Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0001163

Physical Location & Seq

Genomic Coordinates Forward (+)

57922336 .. 57923139

Gene Structure 804 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0418300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGGGTGAATCTCAGGTGGTCTGCCCTTGGGCTTTCTTAGGCCCTTTGTCTGACAAGGAGTCTGAATGCATTGCTCCTGCACCAAAACCTCAAAAGCCAAAAACCTTTGCGTCAATTGTTGCAGGGTGTGATGAAACTCATATTCCAATTAATACGCTTGCTGCACCGACCATCCGTGGAGAAACAGTGTACGTCAAGATTAATGAGCAGATTTATCAAGAGCAGTTGAGGGCTTGCCGTACTAATCTCATTGGTTGTCTTCTTTTGCGTAAGGGATCACCACCGATGAAGACTGAAACTTTAAAGCTTTCTTTACAATCGCTTTGGCAGCCAGTAGGACCATGGCGTTTGGTCCCCATCGGCAAAGGGTACTTCGACATTTATTTCAACTCTGAGGTTGATATGCACAAGGCATGGGGCGGTGGGACATGTACACTTGAGTCGGGGATATGTCACAGTGGAAACCAGATTTCAAGCCAGGGGAGGTTCTCCCTCAAACTCATGCACAAATCTGGATTCGTATCTCGGCGACGAAGGAGCAGCGTTTTGGGTACTATGCAAGGGTTTTGGTGGATGTCGATCTTTTGGGTACCCTCCCAAATTCCATTACGGTGGAAAGAGAAAACCATTGCTTCCCTGTTGGTATTGAGTATGAAAACCTTCCTCCACAATGCAATCATTGTGGCCTCATCGGTCATGAGCGACGGGTTTGCCGACAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005337 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0015858 GO:0015931 GO:0015932 GO:0016020 GO:0022857 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:1901264 GO:1901505 GO:1901642

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nucleoside_tran

Protein Analysis

240

Amino Acids

26.72

Weight (kDa)

9.32

Isoelectric Point (pI)

63.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001163)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61630 AT4G05110 AT4G05110 AT4G05110 AT4G05120 AT4G05120 AT4G05130 AT4G05140
fragaria_vesca	FvH4_3g03740 FvH4_3g03740 FvH4_3g03740 FvH4_3g03740 FvH4_3g03750 FvH4_5g10501
malus_domestica	MD05G1326900.v1.1 MD10G1305000.v1.1
prunus_persica	Prupe.4G034600_v2.0.a1
pyrus_communis	pycom05g30120 pycom10g25750
rosa_chinensis	RchiOBHm_Chr5g0005801 RchiOBHm_Chr5g0005811 RchiOBHm_Chr5g0005821 RchiOBHm_Chr7g0187631
rosa_laevigata	RLG00000004764 RLG00000031327 RLG00000031328 RLG00000031329
rosa_multiflora	Rmu_sc0002694.1_g000001
rosa_roxburghii	Rroxscaffold_1G00070040 Rroxscaffold_1G00070050 Rroxscaffold_1G00070060 Rroxscaffold_3G00267210
rosa_rugosa	Rorug04G0418200 Rorug04G0418300 Rorug04G0418400 Rorug04G0418500 Rorug04G0418500 Rorug04G0418600 Rorug04G0418700 Rorug06G0483300
rosa_samantha	Rh5AG045700 Rh5AG045800 Rh5AG045900 Rh5BG044400 Rh5BG044600 Rh5CG053200 Rh5CG053400 Rh5CG053500 Rh5DG044300 Rh7AG088200 Rh7BG089500 Rh7CG088800 Rh7DG090500
rosa_wichuraiana	Rw0G002660 Rw5G004600 Rw5G004610 Rw5G004620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	589
AccB1I	GGYRCC	1 cut(s)	589
AciI	CCGC	1 cut(s)	420
AclWI	GGATC	1 cut(s)	283
AcsI	RAATTY	1 cut(s)	600
AfaI	GTAC	6 cut(s)	191, 241, 371, 433, 553, 591
AflIII	ACRYGT	1 cut(s)	428
AgsI	TTSAA	2 cut(s)	388, 474
AhdI	GACNNNNNGTC	1 cut(s)	58
AjnI	CCWGG	1 cut(s)	477
AluBI	AGCT	1 cut(s)	307
AluI	AGCT	1 cut(s)	307
AlwI	GGATC	1 cut(s)	283
AoxI	GGCC	2 cut(s)	40, 684
ApeKI	GCWGC	3 cut(s)	161, 328, 540
ApoI	RAATTY	1 cut(s)	600
AseI	ATTAAT	2 cut(s)	150, 201
Asp700I	GAANNNNTTC	1 cut(s)	659
Asp718I	GGTACC	1 cut(s)	589
AspS9I	GGNCC	3 cut(s)	41, 338, 352
AsuHPI	GGTGA	2 cut(s)	17, 270
AvaII	GGWCC	2 cut(s)	338, 352
BanI	GGYRCC	1 cut(s)	589
BbsI	GAAGAC	2 cut(s)	251, 296
BbvI	GCAGC	3 cut(s)	148, 340, 552
BccI	CCATC	2 cut(s)	179, 365
BceAI	ACGGC	1 cut(s)	222
BcgI	CGANNNNNNTGC	1 cut(s)	692
BciT130I	CCWGG	1 cut(s)	479
BisI	GCNGC	3 cut(s)	162, 329, 541
BlsI	GCNGC	3 cut(s)	163, 330, 542
Bme1390I	CCNGG	1 cut(s)	479
Bme18I	GGWCC	2 cut(s)	338, 352
BmeRI	GACNNNNNGTC	1 cut(s)	58
BmgT120I	GGNCC	3 cut(s)	41, 338, 352
BmiI	GGNNCC	2 cut(s)	354, 591
BmrFI	CCNGG	1 cut(s)	479
BpiI	GAAGAC	2 cut(s)	251, 296
BpuEI	CTTGAG	1 cut(s)	458
BsaBI	GATNNNNATC	2 cut(s)	520, 578
BsaJI	CCNNGG	4 cut(s)	26, 175, 341, 478
BsaXI	ACNNNNNCTCC	2 cut(s)	171, 201
Bse1I	ACTGG	1 cut(s)	332
Bse3DI	GCAATG	2 cut(s)	69, 627
Bse8I	GATNNNNATC	2 cut(s)	520, 578
BseBI	CCWGG	1 cut(s)	479
BseDI	CCNNGG	4 cut(s)	26, 175, 341, 478
BseGI	GGATG	2 cut(s)	171, 579
BseJI	GATNNNNATC	2 cut(s)	520, 578
BseMI	GCAATG	2 cut(s)	69, 627
BseMII	CTCAG	2 cut(s)	26, 384
BseNI	ACTGG	1 cut(s)	332
BseXI	GCAGC	3 cut(s)	148, 340, 552
BsgI	GTGCAG	2 cut(s)	63, 147
BshFI	GGCC	2 cut(s)	42, 686
BshNI	GGYRCC	1 cut(s)	589
BslFI	GGGAC	2 cut(s)	338, 439
BsmFI	GGGAC	2 cut(s)	338, 439
BsmI	GAATGC	1 cut(s)	71
BsnI	GGCC	2 cut(s)	42, 686
Bsp1407I	TGTACA	1 cut(s)	431
Bsp143I	GATC	2 cut(s)	275, 579
Bsp19I	CCATGG	1 cut(s)	341
BspACI	CCGC	1 cut(s)	420
BspANI	GGCC	2 cut(s)	42, 686
BspCNI	CTCAG	2 cut(s)	25, 385
BspHI	TCATGA	1 cut(s)	696
BspLI	GGNNCC	2 cut(s)	354, 591
BspPI	GGATC	1 cut(s)	283
BspT107I	GGYRCC	1 cut(s)	589
BsrDI	GCAATG	2 cut(s)	69, 627
BsrGI	TGTACA	1 cut(s)	431
BsrI	ACTGG	1 cut(s)	332
BssECI	CCNNGG	4 cut(s)	26, 175, 341, 478
BssMI	GATC	2 cut(s)	275, 579
BssT1I	CCWWGG	2 cut(s)	26, 341
Bst2UI	CCWGG	1 cut(s)	479
Bst4CI	ACNGT	3 cut(s)	187, 458, 612
BstAUI	TGTACA	1 cut(s)	431
BstC8I	GCNNGC	2 cut(s)	159, 235
BstDEI	CTNAG	3 cut(s)	12, 37, 393
BstDSI	CCRYGG	2 cut(s)	175, 341
BstF5I	GGATG	2 cut(s)	171, 579
BstKTI	GATC	2 cut(s)	278, 582
BstMBI	GATC	2 cut(s)	275, 579
BstMWI	GCNNNNNNNGC	1 cut(s)	328
BstNI	CCWGG	1 cut(s)	479
BstNSI	RCATGY	1 cut(s)	432
BstSCI	CCNGG	1 cut(s)	477
BstV1I	GCAGC	3 cut(s)	148, 340, 552
BstV2I	GAAGAC	2 cut(s)	251, 296
BstXI	CCANNNNNNTGG	1 cut(s)	612
BsuRI	GGCC	2 cut(s)	42, 686
BtgI	CCRYGG	2 cut(s)	175, 341
BtsCI	GGATG	2 cut(s)	171, 579
BtsIMutI	CAGTG	2 cut(s)	192, 463
Cac8I	GCNNGC	2 cut(s)	159, 235
CciI	TCATGA	1 cut(s)	696
Cfr13I	GGNCC	3 cut(s)	41, 338, 352
CseI	GACGC	1 cut(s)	99
Csp6I	GTAC	6 cut(s)	190, 240, 370, 432, 552, 590
CspCI	CAANNNNNGTGG	2 cut(s)	663, 698
CviAII	CATG	5 cut(s)	342, 414, 429, 502, 697
CviJI	RGCY	8 cut(s)	32, 42, 97, 233, 307, 331, 477, 686
CviKI_1	RGCY	8 cut(s)	32, 42, 97, 233, 307, 331, 477, 686
CviQI	GTAC	6 cut(s)	190, 240, 370, 432, 552, 590
DdeI	CTNAG	3 cut(s)	12, 37, 393
DpnI	GATC	2 cut(s)	277, 581
DpnII	GATC	2 cut(s)	275, 579
DraI	TTTAAA	1 cut(s)	303
DriI	GACNNNNNGTC	1 cut(s)	58
Eam1105I	GACNNNNNGTC	1 cut(s)	58
Eco130I	CCWWGG	2 cut(s)	26, 341
Eco47I	GGWCC	2 cut(s)	338, 352
EcoO109I	RGGNCCY	1 cut(s)	41
EcoRII	CCWGG	1 cut(s)	477
EcoT14I	CCWWGG	2 cut(s)	26, 341
EcoT22I	ATGCAT	1 cut(s)	71
ErhI	CCWWGG	2 cut(s)	26, 341
FaeI	CATG	5 cut(s)	345, 417, 432, 505, 700
FaqI	GGGAC	2 cut(s)	338, 439
FatI	CATG	5 cut(s)	341, 413, 428, 501, 696
Fnu4HI	GCNGC	3 cut(s)	162, 329, 541
FokI	GGATG	2 cut(s)	158, 586
Fsp4HI	GCNGC	3 cut(s)	162, 329, 541
GluI	GCNGC	3 cut(s)	162, 329, 541
HaeIII	GGCC	2 cut(s)	42, 686
HgaI	GACGC	1 cut(s)	99
Hin1II	CATG	5 cut(s)	345, 417, 432, 505, 700
HindIII	AAGCTT	1 cut(s)	305
HinfI	GANTC	4 cut(s)	8, 59, 440, 516
HphI	GGTGA	2 cut(s)	17, 270
Hpy166II	GTNNAC	2 cut(s)	190, 434
Hpy188I	TCNGA	3 cut(s)	52, 64, 394
Hpy188III	TCNNGA	4 cut(s)	196, 218, 513, 697
Hpy8I	GTNNAC	2 cut(s)	190, 434
Hpy99I	CGWCG	2 cut(s)	534, 707
HpyAV	CCTTC	2 cut(s)	528, 670
HpyCH4III	ACNGT	3 cut(s)	187, 458, 612
HpyCH4IV	ACGT	1 cut(s)	192
HpyCH4V	TGCA	8 cut(s)	69, 80, 122, 164, 406, 505, 559, 674
HpyF10VI	GCNNNNNNNGC	1 cut(s)	328
HpyF3I	CTNAG	3 cut(s)	12, 37, 393
HpySE526I	ACGT	1 cut(s)	192
Hsp92II	CATG	5 cut(s)	345, 417, 432, 505, 700
KpnI	GGTACC	1 cut(s)	593
Kzo9I	GATC	2 cut(s)	275, 579
LmnI	GCTCC	2 cut(s)	79, 537
LpnPI	CCDG	8 cut(s)	90, 108, 345, 464, 479, 491, 498, 650
Lsp1109I	GCAGC	3 cut(s)	148, 340, 552
MaeII	ACGT	1 cut(s)	192
MaeIII	GTNAC	1 cut(s)	452
MalI	GATC	2 cut(s)	277, 581
MboI	GATC	2 cut(s)	275, 579
MboII	GAAGA	2 cut(s)	251, 301
MfeI	CAATTG	2 cut(s)	114, 718
MluCI	AATT	4 cut(s)	114, 147, 600, 718
MlyI	GAGTC	2 cut(s)	68, 449
MnlI	CCTC	8 cut(s)	99, 222, 388, 477, 503, 604, 674, 697
Mph1103I	ATGCAT	1 cut(s)	71
MroXI	GAANNNNTTC	1 cut(s)	659
MseI	TTAA	3 cut(s)	150, 201, 302
MslI	CAYNNNNRTG	1 cut(s)	610
MspR9I	CCNGG	1 cut(s)	479
MunI	CAATTG	2 cut(s)	114, 718
Mva1269I	GAATGC	1 cut(s)	71
MvaI	CCWGG	1 cut(s)	479
MwoI	GCNNNNNNNGC	1 cut(s)	328
NcoI	CCATGG	1 cut(s)	341
NdeII	GATC	2 cut(s)	275, 579
NlaIII	CATG	5 cut(s)	345, 417, 432, 505, 700
NlaIV	GGNNCC	2 cut(s)	354, 591
NmeAIII	GCCGAG	1 cut(s)	505
NmuCI	GTSAC	1 cut(s)	452
NsiI	ATGCAT	1 cut(s)	71
NspI	RCATGY	1 cut(s)	432
PagI	TCATGA	1 cut(s)	696
PciI	ACATGT	1 cut(s)	428
PcsI	WCGNNNNNNNCGW	1 cut(s)	711
PctI	GAATGC	1 cut(s)	71
PdmI	GAANNNNTTC	1 cut(s)	659
PfeI	GAWTC	2 cut(s)	8, 516
PkrI	GCNGC	3 cut(s)	163, 330, 542
PleI	GAGTC	2 cut(s)	67, 448
PpsI	GAGTC	2 cut(s)	67, 448
PscI	ACATGT	1 cut(s)	428
PshBI	ATTAAT	2 cut(s)	150, 201
Psp6I	CCWGG	1 cut(s)	477
PspGI	CCWGG	1 cut(s)	477
PspN4I	GGNNCC	2 cut(s)	354, 591
PspPI	GGNCC	3 cut(s)	41, 338, 352
RsaI	GTAC	6 cut(s)	191, 241, 371, 433, 553, 591
RsaNI	GTAC	6 cut(s)	190, 240, 370, 432, 552, 590
RseI	CAYNNNNRTG	1 cut(s)	610
SaqAI	TTAA	3 cut(s)	150, 201, 302
SatI	GCNGC	3 cut(s)	162, 329, 541
Sau3AI	GATC	2 cut(s)	275, 579
Sau96I	GGNCC	3 cut(s)	41, 338, 352
SchI	GAGTC	2 cut(s)	68, 449
ScrFI	CCNGG	1 cut(s)	479
SetI	ASST	8 cut(s)	18, 91, 107, 195, 309, 399, 488, 662
SinI	GGWCC	2 cut(s)	338, 352
SmiMI	CAYNNNNRTG	1 cut(s)	610
SmlI	CTYRAG	1 cut(s)	437
SmoI	CTYRAG	1 cut(s)	437
Sse9I	AATT	4 cut(s)	114, 147, 600, 718
SsiI	CCGC	1 cut(s)	420
StyD4I	CCNGG	1 cut(s)	477
StyI	CCWWGG	2 cut(s)	26, 341
TaaI	ACNGT	3 cut(s)	187, 458, 612
TaiI	ACGT	1 cut(s)	195
TaqI	TCGA	2 cut(s)	375, 578
TaqII	GACCGA	1 cut(s)	682
TasI	AATT	4 cut(s)	114, 147, 600, 718
TatI	WGTACW	1 cut(s)	431
TfiI	GAWTC	2 cut(s)	8, 516
Tru1I	TTAA	3 cut(s)	150, 201, 302
Tru9I	TTAA	3 cut(s)	150, 201, 302
TscAI	CASTG	2 cut(s)	192, 463
TseFI	GTSAC	1 cut(s)	452
TseI	GCWGC	3 cut(s)	161, 328, 540
Tsp45I	GTSAC	1 cut(s)	452
TspDTI	ATGAA	3 cut(s)	147, 302, 668
TspGWI	ACGGA	1 cut(s)	164
TspRI	CASTG	2 cut(s)	192, 463
VpaK11BI	GGWCC	2 cut(s)	338, 352
VspI	ATTAAT	2 cut(s)	150, 201
XapI	RAATTY	1 cut(s)	600
XceI	RCATGY	1 cut(s)	432
XcmI	CCANNNNNNNNNTGG	1 cut(s)	339
XmnI	GAANNNNTTC	1 cut(s)	659
Zsp2I	ATGCAT	1 cut(s)	71

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.