Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0001163

Physical Location & Seq

Genomic Coordinates Forward (+)

57923166 .. 57923927

Gene Structure 762 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0418400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGGTGCATCAACGTAAAGAAGTTCGTCACGAATACAGAGTTAAGAGCAAAGAGACTGTGACTGTGCCAGTTGTGCAGCAAGCTAATGAAGCTCTGGAGAGTGGGCTTCAACACAAGGATTTGAATGTCCCTGGCCATCCCACTCAACAAATGGTGGTCCACGAGACTGAACAAAGTGGACAGCGGAACCTTGATATTGAACAAGCTCCAATGGTTCCGGTTGTTCATCCTAATGAACCTAATGTTGAGAAGAGTAACACTAGTATTCATGAGGTTCATATTGAGCAGTCATCCCAAGCTGAGGACGATTTAGCTATTATAGACTGTGTGAATAATATTGTGGAAGGTGCAGCTTCTGAATATATTGACCATATTGCTGATCAGGTGATGATGGAGAATGACAACCCTATTGACGGAGTGGTGGAGGATGTTCAGTCAGATGATTGTGGTGATGATTTTAATGGCAGAAATACTCCTAACCGATCTTGGAATGAGATTTTGGATGAAGAATGTGAGGCTAATACTGTTGCTCCTTTAAGCCCGCCCCCGGGCTTTGGTCCACAGGATTCTAGAGCAGCATTAGAAGTGGATGCAGTGGCTCGGTTTGTTAATGGAGCAGATGTTGACGGTTTTATTCCTGTTTTGATAAAGTCACAGCAAAAAGCTCAGGCAAAGCAGTTGAAGAAAATGACTTTGGCTTCTAGTACTAGAACTACTCCTTACCCTTCCCGGGTTCGTCATAAGCCTCAAAAGCTCCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005337 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0015858 GO:0015931 GO:0015932 GO:0016020 GO:0022857 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:1901264 GO:1901505 GO:1901642

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nucleoside_tran

Protein Analysis

253

Amino Acids

28.1

Weight (kDa)

4.92

Isoelectric Point (pI)

57.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001163)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61630 AT4G05110 AT4G05110 AT4G05110 AT4G05120 AT4G05120 AT4G05130 AT4G05140
fragaria_vesca	FvH4_3g03740 FvH4_3g03740 FvH4_3g03740 FvH4_3g03740 FvH4_3g03750 FvH4_5g10501
malus_domestica	MD05G1326900.v1.1 MD10G1305000.v1.1
prunus_persica	Prupe.4G034600_v2.0.a1
pyrus_communis	pycom05g30120 pycom10g25750
rosa_chinensis	RchiOBHm_Chr5g0005801 RchiOBHm_Chr5g0005811 RchiOBHm_Chr5g0005821 RchiOBHm_Chr7g0187631
rosa_laevigata	RLG00000004764 RLG00000031327 RLG00000031328 RLG00000031329
rosa_multiflora	Rmu_sc0002694.1_g000001
rosa_roxburghii	Rroxscaffold_1G00070040 Rroxscaffold_1G00070050 Rroxscaffold_1G00070060 Rroxscaffold_3G00267210
rosa_rugosa	Rorug04G0418200 Rorug04G0418300 Rorug04G0418400 Rorug04G0418500 Rorug04G0418500 Rorug04G0418600 Rorug04G0418700 Rorug06G0483300
rosa_samantha	Rh5AG045700 Rh5AG045800 Rh5AG045900 Rh5BG044400 Rh5BG044600 Rh5CG053200 Rh5CG053400 Rh5CG053500 Rh5DG044300 Rh7AG088200 Rh7BG089500 Rh7CG088800 Rh7DG090500
rosa_wichuraiana	Rw0G002660 Rw5G004600 Rw5G004610 Rw5G004620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	184, 542
AcoI	YGGCCR	1 cut(s)	133
AfaI	GTAC	1 cut(s)	706
AfiI	CCNNNNNNNGG	6 cut(s)	301, 413, 547, 548, 554, 730
AgsI	TTSAA	4 cut(s)	110, 124, 200, 682
AhlI	ACTAGT	1 cut(s)	260
AjnI	CCWGG	1 cut(s)	130
AjuI	GAANNNNNNNTTGG	4 cut(s)	482, 514, 677, 709
AluBI	AGCT	8 cut(s)	83, 92, 206, 299, 314, 353, 665, 754
AluI	AGCT	8 cut(s)	83, 92, 206, 299, 314, 353, 665, 754
Alw26I	GTCTC	2 cut(s)	47, 158
AlwNI	CAGNNNCTG	1 cut(s)	356
Ama87I	CYCGRG	2 cut(s)	547, 729
AoxI	GGCC	1 cut(s)	133
ApeKI	GCWGC	3 cut(s)	76, 350, 575
AspS9I	GGNCC	2 cut(s)	157, 557
AsuC2I	CCSGG	4 cut(s)	548, 549, 730, 731
AsuHPI	GGTGA	2 cut(s)	397, 461
AvaI	CYCGRG	2 cut(s)	547, 729
AvaII	GGWCC	2 cut(s)	157, 557
BalI	TGGCCA	1 cut(s)	135
BauI	CACGAG	1 cut(s)	161
BbvCI	CCTCAGC	1 cut(s)	300
BbvI	GCAGC	3 cut(s)	88, 362, 587
BccI	CCATC	2 cut(s)	144, 385
BciT130I	CCWGG	1 cut(s)	132
BclI	TGATCA	1 cut(s)	379
BcnI	CCSGG	4 cut(s)	548, 549, 730, 731
BcoDI	GTCTC	2 cut(s)	47, 158
BcuI	ACTAGT	1 cut(s)	260
BfaI	CTAG	4 cut(s)	261, 570, 702, 708
BisI	GCNGC	3 cut(s)	77, 351, 576
BlsI	GCNGC	3 cut(s)	78, 352, 577
BmcAI	AGTACT	1 cut(s)	706
Bme1390I	CCNGG	5 cut(s)	132, 548, 549, 730, 731
Bme18I	GGWCC	2 cut(s)	157, 557
BmeT110I	CYCGRG	2 cut(s)	547, 729
BmgT120I	GGNCC	2 cut(s)	157, 557
BmiI	GGNNCC	2 cut(s)	188, 216
BmrFI	CCNGG	5 cut(s)	132, 548, 549, 730, 731
BmsI	GCATC	2 cut(s)	16, 580
BpmI	CTGGAG	1 cut(s)	116
Bpu10I	CCTNAGC	2 cut(s)	300, 666
BpuMI	CCSGG	4 cut(s)	548, 549, 730, 731
BsaJI	CCNNGG	4 cut(s)	130, 546, 547, 729
BsaWI	WCCGGW	1 cut(s)	217
BsaXI	ACNNNNNCTCC	4 cut(s)	514, 544, 606, 636
Bsc4I	CCNNNNNNNGG	6 cut(s)	301, 413, 547, 548, 554, 730
Bse1I	ACTGG	1 cut(s)	68
BseBI	CCWGG	1 cut(s)	132
BseDI	CCNNGG	4 cut(s)	130, 546, 547, 729
BseGI	GGATG	6 cut(s)	136, 226, 290, 433, 508, 595
BseLI	CCNNNNNNNGG	6 cut(s)	301, 413, 547, 548, 554, 730
BseMII	CTCAG	2 cut(s)	291, 680
BseNI	ACTGG	1 cut(s)	68
BseXI	GCAGC	3 cut(s)	88, 362, 587
BsgI	GTGCAG	2 cut(s)	95, 369
BshFI	GGCC	1 cut(s)	135
BsiHKCI	CYCGRG	2 cut(s)	547, 729
BsiSI	CCGG	3 cut(s)	218, 548, 730
BslFI	GGGAC	1 cut(s)	113
BslI	CCNNNNNNNGG	6 cut(s)	301, 413, 547, 548, 554, 730
BsmAI	GTCTC	2 cut(s)	47, 158
BsmFI	GGGAC	1 cut(s)	113
BsnI	GGCC	1 cut(s)	135
BsoBI	CYCGRG	2 cut(s)	547, 729
Bsp143I	GATC	2 cut(s)	379, 482
BspACI	CCGC	2 cut(s)	184, 542
BspANI	GGCC	1 cut(s)	135
BspCNI	CTCAG	2 cut(s)	292, 679
BspHI	TCATGA	1 cut(s)	268
BspLI	GGNNCC	2 cut(s)	188, 216
BsrI	ACTGG	1 cut(s)	68
BssECI	CCNNGG	4 cut(s)	130, 546, 547, 729
BssMI	GATC	2 cut(s)	379, 482
BssSI	CACGAG	1 cut(s)	161
Bst2BI	CACGAG	1 cut(s)	161
Bst2UI	CCWGG	1 cut(s)	132
Bst4CI	ACNGT	5 cut(s)	58, 64, 326, 526, 629
Bst6I	CTCTTC	1 cut(s)	245
BstC8I	GCNNGC	2 cut(s)	81, 542
BstDEI	CTNAG	2 cut(s)	300, 666
BstF5I	GGATG	6 cut(s)	136, 226, 290, 433, 508, 595
BstKTI	GATC	2 cut(s)	382, 485
BstMAI	GTCTC	2 cut(s)	47, 158
BstMBI	GATC	2 cut(s)	379, 482
BstMWI	GCNNNNNNNGC	3 cut(s)	73, 89, 751
BstNI	CCWGG	1 cut(s)	132
BstSCI	CCNGG	5 cut(s)	130, 546, 547, 728, 729
BstV1I	GCAGC	3 cut(s)	88, 362, 587
BsuRI	GGCC	1 cut(s)	135
BtsCI	GGATG	6 cut(s)	136, 226, 290, 433, 508, 595
BtsI	GCAGTG	1 cut(s)	600
BtsIMutI	CAGTG	1 cut(s)	600
Cac8I	GCNNGC	2 cut(s)	81, 542
CaiI	CAGNNNCTG	1 cut(s)	356
CciI	TCATGA	1 cut(s)	268
Cfr13I	GGNCC	2 cut(s)	157, 557
Cfr9I	CCCGGG	2 cut(s)	547, 729
Csp6I	GTAC	1 cut(s)	705
CviAII	CATG	1 cut(s)	269
CviQI	GTAC	1 cut(s)	705
DdeI	CTNAG	2 cut(s)	300, 666
DpnI	GATC	2 cut(s)	381, 484
DpnII	GATC	2 cut(s)	379, 482
EaeI	YGGCCR	1 cut(s)	133
Eam1104I	CTCTTC	1 cut(s)	245
EarI	CTCTTC	1 cut(s)	245
Eco47I	GGWCC	2 cut(s)	157, 557
Eco88I	CYCGRG	2 cut(s)	547, 729
EcoRII	CCWGG	1 cut(s)	130
FaeI	CATG	1 cut(s)	272
FaiI	YATR	6 cut(s)	270, 279, 320, 363, 372, 741
FaqI	GGGAC	1 cut(s)	113
FatI	CATG	1 cut(s)	268
FauI	CCCGC	1 cut(s)	549
FbaI	TGATCA	1 cut(s)	379
Fnu4HI	GCNGC	3 cut(s)	77, 351, 576
FokI	GGATG	6 cut(s)	123, 213, 277, 440, 515, 602
Fsp4HI	GCNGC	3 cut(s)	77, 351, 576
FspBI	CTAG	4 cut(s)	261, 570, 702, 708
GluI	GCNGC	3 cut(s)	77, 351, 576
GsuI	CTGGAG	1 cut(s)	116
HaeIII	GGCC	1 cut(s)	135
HapII	CCGG	3 cut(s)	218, 548, 730
Hin1II	CATG	1 cut(s)	272
HincII	GTYRAC	1 cut(s)	625
HindII	GTYRAC	1 cut(s)	625
HinfI	GANTC	1 cut(s)	566
HpaII	CCGG	3 cut(s)	218, 548, 730
HphI	GGTGA	2 cut(s)	397, 461
Hpy166II	GTNNAC	4 cut(s)	160, 179, 560, 625
Hpy188I	TCNGA	3 cut(s)	358, 439, 758
Hpy188III	TCNNGA	4 cut(s)	29, 95, 269, 570
Hpy8I	GTNNAC	4 cut(s)	160, 179, 560, 625
HpyAV	CCTTC	2 cut(s)	338, 735
HpyCH4III	ACNGT	5 cut(s)	58, 64, 326, 526, 629
HpyCH4IV	ACGT	1 cut(s)	13
HpyCH4V	TGCA	4 cut(s)	7, 76, 350, 593
HpyF10VI	GCNNNNNNNGC	3 cut(s)	73, 89, 751
HpyF3I	CTNAG	2 cut(s)	300, 666
HpySE526I	ACGT	1 cut(s)	13
Hsp92II	CATG	1 cut(s)	272
Ksp22I	TGATCA	1 cut(s)	379
Kzo9I	GATC	2 cut(s)	379, 482
LmnI	GCTCC	4 cut(s)	211, 535, 614, 759
Lsp1109I	GCAGC	3 cut(s)	88, 362, 587
LweI	GCATC	2 cut(s)	16, 580
MaeI	CTAG	4 cut(s)	261, 570, 702, 708
MaeII	ACGT	1 cut(s)	13
MaeIII	GTNAC	4 cut(s)	26, 58, 254, 651
MalI	GATC	2 cut(s)	381, 484
MboI	GATC	2 cut(s)	379, 482
MboII	GAAGA	3 cut(s)	262, 518, 694
MlsI	TGGCCA	1 cut(s)	135
MluNI	TGGCCA	1 cut(s)	135
MnlI	CCTC	5 cut(s)	265, 295, 418, 508, 756
Mox20I	TGGCCA	1 cut(s)	135
MscI	TGGCCA	1 cut(s)	135
MseI	TTAA	4 cut(s)	42, 459, 536, 609
MslI	CAYNNNNRTG	1 cut(s)	231
Msp20I	TGGCCA	1 cut(s)	135
MspA1I	CMGCKG	1 cut(s)	184
MspI	CCGG	3 cut(s)	218, 548, 730
MspR9I	CCNGG	5 cut(s)	132, 548, 549, 730, 731
MvaI	CCWGG	1 cut(s)	132
MwoI	GCNNNNNNNGC	3 cut(s)	73, 89, 751
NciI	CCSGG	4 cut(s)	548, 549, 730, 731
NdeII	GATC	2 cut(s)	379, 482
NlaIII	CATG	1 cut(s)	272
NlaIV	GGNNCC	2 cut(s)	188, 216
NmuCI	GTSAC	3 cut(s)	26, 58, 651
PagI	TCATGA	1 cut(s)	268
PfeI	GAWTC	1 cut(s)	566
PkrI	GCNGC	3 cut(s)	78, 352, 577
Psp6I	CCWGG	1 cut(s)	130
PspGI	CCWGG	1 cut(s)	130
PspN4I	GGNNCC	2 cut(s)	188, 216
PspPI	GGNCC	2 cut(s)	157, 557
PstNI	CAGNNNCTG	1 cut(s)	356
RsaI	GTAC	1 cut(s)	706
RsaNI	GTAC	1 cut(s)	705
RseI	CAYNNNNRTG	1 cut(s)	231
SaqAI	TTAA	4 cut(s)	42, 459, 536, 609
SatI	GCNGC	3 cut(s)	77, 351, 576
Sau3AI	GATC	2 cut(s)	379, 482
Sau96I	GGNCC	2 cut(s)	157, 557
ScaI	AGTACT	1 cut(s)	706
ScrFI	CCNGG	5 cut(s)	132, 548, 549, 730, 731
SfaNI	GCATC	2 cut(s)	16, 580
SinI	GGWCC	2 cut(s)	157, 557
SmaI	CCCGGG	2 cut(s)	549, 731
SmiMI	CAYNNNNRTG	1 cut(s)	231
SpeI	ACTAGT	1 cut(s)	260
SsiI	CCGC	2 cut(s)	184, 542
SspI	AATATT	1 cut(s)	337
SspMI	CTAG	4 cut(s)	261, 570, 702, 708
StyD4I	CCNGG	5 cut(s)	130, 546, 547, 728, 729
TaaI	ACNGT	5 cut(s)	58, 64, 326, 526, 629
TaiI	ACGT	1 cut(s)	16
TatI	WGTACW	1 cut(s)	704
TfiI	GAWTC	1 cut(s)	566
Tru1I	TTAA	4 cut(s)	42, 459, 536, 609
Tru9I	TTAA	4 cut(s)	42, 459, 536, 609
TscAI	CASTG	1 cut(s)	600
TseFI	GTSAC	3 cut(s)	26, 58, 651
TseI	GCWGC	3 cut(s)	76, 350, 575
Tsp45I	GTSAC	3 cut(s)	26, 58, 651
TspDTI	ATGAA	6 cut(s)	102, 215, 249, 257, 266, 519
TspGWI	ACGGA	1 cut(s)	429
TspMI	CCCGGG	2 cut(s)	547, 729
TspRI	CASTG	1 cut(s)	600
VpaK11BI	GGWCC	2 cut(s)	157, 557
XbaI	TCTAGA	1 cut(s)	569
XcmI	CCANNNNNNNNNTGG	1 cut(s)	148
XmaI	CCCGGG	2 cut(s)	547, 729
XspI	CTAG	4 cut(s)	261, 570, 702, 708
ZrmI	AGTACT	1 cut(s)	706

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.