCGC	5 cut(s)	62, 166, 637, 675, 1194
SspMI	CTAG	2 cut(s)	218, 612
StyD4I	CCNGG	3 cut(s)	245, 838, 1050
StyI	CCWWGG	3 cut(s)	283, 1131, 1161
TaaI	ACNGT	4 cut(s)	107, 670, 1108, 1123
TaiI	ACGT	1 cut(s)	323
TaqI	TCGA	4 cut(s)	522, 573, 751, 966
TasI	AATT	9 cut(s)	30, 261, 336, 440, 558, 600, 767, 993, 1247
TatI	WGTACW	2 cut(s)	630, 909
TauI	GCSGC	1 cut(s)	1197
TfiI	GAWTC	1 cut(s)	968
Tru1I	TTAA	4 cut(s)	33, 260, 1088, 1252
Tru9I	TTAA	4 cut(s)	33, 260, 1088, 1252
TscAI	CASTG	2 cut(s)	1111, 1128
TseI	GCWGC	5 cut(s)	470, 515, 647, 686, 689
TspDTI	ATGAA	5 cut(s)	30, 243, 433, 763, 835
TspRI	CASTG	2 cut(s)	1111, 1128
VpaK11BI	GGWCC	3 cut(s)	288, 341, 1145
XapI	RAATTY	2 cut(s)	440, 1247
XceI	RCATGY	1 cut(s)	366
XcmI	CCANNNNNNNNNTGG	1 cut(s)	401
XspI	CTAG	2 cut(s)	218, 612
ZrmI	AGTACT	1 cut(s)	632
Zsp2I	ATGCAT	1 cut(s)	435

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.