Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001163

Physical Location & Seq

Genomic Coordinates Forward (+)

3682471 .. 3683240

Gene Structure 770 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ28700

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGCTAATATTCGTGGATTTAGCTACATCTGGGACTGGAGGATTTGGATATTTCATCGCTACATGCGCAATTGTTGGTGCATTTGGGGTTGCAGGTGGAAATGTTGAAGGTGCGGTTATGGGTGAACTATCTTTTATGCGTCCTGAATTCATCCAGAAATATGACAACGGTCTTCGCAAGGGAGCAAGTATGCCAATTTTCTGTACTAAAAGGCCTATTAGTGAACAGTTCATCTTCATTTCACTATATATCTATATTGAGTTATTTATACTTTCGAATCAACTTTTAATTGTTCCGAATTCTGACAATTGTTTGCACTTTGCAGTGTTGTTCTTGGCAACTTCCACATTCATTGAGCTTCTCTGTATACTTTTATATGCAATTTACTTCCCAAGATTGCCTATAGTAGAGTACTACCGCTCAAAGGCAGCCTCAGAAGGCTTTACAAGTTTACAACTATATCCGCTGATCTCGCCGCTGCTGGCATTCAGGAACATGCATCAGATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005337 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0015858 GO:0015931 GO:0015932 GO:0016020 GO:0022857 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:1901264 GO:1901505 GO:1901642

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nucleoside_tran

Protein Analysis

169

Amino Acids

18.85

Weight (kDa)

6.07

Isoelectric Point (pI)

42.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001163)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61630 AT4G05110 AT4G05110 AT4G05110 AT4G05120 AT4G05120 AT4G05130 AT4G05140
fragaria_vesca	FvH4_3g03740 FvH4_3g03740 FvH4_3g03740 FvH4_3g03740 FvH4_3g03750 FvH4_5g10501
malus_domestica	MD05G1326900.v1.1 MD10G1305000.v1.1
prunus_persica	Prupe.4G034600_v2.0.a1
pyrus_communis	pycom05g30120 pycom10g25750
rosa_chinensis	RchiOBHm_Chr5g0005801 RchiOBHm_Chr5g0005811 RchiOBHm_Chr5g0005821 RchiOBHm_Chr7g0187631
rosa_laevigata	RLG00000004764 RLG00000031327 RLG00000031328 RLG00000031329
rosa_multiflora	Rmu_sc0002694.1_g000001
rosa_roxburghii	Rroxscaffold_1G00070040 Rroxscaffold_1G00070050 Rroxscaffold_1G00070060 Rroxscaffold_3G00267210
rosa_rugosa	Rorug04G0418200 Rorug04G0418300 Rorug04G0418400 Rorug04G0418500 Rorug04G0418500 Rorug04G0418600 Rorug04G0418700 Rorug06G0483300
rosa_samantha	Rh5AG045700 Rh5AG045800 Rh5AG045900 Rh5BG044400 Rh5BG044600 Rh5CG053200 Rh5CG053400 Rh5CG053500 Rh5DG044300 Rh7AG088200 Rh7BG089500 Rh7CG088800 Rh7DG090500
rosa_wichuraiana	Rw0G002660 Rw5G004600 Rw5G004610 Rw5G004620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	83
Acc16I	TGCGCA	1 cut(s)	67
Acc36I	ACCTGC	1 cut(s)	83
AccBSI	CCGCTC	1 cut(s)	420
AccI	GTMKAC	1 cut(s)	367
AciI	CCGC	4 cut(s)	113, 418, 464, 476
AcsI	RAATTY	2 cut(s)	146, 298
AfaI	GTAC	2 cut(s)	205, 413
AfiI	CCNNNNNNNGG	1 cut(s)	424
AgsI	TTSAA	1 cut(s)	107
AluBI	AGCT	2 cut(s)	23, 358
AluI	AGCT	2 cut(s)	23, 358
AoxI	GGCC	1 cut(s)	212
ApeKI	GCWGC	2 cut(s)	428, 478
ApoI	RAATTY	2 cut(s)	146, 298
AspLEI	GCGC	1 cut(s)	68
AsuHPI	GGTGA	1 cut(s)	134
AsuII	TTCGAA	1 cut(s)	275
BbsI	GAAGAC	1 cut(s)	164
BbvI	GCAGC	2 cut(s)	440, 465
BfmI	CTRYAG	1 cut(s)	402
BfuAI	ACCTGC	1 cut(s)	83
BisI	GCNGC	3 cut(s)	429, 476, 479
BlsI	GCNGC	3 cut(s)	430, 477, 480
BmcAI	AGTACT	1 cut(s)	413
BoxI	GACNNNNGTC	1 cut(s)	168
BpiI	GAAGAC	1 cut(s)	164
BpmI	CTGGAG	1 cut(s)	57
Bpu14I	TTCGAA	1 cut(s)	275
Bsc4I	CCNNNNNNNGG	1 cut(s)	424
Bse1I	ACTGG	1 cut(s)	40
BseGI	GGATG	1 cut(s)	150
BseLI	CCNNNNNNNGG	1 cut(s)	424
BseMII	CTCAG	1 cut(s)	447
BseNI	ACTGG	1 cut(s)	40
BseXI	GCAGC	2 cut(s)	440, 465
BshFI	GGCC	1 cut(s)	214
BslFI	GGGAC	1 cut(s)	46
BslI	CCNNNNNNNGG	1 cut(s)	424
BsmFI	GGGAC	1 cut(s)	46
BsmI	GAATGC	1 cut(s)	485
BsnI	GGCC	1 cut(s)	214
Bsp119I	TTCGAA	1 cut(s)	275
Bsp143I	GATC	1 cut(s)	468
BspACI	CCGC	4 cut(s)	113, 418, 464, 476
BspANI	GGCC	1 cut(s)	214
BspCNI	CTCAG	1 cut(s)	446
BspMI	ACCTGC	1 cut(s)	83
BspT104I	TTCGAA	1 cut(s)	275
BsrBI	CCGCTC	1 cut(s)	420
BsrI	ACTGG	1 cut(s)	40
BssMI	GATC	1 cut(s)	468
BssNAI	GTATAC	1 cut(s)	368
Bst1107I	GTATAC	1 cut(s)	368
Bst4CI	ACNGT	2 cut(s)	170, 228
BstBI	TTCGAA	1 cut(s)	275
BstC8I	GCNNGC	1 cut(s)	483
BstDEI	CTNAG	1 cut(s)	433
BstF5I	GGATG	1 cut(s)	150
BstHHI	GCGC	1 cut(s)	68
BstKTI	GATC	1 cut(s)	471
BstMBI	GATC	1 cut(s)	468
BstMWI	GCNNNNNNNGC	2 cut(s)	65, 472
BstNSI	RCATGY	2 cut(s)	66, 499
BstPAI	GACNNNNGTC	1 cut(s)	168
BstSFI	CTRYAG	1 cut(s)	402
BstV1I	GCAGC	2 cut(s)	440, 465
BstV2I	GAAGAC	1 cut(s)	164
BstZ17I	GTATAC	1 cut(s)	368
BsuRI	GGCC	1 cut(s)	214
BtgZI	GCGATG	1 cut(s)	40
BtsCI	GGATG	1 cut(s)	150
BtsI	GCAGTG	1 cut(s)	330
BtsIMutI	CAGTG	1 cut(s)	330
BveI	ACCTGC	1 cut(s)	83
Cac8I	GCNNGC	1 cut(s)	483
CfoI	GCGC	1 cut(s)	68
CseI	GACGC	1 cut(s)	128
Csp6I	GTAC	2 cut(s)	204, 412
CspCI	CAANNNNNGTGG	2 cut(s)	334, 369
CviAII	CATG	2 cut(s)	63, 496
CviJI	RGCY	5 cut(s)	23, 214, 358, 431, 441
CviKI_1	RGCY	5 cut(s)	23, 214, 358, 431, 441
CviQI	GTAC	2 cut(s)	204, 412
DdeI	CTNAG	1 cut(s)	433
DpnI	GATC	1 cut(s)	470
DpnII	GATC	1 cut(s)	468
Eco147I	AGGCCT	1 cut(s)	214
EcoRI	GAATTC	2 cut(s)	146, 298
EcoT22I	ATGCAT	1 cut(s)	501
FaeI	CATG	2 cut(s)	66, 499
FaqI	GGGAC	1 cut(s)	46
FatI	CATG	2 cut(s)	62, 495
FblI	GTMKAC	1 cut(s)	367
Fnu4HI	GCNGC	3 cut(s)	429, 476, 479
FokI	GGATG	1 cut(s)	137
Fsp4HI	GCNGC	3 cut(s)	429, 476, 479
FspI	TGCGCA	1 cut(s)	67
GlaI	GCGC	1 cut(s)	67
GluI	GCNGC	3 cut(s)	429, 476, 479
GsuI	CTGGAG	1 cut(s)	57
HaeIII	GGCC	1 cut(s)	214
HgaI	GACGC	1 cut(s)	128
HhaI	GCGC	1 cut(s)	68
Hin1II	CATG	2 cut(s)	66, 499
Hin6I	GCGC	1 cut(s)	66
HinP1I	GCGC	1 cut(s)	66
HinfI	GANTC	1 cut(s)	277
HphI	GGTGA	1 cut(s)	134
Hpy166II	GTNNAC	4 cut(s)	125, 224, 368, 452
Hpy188I	TCNGA	4 cut(s)	297, 304, 436, 504
Hpy188III	TCNNGA	3 cut(s)	143, 154, 490
Hpy8I	GTNNAC	4 cut(s)	125, 224, 368, 452
HpyAV	CCTTC	2 cut(s)	101, 431
HpyCH4III	ACNGT	2 cut(s)	170, 228
HpyCH4V	TGCA	6 cut(s)	80, 92, 316, 323, 380, 499
HpyF10VI	GCNNNNNNNGC	2 cut(s)	65, 472
HpyF3I	CTNAG	1 cut(s)	433
Hsp92II	CATG	2 cut(s)	66, 499
HspAI	GCGC	1 cut(s)	66
Kzo9I	GATC	1 cut(s)	468
LmnI	GCTCC	1 cut(s)	182
LpnPI	CCDG	7 cut(s)	15, 21, 78, 156, 167, 467, 475
Lsp1109I	GCAGC	2 cut(s)	440, 465
MalI	GATC	1 cut(s)	470
MbiI	CCGCTC	1 cut(s)	420
MboI	GATC	1 cut(s)	468
MboII	GAAGA	2 cut(s)	164, 226
MfeI	CAATTG	2 cut(s)	69, 307
MluCI	AATT	7 cut(s)	69, 146, 195, 288, 298, 307, 381
MnlI	CCTC	2 cut(s)	32, 442
Mph1103I	ATGCAT	1 cut(s)	501
MseI	TTAA	1 cut(s)	287
MspA1I	CMGCKG	2 cut(s)	466, 478
MunI	CAATTG	2 cut(s)	69, 307
Mva1269I	GAATGC	1 cut(s)	485
MwoI	GCNNNNNNNGC	2 cut(s)	65, 472
NdeII	GATC	1 cut(s)	468
NlaIII	CATG	2 cut(s)	66, 499
NsbI	TGCGCA	1 cut(s)	67
NsiI	ATGCAT	1 cut(s)	501
NspI	RCATGY	2 cut(s)	66, 499
NspV	TTCGAA	1 cut(s)	275
PaqCI	CACCTGC	1 cut(s)	83
PceI	AGGCCT	1 cut(s)	214
PctI	GAATGC	1 cut(s)	485
PfeI	GAWTC	1 cut(s)	277
PkrI	GCNGC	3 cut(s)	430, 477, 480
PshAI	GACNNNNGTC	1 cut(s)	168
RsaI	GTAC	2 cut(s)	205, 413
RsaNI	GTAC	2 cut(s)	204, 412
SaqAI	TTAA	1 cut(s)	287
SatI	GCNGC	3 cut(s)	429, 476, 479
Sau3AI	GATC	1 cut(s)	468
ScaI	AGTACT	1 cut(s)	413
SetI	ASST	4 cut(s)	25, 97, 112, 360
SfcI	CTRYAG	1 cut(s)	402
SfuI	TTCGAA	1 cut(s)	275
Sse9I	AATT	7 cut(s)	69, 146, 195, 288, 298, 307, 381
SseBI	AGGCCT	1 cut(s)	214
SsiI	CCGC	4 cut(s)	113, 418, 464, 476
SspI	AATATT	1 cut(s)	9
StuI	AGGCCT	1 cut(s)	214
TaaI	ACNGT	2 cut(s)	170, 228
TaqI	TCGA	1 cut(s)	275
TasI	AATT	7 cut(s)	69, 146, 195, 288, 298, 307, 381
TatI	WGTACW	2 cut(s)	203, 411
TauI	GCSGC	1 cut(s)	478
TfiI	GAWTC	1 cut(s)	277
Tru1I	TTAA	1 cut(s)	287
Tru9I	TTAA	1 cut(s)	287
TscAI	CASTG	1 cut(s)	330
TseI	GCWGC	2 cut(s)	428, 478
TspDTI	ATGAA	5 cut(s)	43, 139, 220, 226, 340
TspRI	CASTG	1 cut(s)	330
XapI	RAATTY	2 cut(s)	146, 298
XceI	RCATGY	2 cut(s)	66, 499
XmiI	GTMKAC	1 cut(s)	367
ZrmI	AGTACT	1 cut(s)	413
Zsp2I	ATGCAT	1 cut(s)	501

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.