FvH4_3g03750

Equilibrative nucleotide transporter 3-like

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Forward (+)
2097824 .. 2100941
3118 bp
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UTR
Exon/CDS
Intron
FvH4_3g03750.t1

Sequence Viewer

Length: 1341 bp
ATGCCATTTTTGCTTCAACCTTCCATCGAAGTCCATCTTCTCCATGAAACTGGAGTTGCCATGGCCGATGCTCCGCTTCAGGGCAAGTATAAAGCCATTGCAGTTTGTTGGGTTCTTGGACTAGGGACTCTATTTGCGTGGAACAGTATAGTGACTATAGCAGATTACTATTATAATCTTTTTCCGGAATACCATCCTTCGCGGGTTCTTACCTGTGTTTATCAACCATTTGCACTGGCAACATTGGCCATATTTTCATACAAAGAGGCAGAAATTAATACAAGAAGGAGAATCTTAGTTGGTTACACCCTTTTCTTCATTGGTACCTTAACTTTAATTATCGTAGATTTAGTTACATCTGGGGCTGGAGGAAATGGATATTTCATTAGTATATGTGCAATTGTTGGTGGATTTGGGGTAGCAGGTGCCCATGTTGAAGGTGGAGTTGTGGGTGAGCTATCTTTTATGTGCCCTGAATTCATCCAGTCCTTCTTTGCTGGCTTGGGTGCAGCGGGTGCTTTCACTTCTGCCTTAAGGTTGGTAACAAAAGCTGCCTTTGAGAAACATGACAAGGGTCTTCGCAAAGGAGCAATGTTGTTCTTGGGGGTTTCCGCATTCATTGAGCTTTTGTGTGTTCTATCGTATGCAATTTACTTCCCGAGATTGCCTATAGTAAAGTACTACCGCTCAAAGGCAGCCTCAGAAGGCTCTAAAACTGTATCAGCTGATCTTGCTGCTGCTGGCATTCAGGAACAAGCATCGGATGTAGAAGTCAAAAATGATGCTAACCGACCAGATAGATTGAGGAACAAGCAATTATTTATGCAAAATATAGATTATTCTCTCGACTTGTTTCTCATATTTGTACTGACATCGGCTATCTTCCCTGGTTTCTTATTCGAAGATACTGGAGAGCACCAGTTAGGCTCATGGTATCCACTTGTTCTAGTGGCAATATTCAATGTGTTGGATTGGATATCAAGATACATACCTGTTGTGCAATTCCTAAAGATCGAATCCAGAAAGGGTCTCATGATTGCAACTCTAGCTCGTTTTTTATTCGTTCCTGCATTCTACTTAACTGCAAAATATGGAGACCAGGGATGGATGATCATGCTCACCTCAGTCCTAGGATTAACAAATGGTTATCTCAGTGTCTGTGTAATGACAGTGGCACCGCGCGGTTATATGGGACCTGAGCAAAATGCGTTGGGAAACATTCTTGTCCTGTGTCTTTTGTCTGGCATATTTGTAGGGGGTTGTCTTAACTGGTTGTGGCTCATTGGTAAAGACACACATCAAAAGGTCCAACTAGTGAAGAAACAATTTGACACTGGTTAA

Protein Analysis

447

Amino Acids

49.1

Weight (kDa)

8.02

Isoelectric Point (pI)

32.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nucleoside_tran PF01733 139 - 426 7.7e-32 Nucleoside transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 174
AarI CACCTGC 1 cut(s) 413
Acc36I ACCTGC 1 cut(s) 413
Acc65I GGTACC 1 cut(s) 323
AccB1I GGYRCC 3 cut(s) 323, 425, 1174
AccBSI CCGCTC 1 cut(s) 687
AccII CGCG 3 cut(s) 202, 1180, 1182
AccIII TCCGGA 1 cut(s) 184
AciI CCGC 7 cut(s) 74, 202, 512, 612, 685, 1178, 1182
AcoI YGGCCR 2 cut(s) 63, 246
AcsI RAATTY 1 cut(s) 476
AcuI CTGAAG 1 cut(s) 62
AfaI GTAC 3 cut(s) 325, 680, 867
AfiI CCNNNNNNNGG 2 cut(s) 80, 691
AflII CTTAAG 1 cut(s) 532
AgsI TTSAA 3 cut(s) 17, 437, 961
AhlI ACTAGT 1 cut(s) 1312
AjnI CCWGG 2 cut(s) 886, 1098
AluBI AGCT 5 cut(s) 457, 551, 625, 725, 1049
AluI AGCT 5 cut(s) 457, 551, 625, 725, 1049
Alw21I GWGCWC 1 cut(s) 918
Alw26I GTCTC 2 cut(s) 1034, 1089
AlwNI CAGNNNCTG 1 cut(s) 1158
Ama87I CYCGRG 1 cut(s) 658
Aor13HI TCCGGA 1 cut(s) 184
AoxI GGCC 2 cut(s) 63, 246
ApeKI GCWGC 5 cut(s) 509, 551, 695, 734, 737
ApoI RAATTY 1 cut(s) 476
AseI ATTAAT 1 cut(s) 276
Asp718I GGTACC 1 cut(s) 323
AspA2I CCTAGG 1 cut(s) 1129
AspLEI GCGC 1 cut(s) 1182
AspS9I GGNCC 2 cut(s) 1193, 1306
AsuHPI GGTGA 2 cut(s) 464, 1111
AsuII TTCGAA 1 cut(s) 900
AvaI CYCGRG 1 cut(s) 658
AvaII GGWCC 2 cut(s) 1193, 1306
AvrII CCTAGG 1 cut(s) 1129
BaeGI GKGCMC 2 cut(s) 430, 473
BalI TGGCCA 1 cut(s) 248
BanI GGYRCC 3 cut(s) 323, 425, 1174
BbsI GAAGAC 1 cut(s) 569
Bbv12I GWGCWC 1 cut(s) 918
BbvI GCAGC 5 cut(s) 521, 538, 707, 721, 724
BccI CCATC 4 cut(s) 32, 42, 201, 1098
BciT130I CCWGG 2 cut(s) 888, 1100
BciVI GTATCC 1 cut(s) 945
BclI TGATCA 1 cut(s) 1110
BcoDI GTCTC 2 cut(s) 1034, 1089
BcuI ACTAGT 1 cut(s) 1312
BfaI CTAG 5 cut(s) 122, 947, 1046, 1130, 1313
BfmI CTRYAG 2 cut(s) 156, 669
BfrI CTTAAG 1 cut(s) 532
BfuAI ACCTGC 1 cut(s) 413
BfuI GTATCC 1 cut(s) 945
BisI GCNGC 5 cut(s) 510, 552, 696, 735, 738
BlnI CCTAGG 1 cut(s) 1129
BlsI GCNGC 5 cut(s) 511, 553, 697, 736, 739
BmcAI AGTACT 1 cut(s) 680
Bme1390I CCNGG 2 cut(s) 888, 1100
Bme18I GGWCC 2 cut(s) 1193, 1306
BmeT110I CYCGRG 1 cut(s) 658
BmgT120I GGNCC 2 cut(s) 1193, 1306
BmiI GGNNCC 4 cut(s) 325, 427, 1176, 1194
BmrFI CCNGG 2 cut(s) 888, 1100
BmsI GCATC 3 cut(s) 58, 767, 772
BoxI GACNNNNGTC 1 cut(s) 573
BpiI GAAGAC 1 cut(s) 569
BpmI CTGGAG 3 cut(s) 72, 387, 930
Bpu10I CCTNAGC 1 cut(s) 1197
Bpu14I TTCGAA 1 cut(s) 900
BsaI GGTCTC 2 cut(s) 1034, 1089
BsaJI CCNNGG 4 cut(s) 60, 886, 1099, 1129
BsaWI WCCGGW 1 cut(s) 184
Bsc4I CCNNNNNNNGG 2 cut(s) 80, 691
Bse1I ACTGG 7 cut(s) 55, 240, 484, 913, 919, 1274, 1339
Bse3DI GCAATG 2 cut(s) 96, 597
BseAI TCCGGA 1 cut(s) 184
BseBI CCWGG 2 cut(s) 888, 1100
BseDI CCNNGG 4 cut(s) 60, 886, 1099, 1129
BseGI GGATG 5 cut(s) 193, 480, 769, 1109, 1113
BseLI CCNNNNNNNGG 2 cut(s) 80, 691
BseMI GCAATG 2 cut(s) 96, 597
BseMII CTCAG 4 cut(s) 714, 1137, 1165, 1188
BseNI ACTGG 7 cut(s) 55, 240, 484, 913, 919, 1274, 1339
BseSI GKGCMC 2 cut(s) 430, 473
BseXI GCAGC 5 cut(s) 521, 538, 707, 721, 724
BsgI GTGCAG 1 cut(s) 528
Bsh1236I CGCG 3 cut(s) 202, 1180, 1182
BshFI GGCC 2 cut(s) 65, 248
BshNI GGYRCC 3 cut(s) 323, 425, 1174
BsiHKAI GWGCWC 1 cut(s) 918
BsiHKCI CYCGRG 1 cut(s) 658
BsiSI CCGG 1 cut(s) 185
BslFI GGGAC 2 cut(s) 139, 1206
BslI CCNNNNNNNGG 2 cut(s) 80, 691
BsmAI GTCTC 2 cut(s) 1034, 1089
BsmFI GGGAC 2 cut(s) 139, 1206
BsmI GAATGC 3 cut(s) 614, 744, 1070
BsnI GGCC 2 cut(s) 65, 248
Bso31I GGTCTC 2 cut(s) 1034, 1089
BsoBI CYCGRG 1 cut(s) 658
Bsp119I TTCGAA 1 cut(s) 900
Bsp1286I GDGCHC 3 cut(s) 430, 473, 918
Bsp13I TCCGGA 1 cut(s) 184
Bsp143I GATC 3 cut(s) 727, 1011, 1110
Bsp19I CCATGG 1 cut(s) 60
BspACI CCGC 7 cut(s) 74, 202, 512, 612, 685, 1178, 1182
BspANI GGCC 2 cut(s) 65, 248
BspCNI CTCAG 4 cut(s) 713, 1136, 1164, 1189
BspEI TCCGGA 1 cut(s) 184
BspFNI CGCG 3 cut(s) 202, 1180, 1182
BspHI TCATGA 1 cut(s) 1032
BspLI GGNNCC 4 cut(s) 325, 427, 1176, 1194
BspMI ACCTGC 1 cut(s) 413
BspT104I TTCGAA 1 cut(s) 900
BspT107I GGYRCC 3 cut(s) 323, 425, 1174
BspTI CTTAAG 1 cut(s) 532
BspTNI GGTCTC 2 cut(s) 1034, 1089
BsrBI CCGCTC 1 cut(s) 687
BsrDI GCAATG 2 cut(s) 96, 597
BsrI ACTGG 7 cut(s) 55, 240, 484, 913, 919, 1274, 1339
BssECI CCNNGG 4 cut(s) 60, 886, 1099, 1129
BssMI GATC 3 cut(s) 727, 1011, 1110
BssT1I CCWWGG 2 cut(s) 60, 1129
Bst2UI CCWGG 2 cut(s) 888, 1100
Bst4CI ACNGT 3 cut(s) 146, 718, 1171
BstAFI CTTAAG 1 cut(s) 532
BstAPI GCANNNNNTGC 1 cut(s) 515
BstBI TTCGAA 1 cut(s) 900
BstC8I GCNNGC 2 cut(s) 499, 742
BstDEI CTNAG 5 cut(s) 295, 700, 1123, 1151, 1197
BstDSI CCRYGG 1 cut(s) 60
BstF5I GGATG 5 cut(s) 193, 480, 769, 1109, 1113
BstFNI CGCG 3 cut(s) 202, 1180, 1182
BstHHI GCGC 1 cut(s) 1182
BstKTI GATC 3 cut(s) 730, 1014, 1113
BstMAI GTCTC 2 cut(s) 1034, 1089
BstMBI GATC 3 cut(s) 727, 1011, 1110
BstMWI GCNNNNNNNGC 5 cut(s) 10, 245, 515, 731, 1046
BstNI CCWGG 2 cut(s) 888, 1100
BstPAI GACNNNNGTC 1 cut(s) 573
BstSCI CCNGG 2 cut(s) 886, 1098
BstSFI CTRYAG 2 cut(s) 156, 669
BstSLI GKGCMC 2 cut(s) 430, 473
BstUI CGCG 3 cut(s) 202, 1180, 1182
BstV1I GCAGC 5 cut(s) 521, 538, 707, 721, 724
BstV2I GAAGAC 1 cut(s) 569
BstXI CCANNNNNNTGG 1 cut(s) 50
BsuI GTATCC 1 cut(s) 945
BsuRI GGCC 2 cut(s) 65, 248
BtgI CCRYGG 1 cut(s) 60
BtsCI GGATG 5 cut(s) 193, 480, 769, 1109, 1113
BtsIMutI CAGTG 4 cut(s) 233, 1159, 1176, 1332
BveI ACCTGC 1 cut(s) 413
Cac8I GCNNGC 2 cut(s) 499, 742
CaiI CAGNNNCTG 1 cut(s) 1158
CciI TCATGA 1 cut(s) 1032
CfoI GCGC 1 cut(s) 1182
Cfr13I GGNCC 2 cut(s) 1193, 1306
Csp6I GTAC 3 cut(s) 324, 679, 866
CviAII CATG 7 cut(s) 44, 61, 431, 566, 930, 1033, 1114
CviQI GTAC 3 cut(s) 324, 679, 866
DdeI CTNAG 5 cut(s) 295, 700, 1123, 1151, 1197
DpnI GATC 3 cut(s) 729, 1013, 1112
DpnII GATC 3 cut(s) 727, 1011, 1110
EaeI YGGCCR 2 cut(s) 63, 246
Eco130I CCWWGG 2 cut(s) 60, 1129
Eco31I GGTCTC 2 cut(s) 1034, 1089
Eco32I GATATC 1 cut(s) 978
Eco47I GGWCC 2 cut(s) 1193, 1306
Eco57I CTGAAG 1 cut(s) 62
Eco88I CYCGRG 1 cut(s) 658
EcoO109I RGGNCCY 1 cut(s) 1193
EcoRI GAATTC 1 cut(s) 476
EcoRII CCWGG 2 cut(s) 886, 1098
EcoRV GATATC 1 cut(s) 978
EcoT14I CCWWGG 2 cut(s) 60, 1129
ErhI CCWWGG 2 cut(s) 60, 1129
FaeI CATG 7 cut(s) 47, 64, 434, 569, 933, 1036, 1117
FalI AAGNNNNNCTT 2 cut(s) 21, 53
FaqI GGGAC 2 cut(s) 139, 1206
FatI CATG 7 cut(s) 43, 60, 430, 565, 929, 1032, 1113
FauI CCCGC 2 cut(s) 195, 505
FbaI TGATCA 1 cut(s) 1110
Fnu4HI GCNGC 5 cut(s) 510, 552, 696, 735, 738
FokI GGATG 5 cut(s) 180, 467, 776, 1116, 1120
Fsp4HI GCNGC 5 cut(s) 510, 552, 696, 735, 738
FspBI CTAG 5 cut(s) 122, 947, 1046, 1130, 1313
GlaI GCGC 1 cut(s) 1181
GluI GCNGC 5 cut(s) 510, 552, 696, 735, 738
GsuI CTGGAG 3 cut(s) 72, 387, 930
HaeIII GGCC 2 cut(s) 65, 248
HapII CCGG 1 cut(s) 185
HhaI GCGC 1 cut(s) 1182
Hin1II CATG 7 cut(s) 47, 64, 434, 569, 933, 1036, 1117
Hin6I GCGC 1 cut(s) 1180
HinP1I GCGC 1 cut(s) 1180
HinfI GANTC 3 cut(s) 127, 291, 1016
HpaII CCGG 1 cut(s) 185
HphI GGTGA 2 cut(s) 464, 1111
Hpy188I TCNGA 2 cut(s) 703, 763
Hpy188III TCNNGA 7 cut(s) 185, 658, 749, 845, 981, 1020, 1033
HpyAV CCTTC 6 cut(s) 30, 207, 279, 431, 499, 698
HpyCH4III ACNGT 3 cut(s) 146, 718, 1171
HpyF10VI GCNNNNNNNGC 5 cut(s) 10, 245, 515, 731, 1046
HpyF3I CTNAG 5 cut(s) 295, 700, 1123, 1151, 1197
Hsp92II CATG 7 cut(s) 47, 64, 434, 569, 933, 1036, 1117
HspAI GCGC 1 cut(s) 1180
Kpn2I TCCGGA 1 cut(s) 184
KpnI GGTACC 1 cut(s) 327
Ksp22I TGATCA 1 cut(s) 1110
Kzo9I GATC 3 cut(s) 727, 1011, 1110
LmnI GCTCC 2 cut(s) 76, 587
Lsp1109I GCAGC 5 cut(s) 521, 538, 707, 721, 724
LweI GCATC 3 cut(s) 58, 767, 772
MaeI CTAG 5 cut(s) 122, 947, 1046, 1130, 1313
MaeIII GTNAC 4 cut(s) 151, 302, 352, 541
MalI GATC 3 cut(s) 729, 1013, 1112
MbiI CCGCTC 1 cut(s) 687
MboI GATC 3 cut(s) 727, 1011, 1110
MboII GAAGA 6 cut(s) 29, 307, 569, 874, 914, 1330
MfeI CAATTG 1 cut(s) 399
MhlI GDGCHC 3 cut(s) 430, 473, 918
MlsI TGGCCA 1 cut(s) 248
MluCI AATT 8 cut(s) 273, 336, 399, 476, 648, 815, 1001, 1325
MluNI TGGCCA 1 cut(s) 248
MlyI GAGTC 1 cut(s) 121
MmeI TCCRAC 2 cut(s) 948, 1333
MnlI CCTC 5 cut(s) 259, 362, 709, 798, 1132
Mox20I TGGCCA 1 cut(s) 248
MroI TCCGGA 1 cut(s) 184
MscI TGGCCA 1 cut(s) 248
MseI TTAA 8 cut(s) 276, 329, 335, 533, 1079, 1136, 1266, 1339
Msp20I TGGCCA 1 cut(s) 248
MspA1I CMGCKG 2 cut(s) 512, 725
MspCI CTTAAG 1 cut(s) 532
MspI CCGG 1 cut(s) 185
MspR9I CCNGG 2 cut(s) 888, 1100
MunI CAATTG 1 cut(s) 399
Mva1269I GAATGC 3 cut(s) 614, 744, 1070
MvaI CCWGG 2 cut(s) 888, 1100
MvnI CGCG 3 cut(s) 202, 1180, 1182
MwoI GCNNNNNNNGC 5 cut(s) 10, 245, 515, 731, 1046
NcoI CCATGG 1 cut(s) 60
NdeII GATC 3 cut(s) 727, 1011, 1110
NlaIII CATG 7 cut(s) 47, 64, 434, 569, 933, 1036, 1117
NlaIV GGNNCC 4 cut(s) 325, 427, 1176, 1194
NmuCI GTSAC 1 cut(s) 151
NspV TTCGAA 1 cut(s) 900
PagI TCATGA 1 cut(s) 1032
PaqCI CACCTGC 1 cut(s) 413
PctI GAATGC 3 cut(s) 614, 744, 1070
PfeI GAWTC 2 cut(s) 291, 1016
PkrI GCNGC 5 cut(s) 511, 553, 697, 736, 739
PleI GAGTC 1 cut(s) 121
PpsI GAGTC 1 cut(s) 121
PpuMI RGGWCCY 1 cut(s) 1193
PshAI GACNNNNGTC 1 cut(s) 573
PshBI ATTAAT 1 cut(s) 276
PsiI TTATAA 1 cut(s) 174
Psp5II RGGWCCY 1 cut(s) 1193
Psp6I CCWGG 2 cut(s) 886, 1098
PspGI CCWGG 2 cut(s) 886, 1098
PspN4I GGNNCC 4 cut(s) 325, 427, 1176, 1194
PspPI GGNCC 2 cut(s) 1193, 1306
PspPPI RGGWCCY 1 cut(s) 1193
PstNI CAGNNNCTG 1 cut(s) 1158
PvuII CAGCTG 1 cut(s) 725
RsaI GTAC 3 cut(s) 325, 680, 867
RsaNI GTAC 3 cut(s) 324, 679, 866
SaqAI TTAA 8 cut(s) 276, 329, 335, 533, 1079, 1136, 1266, 1339
SatI GCNGC 5 cut(s) 510, 552, 696, 735, 738
Sau3AI GATC 3 cut(s) 727, 1011, 1110
Sau96I GGNCC 2 cut(s) 1193, 1306
ScaI AGTACT 1 cut(s) 680
SchI GAGTC 1 cut(s) 121
ScrFI CCNGG 2 cut(s) 888, 1100
SduI GDGCHC 3 cut(s) 430, 473, 918
SfaNI GCATC 3 cut(s) 58, 767, 772
SfcI CTRYAG 2 cut(s) 156, 669
SfuI TTCGAA 1 cut(s) 900
SinI GGWCC 2 cut(s) 1193, 1306
SmlI CTYRAG 1 cut(s) 532
SmoI CTYRAG 1 cut(s) 532
SpeI ACTAGT 1 cut(s) 1312
Sse9I AATT 8 cut(s) 273, 336, 399, 476, 648, 815, 1001, 1325
SsiI CCGC 7 cut(s) 74, 202, 512, 612, 685, 1178, 1182
SspI AATATT 1 cut(s) 957
SspMI CTAG 5 cut(s) 122, 947, 1046, 1130, 1313
StyD4I CCNGG 2 cut(s) 886, 1098
StyI CCWWGG 2 cut(s) 60, 1129
TaaI ACNGT 3 cut(s) 146, 718, 1171
TaqI TCGA 4 cut(s) 27, 846, 900, 1014
TasI AATT 8 cut(s) 273, 336, 399, 476, 648, 815, 1001, 1325
TatI WGTACW 2 cut(s) 678, 865
TfiI GAWTC 2 cut(s) 291, 1016
Tru1I TTAA 8 cut(s) 276, 329, 335, 533, 1079, 1136, 1266, 1339
Tru9I TTAA 8 cut(s) 276, 329, 335, 533, 1079, 1136, 1266, 1339
TscAI CASTG 4 cut(s) 240, 1159, 1176, 1339
TseFI GTSAC 1 cut(s) 151
TseI GCWGC 5 cut(s) 509, 551, 695, 734, 737
Tsp45I GTSAC 1 cut(s) 151
TspDTI ATGAA 6 cut(s) 60, 246, 307, 373, 469, 607
TspRI CASTG 4 cut(s) 240, 1159, 1176, 1339
Vha464I CTTAAG 1 cut(s) 532
VpaK11BI GGWCC 2 cut(s) 1193, 1306
VspI ATTAAT 1 cut(s) 276
XapI RAATTY 1 cut(s) 476
XcmI CCANNNNNNNNNTGG 1 cut(s) 437
XmaJI CCTAGG 1 cut(s) 1129
XspI CTAG 5 cut(s) 122, 947, 1046, 1130, 1313
ZrmI AGTACT 1 cut(s) 680
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.