Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001163

Physical Location & Seq

Genomic Coordinates Reverse (-)

90889399 .. 90896152

Gene Structure 6754 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00070040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGGTCTTCGCAAGGGAGCTAGTACGCAAATTTTCTGTATTAAAACGACTGCTTGTGTTGTTCTTGGGAATTTCCACATTCATTGAGCTTTTGTGTGTTCTATCATATGCAATTAACTTCCCAAGATTGCCTATAGTAAAGTATTACAGCTCAAAGGCAGCCTCAGAAGGTTCTAAAACAGTATCAGCTGATCTTGCCGCTGCTGGCATTCAAAAACAAGCATCAGATACAGAAGTCCAAAATGATGCTAACCTTCCACATAGATTGAGCAATAAACAATTATTGGTACAAAATATCGATTATGCTCTTGACTTGTTCCTCATATATGTACTGACATTGTCAATCTTCCCTTGTTTCATATTCGAAAATACTGGAGTGCACGAGTTAGGCTCATGGTATCCCCTTGTTCAAGTGGCAATGTTCAATATGTTGGATTTGATATCAAGATACATACCTGTTGTGCAATTCCTAAAGATCGAATCCAGAAAGGGTCTCATGGTTGCAACCCTAGCTCGTTTTTTATTAATTCCTGCATTCTACTTCACCGCAAAATATGGTGACCAGGGATGGATGATTATGCTCACATCAGTCCAAGGATTTACAAATGGTTATCTCAGTGTCTGTGTAATGACAGTAGTACCACACGGTTATAAGGGACCTGAGCAAAATGCCTTGGGAAACATTCTTGTGCTGTGTCTTTTGTGTGGCACATTCGTAGGGGGTTGCCTTAACTGGTTATGGCTCATTGGTAAAGACACATATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005337 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0015858 GO:0015931 GO:0015932 GO:0016020 GO:0022857 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:1901264 GO:1901505 GO:1901642

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nucleoside_tran

Protein Analysis

254

Amino Acids

28.46

Weight (kDa)

8.68

Isoelectric Point (pI)

31.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nucleoside_tran	PF01733	16 - 247	1.9e-19	Nucleoside transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001163)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61630 AT4G05110 AT4G05110 AT4G05110 AT4G05120 AT4G05120 AT4G05130 AT4G05140
fragaria_vesca	FvH4_3g03740 FvH4_3g03740 FvH4_3g03740 FvH4_3g03740 FvH4_3g03750 FvH4_5g10501
malus_domestica	MD05G1326900.v1.1 MD10G1305000.v1.1
prunus_persica	Prupe.4G034600_v2.0.a1
pyrus_communis	pycom05g30120 pycom10g25750
rosa_chinensis	RchiOBHm_Chr5g0005801 RchiOBHm_Chr5g0005811 RchiOBHm_Chr5g0005821 RchiOBHm_Chr7g0187631
rosa_laevigata	RLG00000004764 RLG00000031327 RLG00000031328 RLG00000031329
rosa_multiflora	Rmu_sc0002694.1_g000001
rosa_roxburghii	Rroxscaffold_1G00070040 Rroxscaffold_1G00070050 Rroxscaffold_1G00070060 Rroxscaffold_3G00267210
rosa_rugosa	Rorug04G0418200 Rorug04G0418300 Rorug04G0418400 Rorug04G0418500 Rorug04G0418500 Rorug04G0418600 Rorug04G0418700 Rorug06G0483300
rosa_samantha	Rh5AG045700 Rh5AG045800 Rh5AG045900 Rh5BG044400 Rh5BG044600 Rh5CG053200 Rh5CG053400 Rh5CG053500 Rh5DG044300 Rh7AG088200 Rh7BG089500 Rh7CG088800 Rh7DG090500
rosa_wichuraiana	Rw0G002660 Rw5G004600 Rw5G004610 Rw5G004620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	651
AciI	CCGC	2 cut(s)	198, 546
AcsI	RAATTY	2 cut(s)	29, 69
AfaI	GTAC	4 cut(s)	24, 288, 330, 639
AgsI	TTSAA	3 cut(s)	212, 410, 424
AjnI	CCWGG	1 cut(s)	561
AluBI	AGCT	5 cut(s)	19, 88, 150, 188, 512
AluI	AGCT	5 cut(s)	19, 88, 150, 188, 512
Alw21I	GWGCWC	1 cut(s)	381
Alw26I	GTCTC	1 cut(s)	497
Alw44I	GTGCAC	1 cut(s)	377
AlwNI	CAGNNNCTG	1 cut(s)	621
ApaLI	GTGCAC	1 cut(s)	377
ApeKI	GCWGC	2 cut(s)	158, 200
ApoI	RAATTY	2 cut(s)	29, 69
AseI	ATTAAT	1 cut(s)	524
AspS9I	GGNCC	1 cut(s)	656
AsuHPI	GGTGA	2 cut(s)	535, 569
AsuII	TTCGAA	1 cut(s)	363
AvaII	GGWCC	1 cut(s)	656
BaeGI	GKGCMC	1 cut(s)	381
BaeI	ACNNNNGTAYC	4 cut(s)	219, 252, 621, 654
BauI	CACGAG	1 cut(s)	380
Bbv12I	GWGCWC	1 cut(s)	381
BbvI	GCAGC	2 cut(s)	170, 187
BccI	CCATC	1 cut(s)	561
BciT130I	CCWGG	1 cut(s)	563
BciVI	GTATCC	1 cut(s)	408
BcoDI	GTCTC	1 cut(s)	497
BfaI	CTAG	2 cut(s)	20, 509
BfmI	CTRYAG	1 cut(s)	132
BfuI	GTATCC	1 cut(s)	408
BisI	GCNGC	3 cut(s)	159, 198, 201
BlsI	GCNGC	3 cut(s)	160, 199, 202
Bme1390I	CCNGG	1 cut(s)	563
Bme18I	GGWCC	1 cut(s)	656
BmgT120I	GGNCC	1 cut(s)	656
BmiI	GGNNCC	1 cut(s)	657
BmrFI	CCNGG	1 cut(s)	563
BmsI	GCATC	2 cut(s)	230, 235
BplI	GAGNNNNNCTC	2 cut(s)	374, 406
BpmI	CTGGAG	1 cut(s)	393
Bpu10I	CCTNAGC	1 cut(s)	660
Bpu14I	TTCGAA	1 cut(s)	363
Bsa29I	ATCGAT	1 cut(s)	297
BsaI	GGTCTC	1 cut(s)	497
BsaJI	CCNNGG	3 cut(s)	562, 592, 672
Bse1I	ACTGG	2 cut(s)	376, 737
Bse3DI	GCAATG	1 cut(s)	423
BseBI	CCWGG	1 cut(s)	563
BseCI	ATCGAT	1 cut(s)	297
BseDI	CCNNGG	3 cut(s)	562, 592, 672
BseGI	GGATG	2 cut(s)	572, 576
BseMI	GCAATG	1 cut(s)	423
BseMII	CTCAG	3 cut(s)	177, 628, 651
BseNI	ACTGG	2 cut(s)	376, 737
BseSI	GKGCMC	1 cut(s)	381
BseXI	GCAGC	2 cut(s)	170, 187
BshVI	ATCGAT	1 cut(s)	297
BsiHKAI	GWGCWC	1 cut(s)	381
BslFI	GGGAC	1 cut(s)	669
BsmAI	GTCTC	1 cut(s)	497
BsmFI	GGGAC	1 cut(s)	669
BsmI	GAATGC	2 cut(s)	207, 533
Bso31I	GGTCTC	1 cut(s)	497
Bsp119I	TTCGAA	1 cut(s)	363
Bsp1286I	GDGCHC	1 cut(s)	381
Bsp143I	GATC	2 cut(s)	190, 474
BspACI	CCGC	2 cut(s)	198, 546
BspCNI	CTCAG	3 cut(s)	176, 627, 652
BspDI	ATCGAT	1 cut(s)	297
BspLI	GGNNCC	1 cut(s)	657
BspT104I	TTCGAA	1 cut(s)	363
BspTNI	GGTCTC	1 cut(s)	497
BsrDI	GCAATG	1 cut(s)	423
BsrI	ACTGG	2 cut(s)	376, 737
BssECI	CCNNGG	3 cut(s)	562, 592, 672
BssMI	GATC	2 cut(s)	190, 474
BssSI	CACGAG	1 cut(s)	380
BssT1I	CCWWGG	2 cut(s)	592, 672
Bst2BI	CACGAG	1 cut(s)	380
Bst2UI	CCWGG	1 cut(s)	563
Bst4CI	ACNGT	3 cut(s)	181, 634, 647
BstBI	TTCGAA	1 cut(s)	363
BstC8I	GCNNGC	1 cut(s)	205
BstDEI	CTNAG	3 cut(s)	163, 614, 660
BstEII	GGTNACC	1 cut(s)	557
BstF5I	GGATG	2 cut(s)	572, 576
BstKTI	GATC	2 cut(s)	193, 477
BstMAI	GTCTC	1 cut(s)	497
BstMBI	GATC	2 cut(s)	190, 474
BstMWI	GCNNNNNNNGC	2 cut(s)	194, 509
BstNI	CCWGG	1 cut(s)	563
BstPI	GGTNACC	1 cut(s)	557
BstSCI	CCNGG	1 cut(s)	561
BstSFI	CTRYAG	1 cut(s)	132
BstSLI	GKGCMC	1 cut(s)	381
BstV1I	GCAGC	2 cut(s)	170, 187
Bsu15I	ATCGAT	1 cut(s)	297
BsuI	GTATCC	1 cut(s)	408
BsuTUI	ATCGAT	1 cut(s)	297
BtsCI	GGATG	2 cut(s)	572, 576
BtsIMutI	CAGTG	1 cut(s)	622
Cac8I	GCNNGC	1 cut(s)	205
CaiI	CAGNNNCTG	1 cut(s)	621
Cfr13I	GGNCC	1 cut(s)	656
ClaI	ATCGAT	1 cut(s)	297
Csp6I	GTAC	4 cut(s)	23, 287, 329, 638
CspCI	CAANNNNNGTGG	4 cut(s)	64, 99, 246, 281
CviAII	CATG	2 cut(s)	393, 496
CviJI	RGCY	8 cut(s)	19, 88, 150, 161, 188, 390, 512, 742
CviKI_1	RGCY	8 cut(s)	19, 88, 150, 161, 188, 390, 512, 742
CviQI	GTAC	4 cut(s)	23, 287, 329, 638
DdeI	CTNAG	3 cut(s)	163, 614, 660
DpnI	GATC	2 cut(s)	192, 476
DpnII	GATC	2 cut(s)	190, 474
Eco130I	CCWWGG	2 cut(s)	592, 672
Eco31I	GGTCTC	1 cut(s)	497
Eco32I	GATATC	1 cut(s)	441
Eco47I	GGWCC	1 cut(s)	656
Eco91I	GGTNACC	1 cut(s)	557
EcoO109I	RGGNCCY	1 cut(s)	656
EcoO65I	GGTNACC	1 cut(s)	557
EcoRII	CCWGG	1 cut(s)	561
EcoRV	GATATC	1 cut(s)	441
EcoT14I	CCWWGG	2 cut(s)	592, 672
ErhI	CCWWGG	2 cut(s)	592, 672
FaeI	CATG	2 cut(s)	396, 499
FaqI	GGGAC	1 cut(s)	669
FatI	CATG	2 cut(s)	392, 495
FauNDI	CATATG	1 cut(s)	106
Fnu4HI	GCNGC	3 cut(s)	159, 198, 201
FokI	GGATG	2 cut(s)	579, 583
Fsp4HI	GCNGC	3 cut(s)	159, 198, 201
FspBI	CTAG	2 cut(s)	20, 509
GluI	GCNGC	3 cut(s)	159, 198, 201
GsuI	CTGGAG	1 cut(s)	393
Hin1II	CATG	2 cut(s)	396, 499
HinfI	GANTC	1 cut(s)	479
HphI	GGTGA	2 cut(s)	535, 569
Hpy166II	GTNNAC	1 cut(s)	379
Hpy188I	TCNGA	2 cut(s)	166, 226
Hpy188III	TCNNGA	3 cut(s)	308, 444, 483
Hpy8I	GTNNAC	1 cut(s)	379
HpyAV	CCTTC	2 cut(s)	161, 263
HpyCH4III	ACNGT	3 cut(s)	181, 634, 647
HpyCH4V	TGCA	5 cut(s)	110, 379, 463, 503, 533
HpyF10VI	GCNNNNNNNGC	2 cut(s)	194, 509
HpyF3I	CTNAG	3 cut(s)	163, 614, 660
Hsp92II	CATG	2 cut(s)	396, 499
Kzo9I	GATC	2 cut(s)	190, 474
LmnI	GCTCC	1 cut(s)	16
LpnPI	CCDG	9 cut(s)	189, 357, 468, 496, 543, 548, 575, 672, 718
Lsp1109I	GCAGC	2 cut(s)	170, 187
LweI	GCATC	2 cut(s)	230, 235
MaeI	CTAG	2 cut(s)	20, 509
MaeIII	GTNAC	1 cut(s)	557
MalI	GATC	2 cut(s)	192, 476
MboI	GATC	2 cut(s)	190, 474
MboII	GAAGA	1 cut(s)	337
MhlI	GDGCHC	1 cut(s)	381
MluCI	AATT	6 cut(s)	29, 69, 111, 278, 464, 525
MmeI	TCCRAC	1 cut(s)	411
MnlI	CCTC	2 cut(s)	172, 329
MseI	TTAA	5 cut(s)	41, 114, 524, 729, 763
MslI	CAYNNNNRTG	1 cut(s)	686
MspA1I	CMGCKG	2 cut(s)	188, 200
MspR9I	CCNGG	1 cut(s)	563
Mva1269I	GAATGC	2 cut(s)	207, 533
MvaI	CCWGG	1 cut(s)	563
MwoI	GCNNNNNNNGC	2 cut(s)	194, 509
NdeI	CATATG	1 cut(s)	106
NdeII	GATC	2 cut(s)	190, 474
NlaIII	CATG	2 cut(s)	396, 499
NlaIV	GGNNCC	1 cut(s)	657
NmuCI	GTSAC	1 cut(s)	557
NspV	TTCGAA	1 cut(s)	363
PctI	GAATGC	2 cut(s)	207, 533
PfeI	GAWTC	1 cut(s)	479
PflFI	GACNNNGTC	1 cut(s)	337
PkrI	GCNGC	3 cut(s)	160, 199, 202
PpuMI	RGGWCCY	1 cut(s)	656
PshBI	ATTAAT	1 cut(s)	524
PsiI	TTATAA	1 cut(s)	651
Psp5II	RGGWCCY	1 cut(s)	656
Psp6I	CCWGG	1 cut(s)	561
PspEI	GGTNACC	1 cut(s)	557
PspGI	CCWGG	1 cut(s)	561
PspN4I	GGNNCC	1 cut(s)	657
PspPI	GGNCC	1 cut(s)	656
PspPPI	RGGWCCY	1 cut(s)	656
PstNI	CAGNNNCTG	1 cut(s)	621
PsyI	GACNNNGTC	1 cut(s)	337
PvuII	CAGCTG	1 cut(s)	188
RsaI	GTAC	4 cut(s)	24, 288, 330, 639
RsaNI	GTAC	4 cut(s)	23, 287, 329, 638
RseI	CAYNNNNRTG	1 cut(s)	686
SaqAI	TTAA	5 cut(s)	41, 114, 524, 729, 763
SatI	GCNGC	3 cut(s)	159, 198, 201
Sau3AI	GATC	2 cut(s)	190, 474
Sau96I	GGNCC	1 cut(s)	656
ScrFI	CCNGG	1 cut(s)	563
SduI	GDGCHC	1 cut(s)	381
SetI	ASST	9 cut(s)	21, 90, 152, 172, 190, 255, 457, 514, 661
SfaNI	GCATC	2 cut(s)	230, 235
SfcI	CTRYAG	1 cut(s)	132
SfuI	TTCGAA	1 cut(s)	363
SinI	GGWCC	1 cut(s)	656
SmiMI	CAYNNNNRTG	1 cut(s)	686
Sse9I	AATT	6 cut(s)	29, 69, 111, 278, 464, 525
SsiI	CCGC	2 cut(s)	198, 546
SspMI	CTAG	2 cut(s)	20, 509
StyD4I	CCNGG	1 cut(s)	561
StyI	CCWWGG	2 cut(s)	592, 672
TaaI	ACNGT	3 cut(s)	181, 634, 647
TaqI	TCGA	3 cut(s)	297, 363, 477
TasI	AATT	6 cut(s)	29, 69, 111, 278, 464, 525
TatI	WGTACW	1 cut(s)	328
TauI	GCSGC	1 cut(s)	200
TfiI	GAWTC	1 cut(s)	479
Tru1I	TTAA	5 cut(s)	41, 114, 524, 729, 763
Tru9I	TTAA	5 cut(s)	41, 114, 524, 729, 763
TscAI	CASTG	1 cut(s)	622
TseFI	GTSAC	1 cut(s)	557
TseI	GCWGC	2 cut(s)	158, 200
Tsp45I	GTSAC	1 cut(s)	557
TspDTI	ATGAA	2 cut(s)	70, 346
TspRI	CASTG	1 cut(s)	622
Tth111I	GACNNNGTC	1 cut(s)	337
VneI	GTGCAC	1 cut(s)	377
VpaK11BI	GGWCC	1 cut(s)	656
VspI	ATTAAT	1 cut(s)	524
XapI	RAATTY	2 cut(s)	29, 69
XspI	CTAG	2 cut(s)	20, 509

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.