Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0001163

Physical Location & Seq

Genomic Coordinates Forward (+)

4137042 .. 4157022

Gene Structure 19981 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031329

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

ATGGCAGTTTGTTGGGTTCTTGGACTAGGGACTCTATTTGCATGGAACAGTATGGTGACTATAGCAGATTACTATTATACTGTATTTCCGGAATACCATCCTTCACGGGTTCTTACCTGTCTTTATCAACCATTTGCACTTGCAGCATTGGCAATATTTTTATACAATGAGGCAGAAGTTGATACAAGAAGGAGGATCTTAGTTGGTTACACTCTCTTCTTCCTTGGTACCTTTATTCTAATAATTGTAGATTTAGCTACATCTGGGACTGGAGGAATTGGATATTTTATTAGTATATGCGCAATTGTTGGTGCATTTGGGGTTGCAAGTGCCCATGTTGAAGGTGGAGTTGTGGGTGAGCTATCTTTTATGTGCCCTGAATTCATCCAGGTTGATCTTTTATTGTTGTTCTTGGCAACTTCCACATTCATTGAGCTTCTCTGTATACTTTTATATGCAATTTACTTCCCAAGATTGCCTATAGTAAAGTACTACCGCTCAAAGGCAGCCTCAGAAGGCTCTACAACTGTATCCGCTGATCTCGCCGCTGCTGGCATTCAGGAACATGCATCAGATATAGAAGGACAGATTACAACTTTCTCTAGTCCTTTTGTCCATATTGATGCTTACCTACCAATTAGATTGAGCAATAAGCACTTATTTGTGCAAAATATAGATTATGGTCTTGACTTGTTTCTAATATATGCACTGACCTACTCAATCTTCCCCAGTTTCATGTTTGAAAATACTGGAGAACACCAGTTAGGCTCATGGTATCCACTTGTTCTGGTGGCAATGTTCAATATGATGGATTTGATATCAAGATACATACCTGTAGTGCAATTCCTAAAGATTGAATCCAGAAAGAGTCTCATGATTGCAACCCTATCTTGTATTTTATTCGTTCCTGCATTCTGCTTCACCGCAAAATATGGCAACCAGGGATGGATGATCATGCTCACATTAGTCCTAGGATTCACAAATGGTTATCTCAGTGTCTGTGTAGTGACAGTGGCACCATGCGGTTACAAGGGACCCGAGCAAAATGCCTTGGGGAACATCCTTGTGCTGTGTCTTTTGTCTGGCATACTTGTGGGGGGTTGCCTTGGCTGGTTATGGCTCCTTGGTAAAGACACATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005337 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0015858 GO:0015931 GO:0015932 GO:0016020 GO:0022857 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:1901264 GO:1901505 GO:1901642

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nucleoside_tran

Protein Analysis

381

Amino Acids

42.02

Weight (kDa)

5.2

Isoelectric Point (pI)

36.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nucleoside_tran	PF01733	135 - 373	1.1e-16	Nucleoside transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001163)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61630 AT4G05110 AT4G05110 AT4G05110 AT4G05120 AT4G05120 AT4G05130 AT4G05140
fragaria_vesca	FvH4_3g03740 FvH4_3g03740 FvH4_3g03740 FvH4_3g03740 FvH4_3g03750 FvH4_5g10501
malus_domestica	MD05G1326900.v1.1 MD10G1305000.v1.1
prunus_persica	Prupe.4G034600_v2.0.a1
pyrus_communis	pycom05g30120 pycom10g25750
rosa_chinensis	RchiOBHm_Chr5g0005801 RchiOBHm_Chr5g0005811 RchiOBHm_Chr5g0005821 RchiOBHm_Chr7g0187631
rosa_laevigata	RLG00000004764 RLG00000031327 RLG00000031328 RLG00000031329
rosa_multiflora	Rmu_sc0002694.1_g000001
rosa_roxburghii	Rroxscaffold_1G00070040 Rroxscaffold_1G00070050 Rroxscaffold_1G00070060 Rroxscaffold_3G00267210
rosa_rugosa	Rorug04G0418200 Rorug04G0418300 Rorug04G0418400 Rorug04G0418500 Rorug04G0418500 Rorug04G0418600 Rorug04G0418700 Rorug06G0483300
rosa_samantha	Rh5AG045700 Rh5AG045800 Rh5AG045900 Rh5BG044400 Rh5BG044600 Rh5CG053200 Rh5CG053400 Rh5CG053500 Rh5DG044300 Rh7AG088200 Rh7BG089500 Rh7CG088800 Rh7DG090500
rosa_wichuraiana	Rw0G002660 Rw5G004600 Rw5G004610 Rw5G004620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	301
Acc65I	GGTACC	1 cut(s)	227
AccB1I	GGYRCC	2 cut(s)	227, 1015
AccBSI	CCGCTC	1 cut(s)	498
AccI	GTMKAC	1 cut(s)	445
AccIII	TCCGGA	1 cut(s)	88
AciI	CCGC	5 cut(s)	496, 534, 546, 924, 1023
AclWI	GGATC	1 cut(s)	203
AcsI	RAATTY	1 cut(s)	380
AfaI	GTAC	2 cut(s)	229, 491
AfiI	CCNNNNNNNGG	1 cut(s)	502
AgsI	TTSAA	4 cut(s)	341, 743, 802, 857
AjnI	CCWGG	2 cut(s)	387, 939
AluBI	AGCT	3 cut(s)	257, 361, 436
AluI	AGCT	3 cut(s)	257, 361, 436
Alw26I	GTCTC	1 cut(s)	875
AlwI	GGATC	1 cut(s)	203
AlwNI	CAGNNNCTG	1 cut(s)	999
Ama87I	CYCGRG	1 cut(s)	1037
Aor13HI	TCCGGA	1 cut(s)	88
ApeKI	GCWGC	3 cut(s)	143, 506, 548
ApoI	RAATTY	1 cut(s)	380
Asp718I	GGTACC	1 cut(s)	227
AspA2I	CCTAGG	1 cut(s)	970
AspLEI	GCGC	1 cut(s)	302
AspS9I	GGNCC	1 cut(s)	1034
AsuHPI	GGTGA	3 cut(s)	67, 368, 913
AvaI	CYCGRG	1 cut(s)	1037
AvaII	GGWCC	1 cut(s)	1034
AvrII	CCTAGG	1 cut(s)	970
BaeGI	GKGCMC	2 cut(s)	334, 377
BaeI	ACNNNNGTAYC	2 cut(s)	513, 546
BanI	GGYRCC	2 cut(s)	227, 1015
BbvI	GCAGC	3 cut(s)	155, 518, 535
BccI	CCATC	3 cut(s)	105, 802, 939
BcgI	CGANNNNNNTGC	2 cut(s)	1028, 1062
BciT130I	CCWGG	2 cut(s)	389, 941
BciVI	GTATCC	2 cut(s)	541, 786
BclI	TGATCA	1 cut(s)	951
BcoDI	GTCTC	1 cut(s)	875
BfaI	CTAG	3 cut(s)	26, 603, 971
BfmI	CTRYAG	3 cut(s)	60, 480, 834
BfuI	GTATCC	2 cut(s)	541, 786
BisI	GCNGC	4 cut(s)	144, 507, 546, 549
BlnI	CCTAGG	1 cut(s)	970
BlsI	GCNGC	4 cut(s)	145, 508, 547, 550
BmcAI	AGTACT	1 cut(s)	491
Bme1390I	CCNGG	2 cut(s)	389, 941
Bme18I	GGWCC	1 cut(s)	1034
BmeT110I	CYCGRG	1 cut(s)	1037
BmgT120I	GGNCC	1 cut(s)	1034
BmiI	GGNNCC	5 cut(s)	229, 1017, 1035, 1036, 1121
BmrFI	CCNGG	2 cut(s)	389, 941
BmrI	ACTGGG	1 cut(s)	723
BmsI	GCATC	2 cut(s)	578, 613
BmuI	ACTGGG	1 cut(s)	723
BpmI	CTGGAG	2 cut(s)	291, 771
BsaJI	CCNNGG	6 cut(s)	223, 940, 970, 1050, 1105, 1123
BsaWI	WCCGGW	1 cut(s)	88
Bsc4I	CCNNNNNNNGG	1 cut(s)	502
Bse1I	ACTGG	4 cut(s)	274, 729, 754, 760
Bse3DI	GCAATG	1 cut(s)	801
BseAI	TCCGGA	1 cut(s)	88
BseBI	CCWGG	2 cut(s)	389, 941
BseDI	CCNNGG	6 cut(s)	223, 940, 970, 1050, 1105, 1123
BseGI	GGATG	5 cut(s)	97, 384, 950, 954, 1059
BseLI	CCNNNNNNNGG	1 cut(s)	502
BseMI	GCAATG	1 cut(s)	801
BseMII	CTCAG	2 cut(s)	525, 1006
BseNI	ACTGG	4 cut(s)	274, 729, 754, 760
BseSI	GKGCMC	2 cut(s)	334, 377
BseXI	GCAGC	3 cut(s)	155, 518, 535
BshNI	GGYRCC	2 cut(s)	227, 1015
BsiHKCI	CYCGRG	1 cut(s)	1037
BsiSI	CCGG	1 cut(s)	89
BslFI	GGGAC	3 cut(s)	43, 280, 1047
BslI	CCNNNNNNNGG	1 cut(s)	502
BsmAI	GTCTC	1 cut(s)	875
BsmFI	GGGAC	3 cut(s)	43, 280, 1047
BsmI	GAATGC	2 cut(s)	555, 911
BsoBI	CYCGRG	1 cut(s)	1037
Bsp1286I	GDGCHC	2 cut(s)	334, 377
Bsp13I	TCCGGA	1 cut(s)	88
Bsp143I	GATC	4 cut(s)	195, 394, 538, 951
BspACI	CCGC	5 cut(s)	496, 534, 546, 924, 1023
BspCNI	CTCAG	2 cut(s)	524, 1005
BspEI	TCCGGA	1 cut(s)	88
BspHI	TCATGA	1 cut(s)	873
BspLI	GGNNCC	5 cut(s)	229, 1017, 1035, 1036, 1121
BspPI	GGATC	1 cut(s)	203
BspT107I	GGYRCC	2 cut(s)	227, 1015
BsrBI	CCGCTC	1 cut(s)	498
BsrDI	GCAATG	1 cut(s)	801
BsrI	ACTGG	4 cut(s)	274, 729, 754, 760
BssECI	CCNNGG	6 cut(s)	223, 940, 970, 1050, 1105, 1123
BssMI	GATC	4 cut(s)	195, 394, 538, 951
BssNAI	GTATAC	1 cut(s)	446
BssT1I	CCWWGG	5 cut(s)	223, 970, 1050, 1105, 1123
Bst1107I	GTATAC	1 cut(s)	446
Bst2UI	CCWGG	2 cut(s)	389, 941
Bst4CI	ACNGT	4 cut(s)	50, 82, 529, 1012
Bst6I	CTCTTC	1 cut(s)	221
BstC8I	GCNNGC	1 cut(s)	553
BstDEI	CTNAG	3 cut(s)	199, 511, 992
BstF5I	GGATG	5 cut(s)	97, 384, 950, 954, 1059
BstHHI	GCGC	1 cut(s)	302
BstKTI	GATC	4 cut(s)	198, 397, 541, 954
BstMAI	GTCTC	1 cut(s)	875
BstMBI	GATC	4 cut(s)	195, 394, 538, 951
BstMWI	GCNNNNNNNGC	3 cut(s)	143, 149, 542
BstNI	CCWGG	2 cut(s)	389, 941
BstNSI	RCATGY	1 cut(s)	569
BstSCI	CCNGG	2 cut(s)	387, 939
BstSFI	CTRYAG	3 cut(s)	60, 480, 834
BstSLI	GKGCMC	2 cut(s)	334, 377
BstV1I	GCAGC	3 cut(s)	155, 518, 535
BstX2I	RGATCY	1 cut(s)	195
BstYI	RGATCY	1 cut(s)	195
BstZ17I	GTATAC	1 cut(s)	446
BsuI	GTATCC	2 cut(s)	541, 786
BtsCI	GGATG	5 cut(s)	97, 384, 950, 954, 1059
BtsIMutI	CAGTG	3 cut(s)	707, 1000, 1017
Cac8I	GCNNGC	1 cut(s)	553
CaiI	CAGNNNCTG	1 cut(s)	999
CciI	TCATGA	1 cut(s)	873
CfoI	GCGC	1 cut(s)	302
Cfr13I	GGNCC	1 cut(s)	1034
Csp6I	GTAC	2 cut(s)	228, 490
CspCI	CAANNNNNGTGG	2 cut(s)	412, 447
CviAII	CATG	8 cut(s)	42, 335, 566, 736, 771, 874, 955, 1020
CviJI	RGCY	8 cut(s)	257, 361, 436, 509, 519, 768, 1110, 1120
CviKI_1	RGCY	8 cut(s)	257, 361, 436, 509, 519, 768, 1110, 1120
CviQI	GTAC	2 cut(s)	228, 490
DdeI	CTNAG	3 cut(s)	199, 511, 992
DpnI	GATC	4 cut(s)	197, 396, 540, 953
DpnII	GATC	4 cut(s)	195, 394, 538, 951
Eam1104I	CTCTTC	1 cut(s)	221
EarI	CTCTTC	1 cut(s)	221
Eco130I	CCWWGG	5 cut(s)	223, 970, 1050, 1105, 1123
Eco32I	GATATC	1 cut(s)	819
Eco47I	GGWCC	1 cut(s)	1034
Eco88I	CYCGRG	1 cut(s)	1037
EcoO109I	RGGNCCY	1 cut(s)	1034
EcoRI	GAATTC	1 cut(s)	380
EcoRII	CCWGG	2 cut(s)	387, 939
EcoRV	GATATC	1 cut(s)	819
EcoT14I	CCWWGG	5 cut(s)	223, 970, 1050, 1105, 1123
EcoT22I	ATGCAT	1 cut(s)	571
ErhI	CCWWGG	5 cut(s)	223, 970, 1050, 1105, 1123
FaeI	CATG	8 cut(s)	45, 338, 569, 739, 774, 877, 958, 1023
FaqI	GGGAC	3 cut(s)	43, 280, 1047
FatI	CATG	8 cut(s)	41, 334, 565, 735, 770, 873, 954, 1019
FbaI	TGATCA	1 cut(s)	951
FblI	GTMKAC	1 cut(s)	445
Fnu4HI	GCNGC	4 cut(s)	144, 507, 546, 549
FokI	GGATG	5 cut(s)	84, 371, 957, 961, 1046
Fsp4HI	GCNGC	4 cut(s)	144, 507, 546, 549
FspBI	CTAG	3 cut(s)	26, 603, 971
FspI	TGCGCA	1 cut(s)	301
GlaI	GCGC	1 cut(s)	301
GluI	GCNGC	4 cut(s)	144, 507, 546, 549
GsuI	CTGGAG	2 cut(s)	291, 771
HapII	CCGG	1 cut(s)	89
HhaI	GCGC	1 cut(s)	302
Hin1II	CATG	8 cut(s)	45, 338, 569, 739, 774, 877, 958, 1023
Hin6I	GCGC	1 cut(s)	300
HinP1I	GCGC	1 cut(s)	300
HinfI	GANTC	4 cut(s)	31, 857, 868, 975
HpaII	CCGG	1 cut(s)	89
HphI	GGTGA	3 cut(s)	67, 368, 913
Hpy166II	GTNNAC	1 cut(s)	446
Hpy188I	TCNGA	2 cut(s)	514, 574
Hpy188III	TCNNGA	6 cut(s)	89, 560, 686, 822, 861, 874
Hpy8I	GTNNAC	1 cut(s)	446
HpyAV	CCTTC	5 cut(s)	111, 183, 335, 509, 575
HpyCH4III	ACNGT	4 cut(s)	50, 82, 529, 1012
HpyF10VI	GCNNNNNNNGC	3 cut(s)	143, 149, 542
HpyF3I	CTNAG	3 cut(s)	199, 511, 992
Hsp92II	CATG	8 cut(s)	45, 338, 569, 739, 774, 877, 958, 1023
HspAI	GCGC	1 cut(s)	300
KflI	GGGWCCC	1 cut(s)	1034
Kpn2I	TCCGGA	1 cut(s)	88
KpnI	GGTACC	1 cut(s)	231
Ksp22I	TGATCA	1 cut(s)	951
Kzo9I	GATC	4 cut(s)	195, 394, 538, 951
LmnI	GCTCC	1 cut(s)	1125
Lsp1109I	GCAGC	3 cut(s)	155, 518, 535
LweI	GCATC	2 cut(s)	578, 613
MaeI	CTAG	3 cut(s)	26, 603, 971
MaeIII	GTNAC	4 cut(s)	55, 206, 1006, 1025
MalI	GATC	4 cut(s)	197, 396, 540, 953
MbiI	CCGCTC	1 cut(s)	498
MboI	GATC	4 cut(s)	195, 394, 538, 951
MboII	GAAGA	3 cut(s)	208, 211, 715
MfeI	CAATTG	1 cut(s)	303
MflI	RGATCY	1 cut(s)	195
MhlI	GDGCHC	2 cut(s)	334, 377
MluCI	AATT	7 cut(s)	243, 276, 303, 380, 459, 636, 842
MlyI	GAGTC	2 cut(s)	25, 877
MnlI	CCTC	4 cut(s)	163, 186, 266, 520
Mph1103I	ATGCAT	1 cut(s)	571
MroI	TCCGGA	1 cut(s)	88
MseI	TTAA	1 cut(s)	1141
MslI	CAYNNNNRTG	3 cut(s)	621, 1064, 1091
MspA1I	CMGCKG	2 cut(s)	536, 548
MspI	CCGG	1 cut(s)	89
MspR9I	CCNGG	2 cut(s)	389, 941
MunI	CAATTG	1 cut(s)	303
Mva1269I	GAATGC	2 cut(s)	555, 911
MvaI	CCWGG	2 cut(s)	389, 941
MwoI	GCNNNNNNNGC	3 cut(s)	143, 149, 542
NdeII	GATC	4 cut(s)	195, 394, 538, 951
NlaIII	CATG	8 cut(s)	45, 338, 569, 739, 774, 877, 958, 1023
NlaIV	GGNNCC	5 cut(s)	229, 1017, 1035, 1036, 1121
NmuCI	GTSAC	2 cut(s)	55, 1006
NsbI	TGCGCA	1 cut(s)	301
NsiI	ATGCAT	1 cut(s)	571
NspI	RCATGY	1 cut(s)	569
PagI	TCATGA	1 cut(s)	873
PctI	GAATGC	2 cut(s)	555, 911
PfeI	GAWTC	2 cut(s)	857, 975
PkrI	GCNGC	4 cut(s)	145, 508, 547, 550
PleI	GAGTC	2 cut(s)	25, 876
PpsI	GAGTC	2 cut(s)	25, 876
PpuMI	RGGWCCY	1 cut(s)	1034
Psp5II	RGGWCCY	1 cut(s)	1034
Psp6I	CCWGG	2 cut(s)	387, 939
PspGI	CCWGG	2 cut(s)	387, 939
PspN4I	GGNNCC	5 cut(s)	229, 1017, 1035, 1036, 1121
PspPI	GGNCC	1 cut(s)	1034
PspPPI	RGGWCCY	1 cut(s)	1034
PstNI	CAGNNNCTG	1 cut(s)	999
PsuI	RGATCY	1 cut(s)	195
RsaI	GTAC	2 cut(s)	229, 491
RsaNI	GTAC	2 cut(s)	228, 490
RseI	CAYNNNNRTG	3 cut(s)	621, 1064, 1091
SaqAI	TTAA	1 cut(s)	1141
SatI	GCNGC	4 cut(s)	144, 507, 546, 549
Sau3AI	GATC	4 cut(s)	195, 394, 538, 951
Sau96I	GGNCC	1 cut(s)	1034
ScaI	AGTACT	1 cut(s)	491
SchI	GAGTC	2 cut(s)	25, 877
ScrFI	CCNGG	2 cut(s)	389, 941
SduI	GDGCHC	2 cut(s)	334, 377
SfaNI	GCATC	2 cut(s)	578, 613
SfcI	CTRYAG	3 cut(s)	60, 480, 834
SinI	GGWCC	1 cut(s)	1034
SmiMI	CAYNNNNRTG	3 cut(s)	621, 1064, 1091
Sse9I	AATT	7 cut(s)	243, 276, 303, 380, 459, 636, 842
SsiI	CCGC	5 cut(s)	496, 534, 546, 924, 1023
SspI	AATATT	1 cut(s)	156
SspMI	CTAG	3 cut(s)	26, 603, 971
StyD4I	CCNGG	2 cut(s)	387, 939
StyI	CCWWGG	5 cut(s)	223, 970, 1050, 1105, 1123
TaaI	ACNGT	4 cut(s)	50, 82, 529, 1012
TasI	AATT	7 cut(s)	243, 276, 303, 380, 459, 636, 842
TatI	WGTACW	1 cut(s)	489
TauI	GCSGC	1 cut(s)	548
TfiI	GAWTC	2 cut(s)	857, 975
Tru1I	TTAA	1 cut(s)	1141
Tru9I	TTAA	1 cut(s)	1141
TscAI	CASTG	3 cut(s)	714, 1000, 1017
TseFI	GTSAC	2 cut(s)	55, 1006
TseI	GCWGC	3 cut(s)	143, 506, 548
Tsp45I	GTSAC	2 cut(s)	55, 1006
TspDTI	ATGAA	3 cut(s)	373, 418, 724
TspRI	CASTG	3 cut(s)	714, 1000, 1017
VpaK11BI	GGWCC	1 cut(s)	1034
XapI	RAATTY	1 cut(s)	380
XceI	RCATGY	1 cut(s)	569
XcmI	CCANNNNNNNNNTGG	1 cut(s)	341
XmaJI	CCTAGG	1 cut(s)	970
XmiI	GTMKAC	1 cut(s)	445
XspI	CTAG	3 cut(s)	26, 603, 971
ZrmI	AGTACT	1 cut(s)	491
Zsp2I	ATGCAT	1 cut(s)	571

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.