Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0001163

Physical Location & Seq

Genomic Coordinates Forward (+)

4128428 .. 4130733

Gene Structure 2306 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031327

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1296 bp

ATGACTGAAGTTAATGGGATCAAGGCTCCAGAGAAGCTTGGACAAGTAGCCATGACTGGAGTTAATGGGATCAAGGCTCCAAAGAAGCTTGAGGGGCATTTTAAAGCTATGGCAATTTGTTGGCTCCTCGGACTAGGGTCCTTAGTCGCATGGAACAGTGTTCTGACTATAGGTGATTACTATGGAATATTGTTTCCGAAATACCATCCTTCGAGGGTTCTGACCCTCGTTTATCAACCATTTGCATTTATATCAATGGGAATACTAGCATACAAGGAAGCAACCGTTAATACCAGAAAGAGGATCTTAATTGGATACACTCTCTTCTTTCTTGGTACCTTGATGATGATAGTTGTGGATGTTGCTACATCTGGCAGAGGAGGAATTGGACCTTATATTGGTATATGTGCAATGGTTGGTGTATTTGGGGTTGCAGATGGTCATGTTCAAGGTGGAGTCATTGGTGATTTATCCTTGATGCGCCCTGAGTTCATCCAGTCCTTCTTTGCTGGCTTGGCTGCATCAGGTGCTCTAACCTCTGCCTTGAGGCTGATGACAAGGGCTGCCTTTGAGAAGTATCATGATGGTCTTCGCAAGGGAACAATGATGTTCTTGGCCCTTTCCACATTCATCGAGTTCCTGTGTATATTTCTGTATGCAACTTACTTCTCTAGGTTACCTATAGTAAAGTACTACCGCTCAAAGGCAGCCTCGGAAGGCTCCAAAACTGTTATGGCTGATCTTGCTGCCGGTGGCATTCAAACACAAGCAGACATAGAAGCAATTCCACAACGATTGACCACTAAGCAATTATTCATTCAGAATTATGATTATGCACTTGGCTTGTTTCTGATATATGCATTGACATTATCAATCTTCCCTGGTTTCCTTTTTGAAAACACTGGAAAACACCAATTGGGCACATGGTATCCCCTTGTTCTGATCGCAATGTACAACGTGTTGGATTTTATATCGAGATACACACCTCTTATACCATGCTTGAAGATTGAAAACAGAAAGGGCCTCATGGTTGCAATTGGGCTGCGTTTTCTCTTCGTTCCAGCGTTCTACTTCACTGCAAAATACGCTGACCAAGGTTGGATGATCCTGCTCACCTCAATCTTGGGTTTTACAAATGGTCATCTTACTGTTTGTCTCATGACAGTGGCACCAAAAGGTTACACGGGACCTGAGCAGAATGCTTTGGGCAATGTCCTTGCTTTCTGCCTTATGTGCGGCATATTTGCTGGGGTTTTACTCGATTGGTTATGGCTCATCGGCAACGGCAAATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005337 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0015858 GO:0015931 GO:0015932 GO:0016020 GO:0022857 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:1901264 GO:1901505 GO:1901642

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nucleoside_tran

Protein Analysis

432

Amino Acids

47.38

Weight (kDa)

9.26

Isoelectric Point (pI)

27.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nucleoside_tran	PF01733	137 - 424	1.9e-28	Nucleoside transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001163)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61630 AT4G05110 AT4G05110 AT4G05110 AT4G05120 AT4G05120 AT4G05130 AT4G05140
fragaria_vesca	FvH4_3g03740 FvH4_3g03740 FvH4_3g03740 FvH4_3g03740 FvH4_3g03750 FvH4_5g10501
malus_domestica	MD05G1326900.v1.1 MD10G1305000.v1.1
prunus_persica	Prupe.4G034600_v2.0.a1
pyrus_communis	pycom05g30120 pycom10g25750
rosa_chinensis	RchiOBHm_Chr5g0005801 RchiOBHm_Chr5g0005811 RchiOBHm_Chr5g0005821 RchiOBHm_Chr7g0187631
rosa_laevigata	RLG00000004764 RLG00000031327 RLG00000031328 RLG00000031329
rosa_multiflora	Rmu_sc0002694.1_g000001
rosa_roxburghii	Rroxscaffold_1G00070040 Rroxscaffold_1G00070050 Rroxscaffold_1G00070060 Rroxscaffold_3G00267210
rosa_rugosa	Rorug04G0418200 Rorug04G0418300 Rorug04G0418400 Rorug04G0418500 Rorug04G0418500 Rorug04G0418600 Rorug04G0418700 Rorug06G0483300
rosa_samantha	Rh5AG045700 Rh5AG045800 Rh5AG045900 Rh5BG044400 Rh5BG044600 Rh5CG053200 Rh5CG053400 Rh5CG053500 Rh5DG044300 Rh7AG088200 Rh7BG089500 Rh7CG088800 Rh7DG090500
rosa_wichuraiana	Rw0G002660 Rw5G004600 Rw5G004610 Rw5G004620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	335
AccB1I	GGYRCC	2 cut(s)	335, 1168
AccBSI	CCGCTC	1 cut(s)	699
AciI	CCGC	2 cut(s)	697, 1236
AclWI	GGATC	4 cut(s)	26, 77, 311, 1099
AcsI	RAATTY	1 cut(s)	1289
AcuI	CTGAAG	1 cut(s)	27
AfaI	GTAC	3 cut(s)	337, 692, 953
AfiI	CCNNNNNNNGG	3 cut(s)	300, 398, 703
AflIII	ACRYGT	1 cut(s)	957
AgsI	TTSAA	5 cut(s)	449, 761, 896, 1003, 1010
AjnI	CCWGG	1 cut(s)	880
AluBI	AGCT	3 cut(s)	37, 88, 107
AluI	AGCT	3 cut(s)	37, 88, 107
Alw21I	GWGCWC	1 cut(s)	532
Alw26I	GTCTC	1 cut(s)	1160
AlwI	GGATC	4 cut(s)	26, 77, 311, 1099
AoxI	GGCC	2 cut(s)	615, 1021
ApeKI	GCWGC	5 cut(s)	518, 563, 707, 746, 1042
ApoI	RAATTY	1 cut(s)	1289
Asp700I	GAANNNNTTC	1 cut(s)	783
Asp718I	GGTACC	1 cut(s)	335
AspLEI	GCGC	1 cut(s)	483
AspS9I	GGNCC	5 cut(s)	138, 389, 616, 1021, 1187
AsuHPI	GGTGA	3 cut(s)	185, 476, 1105
AvaII	GGWCC	3 cut(s)	138, 389, 1187
BaeGI	GKGCMC	1 cut(s)	923
BanI	GGYRCC	2 cut(s)	335, 1168
BbsI	GAAGAC	1 cut(s)	581
Bbv12I	GWGCWC	1 cut(s)	532
BbvI	GCAGC	5 cut(s)	505, 550, 719, 733, 1029
BccI	CCATC	3 cut(s)	213, 431, 578
BciT130I	CCWGG	1 cut(s)	882
BciVI	GTATCC	2 cut(s)	308, 939
BcoDI	GTCTC	1 cut(s)	1160
BfaI	CTAG	3 cut(s)	134, 266, 672
BfmI	CTRYAG	2 cut(s)	168, 681
BfuI	GTATCC	2 cut(s)	308, 939
BisI	GCNGC	6 cut(s)	519, 564, 708, 747, 1043, 1237
BlsI	GCNGC	6 cut(s)	520, 565, 709, 748, 1044, 1238
BmcAI	AGTACT	1 cut(s)	692
Bme1390I	CCNGG	1 cut(s)	882
Bme18I	GGWCC	3 cut(s)	138, 389, 1187
BmgT120I	GGNCC	5 cut(s)	138, 389, 616, 1021, 1187
BmiI	GGNNCC	8 cut(s)	27, 78, 125, 139, 337, 721, 1170, 1188
BmrFI	CCNGG	1 cut(s)	882
BmsI	GCATC	2 cut(s)	468, 530
BoxI	GACNNNNGTC	1 cut(s)	136
BpiI	GAAGAC	1 cut(s)	581
BpmI	CTGGAG	2 cut(s)	12, 78
Bpu10I	CCTNAGC	1 cut(s)	1191
BpuEI	CTTGAG	2 cut(s)	110, 565
BsaJI	CCNNGG	4 cut(s)	127, 711, 880, 1093
Bsc4I	CCNNNNNNNGG	3 cut(s)	300, 398, 703
Bse118I	RCCGGY	1 cut(s)	749
Bse1I	ACTGG	3 cut(s)	61, 496, 907
Bse3DI	GCAATG	3 cut(s)	417, 954, 1216
BseBI	CCWGG	1 cut(s)	882
BseDI	CCNNGG	4 cut(s)	127, 711, 880, 1093
BseGI	GGATG	4 cut(s)	205, 364, 492, 1107
BseLI	CCNNNNNNNGG	3 cut(s)	300, 398, 703
BseMI	GCAATG	3 cut(s)	417, 954, 1216
BseMII	CTCAG	2 cut(s)	477, 1182
BseNI	ACTGG	3 cut(s)	61, 496, 907
BseRI	GAGGAG	2 cut(s)	116, 393
BseSI	GKGCMC	1 cut(s)	923
BseXI	GCAGC	5 cut(s)	505, 550, 719, 733, 1029
BseYI	CCCAGC	1 cut(s)	1247
BshFI	GGCC	2 cut(s)	617, 1023
BshNI	GGYRCC	2 cut(s)	335, 1168
BsiHKAI	GWGCWC	1 cut(s)	532
BsiSI	CCGG	1 cut(s)	750
BslFI	GGGAC	1 cut(s)	1200
BslI	CCNNNNNNNGG	3 cut(s)	300, 398, 703
BsmAI	GTCTC	1 cut(s)	1160
BsmFI	GGGAC	1 cut(s)	1200
BsmI	GAATGC	2 cut(s)	756, 1204
BsnI	GGCC	2 cut(s)	617, 1023
Bsp1286I	GDGCHC	2 cut(s)	532, 923
Bsp1407I	TGTACA	1 cut(s)	951
Bsp143I	GATC	6 cut(s)	18, 69, 303, 739, 942, 1104
BspACI	CCGC	2 cut(s)	697, 1236
BspANI	GGCC	2 cut(s)	617, 1023
BspCNI	CTCAG	2 cut(s)	478, 1183
BspHI	TCATGA	2 cut(s)	580, 1158
BspLI	GGNNCC	8 cut(s)	27, 78, 125, 139, 337, 721, 1170, 1188
BspPI	GGATC	4 cut(s)	26, 77, 311, 1099
BspT107I	GGYRCC	2 cut(s)	335, 1168
BsrBI	CCGCTC	1 cut(s)	699
BsrDI	GCAATG	3 cut(s)	417, 954, 1216
BsrFI	RCCGGY	1 cut(s)	749
BsrGI	TGTACA	1 cut(s)	951
BsrI	ACTGG	3 cut(s)	61, 496, 907
BssAI	RCCGGY	1 cut(s)	749
BssECI	CCNNGG	4 cut(s)	127, 711, 880, 1093
BssMI	GATC	6 cut(s)	18, 69, 303, 739, 942, 1104
BssT1I	CCWWGG	1 cut(s)	1093
Bst2UI	CCWGG	1 cut(s)	882
Bst4CI	ACNGT	5 cut(s)	158, 286, 730, 1150, 1165
Bst6I	CTCTTC	2 cut(s)	329, 1058
BstAPI	GCANNNNNTGC	1 cut(s)	527
BstAUI	TGTACA	1 cut(s)	951
BstC8I	GCNNGC	1 cut(s)	511
BstDEI	CTNAG	4 cut(s)	142, 486, 804, 1191
BstEII	GGTNACC	1 cut(s)	675
BstF5I	GGATG	4 cut(s)	205, 364, 492, 1107
BstHHI	GCGC	1 cut(s)	483
BstKTI	GATC	6 cut(s)	21, 72, 306, 742, 945, 1107
BstMAI	GTCTC	1 cut(s)	1160
BstMBI	GATC	6 cut(s)	18, 69, 303, 739, 942, 1104
BstMWI	GCNNNNNNNGC	6 cut(s)	94, 515, 527, 743, 1085, 1233
BstNI	CCWGG	1 cut(s)	882
BstPAI	GACNNNNGTC	1 cut(s)	136
BstPI	GGTNACC	1 cut(s)	675
BstSCI	CCNGG	1 cut(s)	880
BstSFI	CTRYAG	2 cut(s)	168, 681
BstSLI	GKGCMC	1 cut(s)	923
BstV1I	GCAGC	5 cut(s)	505, 550, 719, 733, 1029
BstV2I	GAAGAC	1 cut(s)	581
BstX2I	RGATCY	1 cut(s)	303
BstYI	RGATCY	1 cut(s)	303
BsuI	GTATCC	2 cut(s)	308, 939
BsuRI	GGCC	2 cut(s)	617, 1023
BtsCI	GGATG	4 cut(s)	205, 364, 492, 1107
BtsI	GCAGTG	1 cut(s)	1074
BtsIMutI	CAGTG	4 cut(s)	163, 900, 1074, 1170
Cac8I	GCNNGC	1 cut(s)	511
CciI	TCATGA	2 cut(s)	580, 1158
CfoI	GCGC	1 cut(s)	483
Cfr10I	RCCGGY	1 cut(s)	749
Cfr13I	GGNCC	5 cut(s)	138, 389, 616, 1021, 1187
Csp6I	GTAC	3 cut(s)	336, 691, 952
CspCI	CAANNNNNGTGG	2 cut(s)	777, 812
CviAII	CATG	8 cut(s)	52, 150, 443, 581, 924, 996, 1027, 1159
CviQI	GTAC	3 cut(s)	336, 691, 952
DdeI	CTNAG	4 cut(s)	142, 486, 804, 1191
DpnI	GATC	6 cut(s)	20, 71, 305, 741, 944, 1106
DpnII	GATC	6 cut(s)	18, 69, 303, 739, 942, 1104
DraI	TTTAAA	1 cut(s)	103
Eam1104I	CTCTTC	2 cut(s)	329, 1058
EarI	CTCTTC	2 cut(s)	329, 1058
Eco130I	CCWWGG	1 cut(s)	1093
Eco47I	GGWCC	3 cut(s)	138, 389, 1187
Eco57I	CTGAAG	1 cut(s)	27
Eco91I	GGTNACC	1 cut(s)	675
EcoO109I	RGGNCCY	3 cut(s)	138, 1021, 1187
EcoO65I	GGTNACC	1 cut(s)	675
EcoRII	CCWGG	1 cut(s)	880
EcoT14I	CCWWGG	1 cut(s)	1093
EcoT22I	ATGCAT	1 cut(s)	862
ErhI	CCWWGG	1 cut(s)	1093
FaeI	CATG	8 cut(s)	55, 153, 446, 584, 927, 999, 1030, 1162
FalI	AAGNNNNNCTT	2 cut(s)	290, 322
FaqI	GGGAC	1 cut(s)	1200
FatI	CATG	8 cut(s)	51, 149, 442, 580, 923, 995, 1026, 1158
Fnu4HI	GCNGC	6 cut(s)	519, 564, 708, 747, 1043, 1237
FokI	GGATG	4 cut(s)	192, 371, 479, 1114
Fsp4HI	GCNGC	6 cut(s)	519, 564, 708, 747, 1043, 1237
FspBI	CTAG	3 cut(s)	134, 266, 672
GlaI	GCGC	1 cut(s)	482
GluI	GCNGC	6 cut(s)	519, 564, 708, 747, 1043, 1237
GsaI	CCCAGC	1 cut(s)	1251
GsuI	CTGGAG	2 cut(s)	12, 78
HaeIII	GGCC	2 cut(s)	617, 1023
HapII	CCGG	1 cut(s)	750
HhaI	GCGC	1 cut(s)	483
Hin1II	CATG	8 cut(s)	55, 153, 446, 584, 927, 999, 1030, 1162
Hin6I	GCGC	1 cut(s)	481
HinP1I	GCGC	1 cut(s)	481
HindIII	AAGCTT	2 cut(s)	35, 86
HinfI	GANTC	1 cut(s)	456
HpaII	CCGG	1 cut(s)	750
HphI	GGTGA	3 cut(s)	185, 476, 1105
Hpy188I	TCNGA	8 cut(s)	131, 165, 198, 222, 715, 822, 852, 942
Hpy188III	TCNNGA	4 cut(s)	29, 581, 975, 1159
HpyAV	CCTTC	3 cut(s)	219, 511, 710
HpyCH4III	ACNGT	5 cut(s)	158, 286, 730, 1150, 1165
HpyCH4IV	ACGT	1 cut(s)	957
HpyCH4V	TGCA	9 cut(s)	245, 410, 434, 521, 659, 836, 860, 1034, 1079
HpyF10VI	GCNNNNNNNGC	6 cut(s)	94, 515, 527, 743, 1085, 1233
HpyF3I	CTNAG	4 cut(s)	142, 486, 804, 1191
HpySE526I	ACGT	1 cut(s)	957
Hsp92II	CATG	8 cut(s)	55, 153, 446, 584, 927, 999, 1030, 1162
HspAI	GCGC	1 cut(s)	481
KpnI	GGTACC	1 cut(s)	339
Kzo9I	GATC	6 cut(s)	18, 69, 303, 739, 942, 1104
LmnI	GCTCC	4 cut(s)	31, 82, 129, 725
Lsp1109I	GCAGC	5 cut(s)	505, 550, 719, 733, 1029
LweI	GCATC	2 cut(s)	468, 530
MaeI	CTAG	3 cut(s)	134, 266, 672
MaeII	ACGT	1 cut(s)	957
MaeIII	GTNAC	2 cut(s)	675, 1178
MalI	GATC	6 cut(s)	20, 71, 305, 741, 944, 1106
MbiI	CCGCTC	1 cut(s)	699
MboI	GATC	6 cut(s)	18, 69, 303, 739, 942, 1104
MboII	GAAGA	5 cut(s)	316, 581, 868, 1015, 1045
MfeI	CAATTG	2 cut(s)	914, 1035
MflI	RGATCY	1 cut(s)	303
MhlI	GDGCHC	2 cut(s)	532, 923
MluCI	AATT	9 cut(s)	114, 309, 384, 783, 809, 823, 914, 1035, 1289
MlyI	GAGTC	1 cut(s)	465
MmeI	TCCRAC	2 cut(s)	942, 1079
Mph1103I	ATGCAT	1 cut(s)	862
MroXI	GAANNNNTTC	1 cut(s)	783
MseI	TTAA	6 cut(s)	12, 63, 102, 288, 308, 1294
MslI	CAYNNNNRTG	1 cut(s)	1163
MspI	CCGG	1 cut(s)	750
MspR9I	CCNGG	1 cut(s)	882
MunI	CAATTG	2 cut(s)	914, 1035
Mva1269I	GAATGC	2 cut(s)	756, 1204
MvaI	CCWGG	1 cut(s)	882
MwoI	GCNNNNNNNGC	6 cut(s)	94, 515, 527, 743, 1085, 1233
NdeII	GATC	6 cut(s)	18, 69, 303, 739, 942, 1104
NlaIII	CATG	8 cut(s)	55, 153, 446, 584, 927, 999, 1030, 1162
NlaIV	GGNNCC	8 cut(s)	27, 78, 125, 139, 337, 721, 1170, 1188
NsiI	ATGCAT	1 cut(s)	862
PagI	TCATGA	2 cut(s)	580, 1158
PctI	GAATGC	2 cut(s)	756, 1204
PdmI	GAANNNNTTC	1 cut(s)	783
PkrI	GCNGC	6 cut(s)	520, 565, 709, 748, 1044, 1238
PleI	GAGTC	1 cut(s)	464
PpsI	GAGTC	1 cut(s)	464
PpuMI	RGGWCCY	2 cut(s)	138, 1187
PshAI	GACNNNNGTC	1 cut(s)	136
Psp5II	RGGWCCY	2 cut(s)	138, 1187
Psp6I	CCWGG	1 cut(s)	880
PspEI	GGTNACC	1 cut(s)	675
PspFI	CCCAGC	1 cut(s)	1247
PspGI	CCWGG	1 cut(s)	880
PspN4I	GGNNCC	8 cut(s)	27, 78, 125, 139, 337, 721, 1170, 1188
PspPI	GGNCC	5 cut(s)	138, 389, 616, 1021, 1187
PspPPI	RGGWCCY	2 cut(s)	138, 1187
PsuI	RGATCY	1 cut(s)	303
RsaI	GTAC	3 cut(s)	337, 692, 953
RsaNI	GTAC	3 cut(s)	336, 691, 952
RseI	CAYNNNNRTG	1 cut(s)	1163
SaqAI	TTAA	6 cut(s)	12, 63, 102, 288, 308, 1294
SatI	GCNGC	6 cut(s)	519, 564, 708, 747, 1043, 1237
Sau3AI	GATC	6 cut(s)	18, 69, 303, 739, 942, 1104
Sau96I	GGNCC	5 cut(s)	138, 389, 616, 1021, 1187
ScaI	AGTACT	1 cut(s)	692
SchI	GAGTC	1 cut(s)	465
ScrFI	CCNGG	1 cut(s)	882
SduI	GDGCHC	2 cut(s)	532, 923
SfaNI	GCATC	2 cut(s)	468, 530
SfcI	CTRYAG	2 cut(s)	168, 681
SinI	GGWCC	3 cut(s)	138, 389, 1187
SmiMI	CAYNNNNRTG	1 cut(s)	1163
SmlI	CTYRAG	2 cut(s)	89, 544
SmoI	CTYRAG	2 cut(s)	89, 544
Sse9I	AATT	9 cut(s)	114, 309, 384, 783, 809, 823, 914, 1035, 1289
SsiI	CCGC	2 cut(s)	697, 1236
SspI	AATATT	1 cut(s)	189
SspMI	CTAG	3 cut(s)	134, 266, 672
StyD4I	CCNGG	1 cut(s)	880
StyI	CCWWGG	1 cut(s)	1093
TaaI	ACNGT	5 cut(s)	158, 286, 730, 1150, 1165
TaiI	ACGT	1 cut(s)	960
TaqI	TCGA	4 cut(s)	212, 633, 974, 1260
TasI	AATT	9 cut(s)	114, 309, 384, 783, 809, 823, 914, 1035, 1289
TatI	WGTACW	2 cut(s)	690, 951
TauI	GCSGC	1 cut(s)	1239
Tru1I	TTAA	6 cut(s)	12, 63, 102, 288, 308, 1294
Tru9I	TTAA	6 cut(s)	12, 63, 102, 288, 308, 1294
TscAI	CASTG	4 cut(s)	163, 907, 1081, 1170
TseI	GCWGC	5 cut(s)	518, 563, 707, 746, 1042
TspDTI	ATGAA	3 cut(s)	481, 619, 805
TspRI	CASTG	4 cut(s)	163, 907, 1081, 1170
VpaK11BI	GGWCC	3 cut(s)	138, 389, 1187
XapI	RAATTY	1 cut(s)	1289
XcmI	CCANNNNNNNNNTGG	1 cut(s)	730
XmnI	GAANNNNTTC	1 cut(s)	783
XspI	CTAG	3 cut(s)	134, 266, 672
ZrmI	AGTACT	1 cut(s)	692
Zsp2I	ATGCAT	1 cut(s)	862

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.