Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002694.1

Orthogroup ID

OG0001163

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 3500

Gene Structure 3500 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002694.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1292 bp

ttgcatatccaagtcagctccaagtatatagcccaggactagtagccatgactgaagttaatgggatcaaggctccagagaagcttgaggggcattttaaagctatggcaatttgttggctcctcggactagggtccttagtcgcatggaacagtgttctgactataggtgattactatggaatattgtttccgaaataccatccttcgagggttctgaccctcgtttatcaaccatttgcatttatatcaatgggaatactagcatacaaggaggcaaccgttaataccagaaagaggatcttaattggatacactctcttctttcttggtaccttgatgatgatagttgtggatgttgctacatctggcagaggaggaattggaccttatattggtatatgtgcaatggttggtgtatttggggttgcagatggtcatgttcaaggtggagtcattggtgatttatccttgatgcgccctgagttcatccagtccttctttggtggcttggctgcatcaggtgctctaacctctgctttgaggctgatgacaagggctgcctttgagaagtatcatgatggtcttcgcaagggaacaatgatgttcttggccctttccacattcatcgagttcctgtgtatatttctgtatgcaatttacttctctaagttacctatagtaaagtattaccgctcaaaggcagcctcggaaggctccaaaactgtaatggctgatcttgctgccggtggcatccaaacacaagtagacgtagaagcaattccacaacgattgaccactaagcaattattcattcagaattatgattatgcacttggcttgtttctgatatatgcattgacattatcaatcttccctggtttcatttttgaaaacactggagaacaccaattgggcacatggtatccccttgttttgatcgcaatgtacaacgtgttggattttatatcgagatacacacctcttataccatgcttgaagattgaaaacagaaagggcctcatggttgcaattggactgcgttttctcttcgttccagcgttctacttcaccgcaaaatacgctgaccaaggttggatgatcctgctcacctcaatcttgggttttacaaatggtcatcttactgtttgtctcatgacagtggcaccaaaaggttacacgggacctgagcagaatgccttgggcaatgtccttgctttctgccttatgtgcggcatatttgccggggttttactcgattggttatggctcatcgggaacggcaaattttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005337 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0015858 GO:0015931 GO:0015932 GO:0016020 GO:0022857 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:1901264 GO:1901505 GO:1901642

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nucleoside_tran

Protein Analysis

429

Amino Acids

47.24

Weight (kDa)

8.89

Isoelectric Point (pI)

29.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001163)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61630 AT4G05110 AT4G05110 AT4G05110 AT4G05120 AT4G05120 AT4G05130 AT4G05140
fragaria_vesca	FvH4_3g03740 FvH4_3g03740 FvH4_3g03740 FvH4_3g03740 FvH4_3g03750 FvH4_5g10501
malus_domestica	MD05G1326900.v1.1 MD10G1305000.v1.1
prunus_persica	Prupe.4G034600_v2.0.a1
pyrus_communis	pycom05g30120 pycom10g25750
rosa_chinensis	RchiOBHm_Chr5g0005801 RchiOBHm_Chr5g0005811 RchiOBHm_Chr5g0005821 RchiOBHm_Chr7g0187631
rosa_laevigata	RLG00000004764 RLG00000031327 RLG00000031328 RLG00000031329
rosa_multiflora	Rmu_sc0002694.1_g000001
rosa_roxburghii	Rroxscaffold_1G00070040 Rroxscaffold_1G00070050 Rroxscaffold_1G00070060 Rroxscaffold_3G00267210
rosa_rugosa	Rorug04G0418200 Rorug04G0418300 Rorug04G0418400 Rorug04G0418500 Rorug04G0418500 Rorug04G0418600 Rorug04G0418700 Rorug06G0483300
rosa_samantha	Rh5AG045700 Rh5AG045800 Rh5AG045900 Rh5BG044400 Rh5BG044600 Rh5CG053200 Rh5CG053400 Rh5CG053500 Rh5DG044300 Rh7AG088200 Rh7BG089500 Rh7CG088800 Rh7DG090500
rosa_wichuraiana	Rw0G002660 Rw5G004600 Rw5G004610 Rw5G004620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	331
AccB1I	GGYRCC	2 cut(s)	331, 1164
AccBSI	CCGCTC	1 cut(s)	695
AccI	GTMKAC	1 cut(s)	767
AciI	CCGC	3 cut(s)	693, 1073, 1232
AclWI	GGATC	3 cut(s)	73, 307, 1095
AcsI	RAATTY	1 cut(s)	1285
AcuI	CTGAAG	1 cut(s)	74
AfaI	GTAC	2 cut(s)	333, 949
AfiI	CCNNNNNNNGG	3 cut(s)	296, 394, 699
AflIII	ACRYGT	1 cut(s)	953
AgsI	TTSAA	4 cut(s)	445, 892, 999, 1006
AhlI	ACTAGT	1 cut(s)	39
AjnI	CCWGG	2 cut(s)	33, 876
AluBI	AGCT	3 cut(s)	18, 84, 103
AluI	AGCT	3 cut(s)	18, 84, 103
Alw21I	GWGCWC	1 cut(s)	528
Alw26I	GTCTC	1 cut(s)	1156
AlwI	GGATC	3 cut(s)	73, 307, 1095
AoxI	GGCC	2 cut(s)	611, 1017
ApeKI	GCWGC	4 cut(s)	514, 559, 703, 742
ApoI	RAATTY	1 cut(s)	1285
Asp700I	GAANNNNTTC	1 cut(s)	779
Asp718I	GGTACC	1 cut(s)	331
AspLEI	GCGC	1 cut(s)	479
AspS9I	GGNCC	5 cut(s)	134, 385, 612, 1017, 1183
AsuC2I	CCSGG	1 cut(s)	1245
AsuHPI	GGTGA	4 cut(s)	181, 472, 1062, 1101
AvaII	GGWCC	3 cut(s)	134, 385, 1183
BaeGI	GKGCMC	1 cut(s)	919
BanI	GGYRCC	2 cut(s)	331, 1164
BbsI	GAAGAC	1 cut(s)	577
Bbv12I	GWGCWC	1 cut(s)	528
BbvI	GCAGC	4 cut(s)	501, 546, 715, 729
BccI	CCATC	3 cut(s)	209, 427, 574
BciT130I	CCWGG	2 cut(s)	35, 878
BciVI	GTATCC	2 cut(s)	304, 935
BcnI	CCSGG	1 cut(s)	1245
BcoDI	GTCTC	1 cut(s)	1156
BcuI	ACTAGT	1 cut(s)	39
BfaI	CTAG	3 cut(s)	40, 130, 262
BfmI	CTRYAG	2 cut(s)	164, 677
BfuI	GTATCC	2 cut(s)	304, 935
BisI	GCNGC	5 cut(s)	515, 560, 704, 743, 1233
BlsI	GCNGC	5 cut(s)	516, 561, 705, 744, 1234
Bme1390I	CCNGG	3 cut(s)	35, 878, 1245
Bme18I	GGWCC	3 cut(s)	134, 385, 1183
BmgT120I	GGNCC	5 cut(s)	134, 385, 612, 1017, 1183
BmiI	GGNNCC	7 cut(s)	74, 121, 135, 333, 717, 1166, 1184
BmrFI	CCNGG	3 cut(s)	35, 878, 1245
BmsI	GCATC	3 cut(s)	464, 526, 761
BoxI	GACNNNNGTC	1 cut(s)	132
BpiI	GAAGAC	1 cut(s)	577
BpmI	CTGGAG	2 cut(s)	59, 920
Bpu10I	CCTNAGC	1 cut(s)	1187
BpuEI	CTTGAG	1 cut(s)	106
BpuMI	CCSGG	1 cut(s)	1245
BsaJI	CCNNGG	7 cut(s)	33, 123, 707, 876, 1089, 1199, 1244
Bsc4I	CCNNNNNNNGG	3 cut(s)	296, 394, 699
Bse118I	RCCGGY	1 cut(s)	745
Bse1I	ACTGG	2 cut(s)	492, 903
Bse3DI	GCAATG	3 cut(s)	413, 950, 1212
BseBI	CCWGG	2 cut(s)	35, 878
BseDI	CCNNGG	7 cut(s)	33, 123, 707, 876, 1089, 1199, 1244
BseGI	GGATG	5 cut(s)	201, 360, 488, 752, 1103
BseLI	CCNNNNNNNGG	3 cut(s)	296, 394, 699
BseMI	GCAATG	3 cut(s)	413, 950, 1212
BseMII	CTCAG	2 cut(s)	473, 1178
BseNI	ACTGG	2 cut(s)	492, 903
BseRI	GAGGAG	2 cut(s)	112, 389
BseSI	GKGCMC	1 cut(s)	919
BseXI	GCAGC	4 cut(s)	501, 546, 715, 729
BshFI	GGCC	2 cut(s)	613, 1019
BshNI	GGYRCC	2 cut(s)	331, 1164
BsiHKAI	GWGCWC	1 cut(s)	528
BsiSI	CCGG	2 cut(s)	746, 1244
BslFI	GGGAC	1 cut(s)	1196
BslI	CCNNNNNNNGG	3 cut(s)	296, 394, 699
BsmAI	GTCTC	1 cut(s)	1156
BsmFI	GGGAC	1 cut(s)	1196
BsmI	GAATGC	1 cut(s)	1200
BsnI	GGCC	2 cut(s)	613, 1019
Bsp1286I	GDGCHC	2 cut(s)	528, 919
Bsp1407I	TGTACA	1 cut(s)	947
Bsp143I	GATC	5 cut(s)	65, 299, 735, 938, 1100
BspACI	CCGC	3 cut(s)	693, 1073, 1232
BspANI	GGCC	2 cut(s)	613, 1019
BspCNI	CTCAG	2 cut(s)	474, 1179
BspHI	TCATGA	2 cut(s)	576, 1154
BspLI	GGNNCC	7 cut(s)	74, 121, 135, 333, 717, 1166, 1184
BspPI	GGATC	3 cut(s)	73, 307, 1095
BspT107I	GGYRCC	2 cut(s)	331, 1164
BsrBI	CCGCTC	1 cut(s)	695
BsrDI	GCAATG	3 cut(s)	413, 950, 1212
BsrFI	RCCGGY	1 cut(s)	745
BsrGI	TGTACA	1 cut(s)	947
BsrI	ACTGG	2 cut(s)	492, 903
BssAI	RCCGGY	1 cut(s)	745
BssECI	CCNNGG	7 cut(s)	33, 123, 707, 876, 1089, 1199, 1244
BssMI	GATC	5 cut(s)	65, 299, 735, 938, 1100
BssT1I	CCWWGG	2 cut(s)	1089, 1199
Bst2UI	CCWGG	2 cut(s)	35, 878
Bst4CI	ACNGT	5 cut(s)	154, 282, 726, 1146, 1161
Bst6I	CTCTTC	2 cut(s)	325, 1054
BstAPI	GCANNNNNTGC	1 cut(s)	523
BstAUI	TGTACA	1 cut(s)	947
BstDEI	CTNAG	5 cut(s)	138, 482, 668, 800, 1187
BstF5I	GGATG	5 cut(s)	201, 360, 488, 752, 1103
BstHHI	GCGC	1 cut(s)	479
BstKTI	GATC	5 cut(s)	68, 302, 738, 941, 1103
BstMAI	GTCTC	1 cut(s)	1156
BstMBI	GATC	5 cut(s)	65, 299, 735, 938, 1100
BstMWI	GCNNNNNNNGC	5 cut(s)	90, 523, 739, 1081, 1229
BstNI	CCWGG	2 cut(s)	35, 878
BstPAI	GACNNNNGTC	1 cut(s)	132
BstSCI	CCNGG	3 cut(s)	33, 876, 1243
BstSFI	CTRYAG	2 cut(s)	164, 677
BstSLI	GKGCMC	1 cut(s)	919
BstV1I	GCAGC	4 cut(s)	501, 546, 715, 729
BstV2I	GAAGAC	1 cut(s)	577
BstX2I	RGATCY	1 cut(s)	299
BstYI	RGATCY	1 cut(s)	299
BsuI	GTATCC	2 cut(s)	304, 935
BsuRI	GGCC	2 cut(s)	613, 1019
BtsCI	GGATG	5 cut(s)	201, 360, 488, 752, 1103
BtsIMutI	CAGTG	3 cut(s)	159, 896, 1166
CciI	TCATGA	2 cut(s)	576, 1154
CfoI	GCGC	1 cut(s)	479
Cfr10I	RCCGGY	1 cut(s)	745
Cfr13I	GGNCC	5 cut(s)	134, 385, 612, 1017, 1183
Csp6I	GTAC	2 cut(s)	332, 948
CspCI	CAANNNNNGTGG	2 cut(s)	773, 808
CviAII	CATG	8 cut(s)	48, 146, 439, 577, 920, 992, 1023, 1155
CviQI	GTAC	2 cut(s)	332, 948
DdeI	CTNAG	5 cut(s)	138, 482, 668, 800, 1187
DpnI	GATC	5 cut(s)	67, 301, 737, 940, 1102
DpnII	GATC	5 cut(s)	65, 299, 735, 938, 1100
DraI	TTTAAA	1 cut(s)	99
Eam1104I	CTCTTC	2 cut(s)	325, 1054
EarI	CTCTTC	2 cut(s)	325, 1054
Eco130I	CCWWGG	2 cut(s)	1089, 1199
Eco47I	GGWCC	3 cut(s)	134, 385, 1183
Eco57I	CTGAAG	1 cut(s)	74
EcoO109I	RGGNCCY	3 cut(s)	134, 1017, 1183
EcoRII	CCWGG	2 cut(s)	33, 876
EcoT14I	CCWWGG	2 cut(s)	1089, 1199
EcoT22I	ATGCAT	1 cut(s)	858
ErhI	CCWWGG	2 cut(s)	1089, 1199
FaeI	CATG	8 cut(s)	51, 149, 442, 580, 923, 995, 1026, 1158
FalI	AAGNNNNNCTT	2 cut(s)	286, 318
FaqI	GGGAC	1 cut(s)	1196
FatI	CATG	8 cut(s)	47, 145, 438, 576, 919, 991, 1022, 1154
FblI	GTMKAC	1 cut(s)	767
Fnu4HI	GCNGC	5 cut(s)	515, 560, 704, 743, 1233
FokI	GGATG	5 cut(s)	188, 367, 475, 739, 1110
Fsp4HI	GCNGC	5 cut(s)	515, 560, 704, 743, 1233
FspBI	CTAG	3 cut(s)	40, 130, 262
GlaI	GCGC	1 cut(s)	478
GluI	GCNGC	5 cut(s)	515, 560, 704, 743, 1233
GsuI	CTGGAG	2 cut(s)	59, 920
HaeIII	GGCC	2 cut(s)	613, 1019
HapII	CCGG	2 cut(s)	746, 1244
HhaI	GCGC	1 cut(s)	479
Hin1II	CATG	8 cut(s)	51, 149, 442, 580, 923, 995, 1026, 1158
Hin6I	GCGC	1 cut(s)	477
HinP1I	GCGC	1 cut(s)	477
HindIII	AAGCTT	1 cut(s)	82
HinfI	GANTC	1 cut(s)	452
HpaII	CCGG	2 cut(s)	746, 1244
HphI	GGTGA	4 cut(s)	181, 472, 1062, 1101
Hpy166II	GTNNAC	1 cut(s)	768
Hpy188I	TCNGA	7 cut(s)	127, 161, 194, 218, 711, 818, 848
Hpy188III	TCNNGA	5 cut(s)	76, 577, 971, 1155, 1275
Hpy8I	GTNNAC	1 cut(s)	768
HpyAV	CCTTC	3 cut(s)	215, 507, 706
HpyCH4III	ACNGT	5 cut(s)	154, 282, 726, 1146, 1161
HpyCH4IV	ACGT	2 cut(s)	770, 953
HpyCH4V	TGCA	9 cut(s)	4, 241, 406, 430, 517, 655, 832, 856, 1030
HpyF10VI	GCNNNNNNNGC	5 cut(s)	90, 523, 739, 1081, 1229
HpyF3I	CTNAG	5 cut(s)	138, 482, 668, 800, 1187
HpySE526I	ACGT	2 cut(s)	770, 953
Hsp92II	CATG	8 cut(s)	51, 149, 442, 580, 923, 995, 1026, 1158
HspAI	GCGC	1 cut(s)	477
KpnI	GGTACC	1 cut(s)	335
Kzo9I	GATC	5 cut(s)	65, 299, 735, 938, 1100
LmnI	GCTCC	4 cut(s)	23, 78, 125, 721
Lsp1109I	GCAGC	4 cut(s)	501, 546, 715, 729
LweI	GCATC	3 cut(s)	464, 526, 761
MaeI	CTAG	3 cut(s)	40, 130, 262
MaeII	ACGT	2 cut(s)	770, 953
MaeIII	GTNAC	2 cut(s)	671, 1174
MalI	GATC	5 cut(s)	67, 301, 737, 940, 1102
MbiI	CCGCTC	1 cut(s)	695
MboI	GATC	5 cut(s)	65, 299, 735, 938, 1100
MboII	GAAGA	5 cut(s)	312, 577, 864, 1011, 1041
MfeI	CAATTG	2 cut(s)	910, 1031
MflI	RGATCY	1 cut(s)	299
MhlI	GDGCHC	2 cut(s)	528, 919
MlyI	GAGTC	1 cut(s)	461
MmeI	TCCRAC	2 cut(s)	938, 1075
Mph1103I	ATGCAT	1 cut(s)	858
MroXI	GAANNNNTTC	1 cut(s)	779
MseI	TTAA	5 cut(s)	59, 98, 284, 304, 1290
MslI	CAYNNNNRTG	1 cut(s)	1159
MspI	CCGG	2 cut(s)	746, 1244
MspR9I	CCNGG	3 cut(s)	35, 878, 1245
MunI	CAATTG	2 cut(s)	910, 1031
Mva1269I	GAATGC	1 cut(s)	1200
MvaI	CCWGG	2 cut(s)	35, 878
MwoI	GCNNNNNNNGC	5 cut(s)	90, 523, 739, 1081, 1229
NciI	CCSGG	1 cut(s)	1245
NdeII	GATC	5 cut(s)	65, 299, 735, 938, 1100
NlaIII	CATG	8 cut(s)	51, 149, 442, 580, 923, 995, 1026, 1158
NlaIV	GGNNCC	7 cut(s)	74, 121, 135, 333, 717, 1166, 1184
NsiI	ATGCAT	1 cut(s)	858
PagI	TCATGA	2 cut(s)	576, 1154
PctI	GAATGC	1 cut(s)	1200
PdmI	GAANNNNTTC	1 cut(s)	779
PkrI	GCNGC	5 cut(s)	516, 561, 705, 744, 1234
PleI	GAGTC	1 cut(s)	460
PpsI	GAGTC	1 cut(s)	460
PpuMI	RGGWCCY	2 cut(s)	134, 1183
PshAI	GACNNNNGTC	1 cut(s)	132
Psp5II	RGGWCCY	2 cut(s)	134, 1183
Psp6I	CCWGG	2 cut(s)	33, 876
PspGI	CCWGG	2 cut(s)	33, 876
PspN4I	GGNNCC	7 cut(s)	74, 121, 135, 333, 717, 1166, 1184
PspPI	GGNCC	5 cut(s)	134, 385, 612, 1017, 1183
PspPPI	RGGWCCY	2 cut(s)	134, 1183
PsuI	RGATCY	1 cut(s)	299
RsaI	GTAC	2 cut(s)	333, 949
RsaNI	GTAC	2 cut(s)	332, 948
RseI	CAYNNNNRTG	1 cut(s)	1159
SaqAI	TTAA	5 cut(s)	59, 98, 284, 304, 1290
SatI	GCNGC	5 cut(s)	515, 560, 704, 743, 1233
Sau3AI	GATC	5 cut(s)	65, 299, 735, 938, 1100
Sau96I	GGNCC	5 cut(s)	134, 385, 612, 1017, 1183
SchI	GAGTC	1 cut(s)	461
ScrFI	CCNGG	3 cut(s)	35, 878, 1245
SduI	GDGCHC	2 cut(s)	528, 919
SfaNI	GCATC	3 cut(s)	464, 526, 761
SfcI	CTRYAG	2 cut(s)	164, 677
SinI	GGWCC	3 cut(s)	134, 385, 1183
SmiMI	CAYNNNNRTG	1 cut(s)	1159
SmlI	CTYRAG	1 cut(s)	85
SmoI	CTYRAG	1 cut(s)	85
SpeI	ACTAGT	1 cut(s)	39
SsiI	CCGC	3 cut(s)	693, 1073, 1232
SspI	AATATT	1 cut(s)	185
SspMI	CTAG	3 cut(s)	40, 130, 262
StyD4I	CCNGG	3 cut(s)	33, 876, 1243
StyI	CCWWGG	2 cut(s)	1089, 1199
TaaI	ACNGT	5 cut(s)	154, 282, 726, 1146, 1161
TaiI	ACGT	2 cut(s)	773, 956
TaqI	TCGA	4 cut(s)	208, 629, 970, 1256
TatI	WGTACW	1 cut(s)	947
TauI	GCSGC	1 cut(s)	1235
Tru1I	TTAA	5 cut(s)	59, 98, 284, 304, 1290
Tru9I	TTAA	5 cut(s)	59, 98, 284, 304, 1290
TscAI	CASTG	3 cut(s)	159, 903, 1166
TseI	GCWGC	4 cut(s)	514, 559, 703, 742
TspDTI	ATGAA	4 cut(s)	477, 615, 801, 873
TspRI	CASTG	3 cut(s)	159, 903, 1166
VpaK11BI	GGWCC	3 cut(s)	134, 385, 1183
XapI	RAATTY	1 cut(s)	1285
XcmI	CCANNNNNNNNNTGG	2 cut(s)	499, 726
XmiI	GTMKAC	1 cut(s)	767
XmnI	GAANNNNTTC	1 cut(s)	779
XspI	CTAG	3 cut(s)	40, 130, 262
Zsp2I	ATGCAT	1 cut(s)	858

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.