Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001163

Physical Location & Seq

Genomic Coordinates Reverse (-)

2636547 .. 2639279

Gene Structure 2733 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G05130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1257 bp

ATGGCGGATGGATACGAGAACCATGCTCCTGAAAACCTTCAGGGGAAATATCAAGCAATGGTTGTTTGTTGTATTCTTGGAATTGGATCTCTCTTTTCTTGGAATAGTATGCTCACTATCGCAGATTACTACTATCAAGTTTTCCCGGATTATCATCCTTCAAGGGTATTCACACTTATATACCAACCAATTGCCCTTGGAACAATCATGATTCTCGCATACCGCGAATCGAAAATCAGTACTAGGAAACGTATCCTTACCGGTTACATCCTATTCACGATATCCACATTCTTGCTGATAGTCTTGGATTTGACAACAAAAGGACACGGTGGAATCGGACATTATATTGTCTTATGCACAATTGTTGCTTCTTTTGGCCTTGCGGATGCGACCGTTAAAGGAGGATTGGTCGGTGATTTATCTTTGATGTGCCCTGAACTTATCCAGTCATATATGGCCGGTTCGGGTATGGCTGGTGCTCTAACCTCAGTGCTTAGGCTAATAACTAAAGCAGCATTTGAGAAATCAAACAATAGTTTACGAAAAGGAGCAATGATATTCTTAGCAATCTCAACCTTCATAGAACTACTCTGCGTGATTTTATATGCATATGTGTTCCCAAAACTCCCCATCGTTAAGTATTACCGAAGAAAAGCCGCTTCTGAAGGATCTAAAACTGTTGTTGCTGATCTTGCTGCTGCTGGTATCCAAAATTTATCAGATTTGAGTGATGATGATTCCAAGAATCAAATGCTAAGAAAGAAAGAGTTGTTGCTTCAAAACATAGACCATGCAGTGAATCTATTCCTCATCTACGTTTTGACATTATCCATTTTTCCTGGATTCTTATACGAAAACACGGGACAACACGGACTAGGTGATTGGTATGCACTTATCCTAGTAGCGACATACAATTTTTGGGATTTGTTCGGGAGGTACGCACCGCTGGTGAAATGGCTGAAGCTTGAGAATAGAAAGGCCCTAACGATTGCGGTCTTGACCCGTTATTTCCTCGTTCCGGCATTCTATTTCACTGCAAAATATGGTGATAAAGGATGGATGATTATGCTCGTTTCTATTTTGGGATTAACTACTGGACATCTCACTGTTTGCATTATGACTATAGCCCCTAACGGGTACAAGGGTCCGGAGAAGAATGCATTAGGGAATTTGCTGGTGGTTTTTATTTTAGGAGGAGCAGTTGTAGGAATTTCTTTGGGTTGGTTATGGCTTATTGGCAAGAAATATGCTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005337 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0015858 GO:0015931 GO:0015932 GO:0016020 GO:0022857 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:1901264 GO:1901505 GO:1901642

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nucleoside_tran

Protein Analysis

418

Amino Acids

46.29

Weight (kDa)

9.11

Isoelectric Point (pI)

31.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nucleoside_tran	PF01733	122 - 410	2.2e-31	Nucleoside transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001163)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61630 AT4G05110 AT4G05110 AT4G05110 AT4G05120 AT4G05120 AT4G05130 AT4G05140
fragaria_vesca	FvH4_3g03740 FvH4_3g03740 FvH4_3g03740 FvH4_3g03740 FvH4_3g03750 FvH4_5g10501
malus_domestica	MD05G1326900.v1.1 MD10G1305000.v1.1
prunus_persica	Prupe.4G034600_v2.0.a1
pyrus_communis	pycom05g30120 pycom10g25750
rosa_chinensis	RchiOBHm_Chr5g0005801 RchiOBHm_Chr5g0005811 RchiOBHm_Chr5g0005821 RchiOBHm_Chr7g0187631
rosa_laevigata	RLG00000004764 RLG00000031327 RLG00000031328 RLG00000031329
rosa_multiflora	Rmu_sc0002694.1_g000001
rosa_roxburghii	Rroxscaffold_1G00070040 Rroxscaffold_1G00070050 Rroxscaffold_1G00070060 Rroxscaffold_3G00267210
rosa_rugosa	Rorug04G0418200 Rorug04G0418300 Rorug04G0418400 Rorug04G0418500 Rorug04G0418500 Rorug04G0418600 Rorug04G0418700 Rorug06G0483300
rosa_samantha	Rh5AG045700 Rh5AG045800 Rh5AG045900 Rh5BG044400 Rh5BG044600 Rh5CG053200 Rh5CG053400 Rh5CG053500 Rh5DG044300 Rh7AG088200 Rh7BG089500 Rh7CG088800 Rh7DG090500
rosa_wichuraiana	Rw0G002660 Rw5G004600 Rw5G004610 Rw5G004620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	225
AccIII	TCCGGA	1 cut(s)	1147
AciI	CCGC	6 cut(s)	5, 223, 383, 657, 944, 992
AclWI	GGATC	2 cut(s)	94, 676
AcoI	YGGCCR	1 cut(s)	456
AcsI	RAATTY	3 cut(s)	712, 1168, 1209
AcuI	CTGAAG	3 cut(s)	23, 684, 980
AfaI	GTAC	3 cut(s)	241, 938, 1139
AfiI	CCNNNNNNNGG	2 cut(s)	1018, 1134
AgeI	ACCGGT	1 cut(s)	260
AgsI	TTSAA	2 cut(s)	162, 779
AjnI	CCWGG	1 cut(s)	838
AluBI	AGCT	1 cut(s)	964
AluI	AGCT	1 cut(s)	964
Alw21I	GWGCWC	1 cut(s)	481
AlwI	GGATC	2 cut(s)	94, 676
Aor13HI	TCCGGA	1 cut(s)	1147
AoxI	GGCC	3 cut(s)	376, 456, 978
ApeKI	GCWGC	3 cut(s)	512, 695, 698
ApoI	RAATTY	3 cut(s)	712, 1168, 1209
AsiGI	ACCGGT	1 cut(s)	260
Asp700I	GAANNNNTTC	2 cut(s)	36, 803
AspS9I	GGNCC	2 cut(s)	979, 1145
AsuC2I	CCSGG	1 cut(s)	146
AsuHPI	GGTGA	4 cut(s)	425, 890, 961, 1058
AvaII	GGWCC	1 cut(s)	1145
BaeGI	GKGCMC	1 cut(s)	434
BaeI	ACNNNNGTAYC	2 cut(s)	1129, 1162
Bbv12I	GWGCWC	1 cut(s)	481
BbvI	GCAGC	3 cut(s)	524, 682, 685
BccI	CCATC	3 cut(s)	2, 638, 1050
BcgI	CGANNNNNNTGC	2 cut(s)	5, 39
BciT130I	CCWGG	1 cut(s)	840
BciVI	GTATCC	3 cut(s)	5, 263, 716
BcnI	CCSGG	1 cut(s)	146
BfaI	CTAG	3 cut(s)	243, 875, 899
BfmI	CTRYAG	1 cut(s)	1122
BfuI	GTATCC	3 cut(s)	5, 263, 716
BisI	GCNGC	4 cut(s)	513, 657, 696, 699
BlsI	GCNGC	4 cut(s)	514, 658, 697, 700
BmcAI	AGTACT	1 cut(s)	241
Bme1390I	CCNGG	2 cut(s)	146, 840
Bme18I	GGWCC	1 cut(s)	1145
BmgT120I	GGNCC	2 cut(s)	979, 1145
BmiI	GGNNCC	1 cut(s)	1146
BmrFI	CCNGG	2 cut(s)	146, 840
BmsI	GCATC	1 cut(s)	376
Bpu10I	CCTNAGC	1 cut(s)	494
BpuEI	CTTGAG	1 cut(s)	986
BpuMI	CCSGG	1 cut(s)	146
BsaBI	GATNNNNATC	1 cut(s)	153
BsaJI	CCNNGG	1 cut(s)	196
BsaWI	WCCGGW	2 cut(s)	260, 1147
BsaXI	ACNNNNNCTCC	6 cut(s)	393, 423, 1185, 1188, 1215, 1218
Bsc4I	CCNNNNNNNGG	2 cut(s)	1018, 1134
Bse118I	RCCGGY	2 cut(s)	260, 458
Bse1I	ACTGG	2 cut(s)	445, 1099
Bse3DI	GCAATG	2 cut(s)	63, 558
Bse8I	GATNNNNATC	1 cut(s)	153
BseAI	TCCGGA	1 cut(s)	1147
BseBI	CCWGG	1 cut(s)	840
BseDI	CCNNGG	1 cut(s)	196
BseGI	GGATG	6 cut(s)	13, 154, 267, 391, 1061, 1065
BseJI	GATNNNNATC	1 cut(s)	153
BseLI	CCNNNNNNNGG	2 cut(s)	1018, 1134
BseMI	GCAATG	2 cut(s)	63, 558
BseMII	CTCAG	1 cut(s)	501
BseNI	ACTGG	2 cut(s)	445, 1099
BseRI	GAGGAG	1 cut(s)	1209
BseSI	GKGCMC	1 cut(s)	434
BseXI	GCAGC	3 cut(s)	524, 682, 685
Bsh1236I	CGCG	1 cut(s)	225
Bsh1285I	CGRYCG	1 cut(s)	393
BshFI	GGCC	3 cut(s)	378, 458, 980
BshTI	ACCGGT	1 cut(s)	260
BsiEI	CGRYCG	1 cut(s)	393
BsiHKAI	GWGCWC	1 cut(s)	481
BsiSI	CCGG	5 cut(s)	146, 261, 459, 1019, 1148
BslFI	GGGAC	1 cut(s)	876
BslI	CCNNNNNNNGG	2 cut(s)	1018, 1134
BsmFI	GGGAC	1 cut(s)	876
BsmI	GAATGC	2 cut(s)	1022, 1162
BsnI	GGCC	3 cut(s)	378, 458, 980
Bsp1286I	GDGCHC	2 cut(s)	434, 481
Bsp13I	TCCGGA	1 cut(s)	1147
Bsp143I	GATC	3 cut(s)	86, 668, 688
BspACI	CCGC	6 cut(s)	5, 223, 383, 657, 944, 992
BspANI	GGCC	3 cut(s)	378, 458, 980
BspCNI	CTCAG	1 cut(s)	500
BspEI	TCCGGA	1 cut(s)	1147
BspFNI	CGCG	1 cut(s)	225
BspHI	TCATGA	1 cut(s)	207
BspLI	GGNNCC	1 cut(s)	1146
BspPI	GGATC	2 cut(s)	94, 676
BsrDI	GCAATG	2 cut(s)	63, 558
BsrFI	RCCGGY	2 cut(s)	260, 458
BsrI	ACTGG	2 cut(s)	445, 1099
BssAI	RCCGGY	2 cut(s)	260, 458
BssECI	CCNNGG	1 cut(s)	196
BssMI	GATC	3 cut(s)	86, 668, 688
BssT1I	CCWWGG	1 cut(s)	196
Bst2UI	CCWGG	1 cut(s)	840
Bst4CI	ACNGT	4 cut(s)	329, 394, 679, 1108
BstDEI	CTNAG	4 cut(s)	487, 494, 562, 755
BstF5I	GGATG	6 cut(s)	13, 154, 267, 391, 1061, 1065
BstFNI	CGCG	1 cut(s)	225
BstKTI	GATC	3 cut(s)	89, 671, 691
BstMBI	GATC	3 cut(s)	86, 668, 688
BstMCI	CGRYCG	1 cut(s)	393
BstMWI	GCNNNNNNNGC	1 cut(s)	692
BstNI	CCWGG	1 cut(s)	840
BstSCI	CCNGG	2 cut(s)	144, 838
BstSFI	CTRYAG	1 cut(s)	1122
BstSLI	GKGCMC	1 cut(s)	434
BstUI	CGCG	1 cut(s)	225
BstV1I	GCAGC	3 cut(s)	524, 682, 685
BstX2I	RGATCY	2 cut(s)	86, 668
BstYI	RGATCY	2 cut(s)	86, 668
BsuI	GTATCC	3 cut(s)	5, 263, 716
BsuRI	GGCC	3 cut(s)	378, 458, 980
BtsCI	GGATG	6 cut(s)	13, 154, 267, 391, 1061, 1065
BtsI	GCAGTG	2 cut(s)	801, 1032
BtsIMutI	CAGTG	4 cut(s)	495, 801, 1032, 1104
CciI	TCATGA	1 cut(s)	207
Cfr10I	RCCGGY	2 cut(s)	260, 458
Cfr13I	GGNCC	2 cut(s)	979, 1145
Csp6I	GTAC	3 cut(s)	240, 937, 1138
CspAI	ACCGGT	1 cut(s)	260
CviAII	CATG	3 cut(s)	23, 208, 791
CviQI	GTAC	3 cut(s)	240, 937, 1138
DdeI	CTNAG	4 cut(s)	487, 494, 562, 755
DpnI	GATC	3 cut(s)	88, 670, 690
DpnII	GATC	3 cut(s)	86, 668, 688
EaeI	YGGCCR	1 cut(s)	456
EciI	GGCGGA	1 cut(s)	20
Eco130I	CCWWGG	1 cut(s)	196
Eco32I	GATATC	1 cut(s)	282
Eco47I	GGWCC	1 cut(s)	1145
Eco57I	CTGAAG	3 cut(s)	23, 684, 980
EcoO109I	RGGNCCY	1 cut(s)	979
EcoRII	CCWGG	1 cut(s)	838
EcoRV	GATATC	1 cut(s)	282
EcoT14I	CCWWGG	1 cut(s)	196
EcoT22I	ATGCAT	2 cut(s)	610, 1162
ErhI	CCWWGG	1 cut(s)	196
FaeI	CATG	3 cut(s)	26, 211, 794
FaqI	GGGAC	1 cut(s)	876
FatI	CATG	3 cut(s)	22, 207, 790
FauNDI	CATATG	1 cut(s)	610
Fnu4HI	GCNGC	4 cut(s)	513, 657, 696, 699
FokI	GGATG	6 cut(s)	20, 141, 254, 398, 1068, 1072
Fsp4HI	GCNGC	4 cut(s)	513, 657, 696, 699
FspBI	CTAG	3 cut(s)	243, 875, 899
GluI	GCNGC	4 cut(s)	513, 657, 696, 699
HaeIII	GGCC	3 cut(s)	378, 458, 980
HapII	CCGG	5 cut(s)	146, 261, 459, 1019, 1148
Hin1II	CATG	3 cut(s)	26, 211, 794
HindIII	AAGCTT	1 cut(s)	962
HinfI	GANTC	7 cut(s)	211, 227, 333, 737, 745, 799, 843
HpaII	CCGG	5 cut(s)	146, 261, 459, 1019, 1148
HphI	GGTGA	4 cut(s)	425, 890, 961, 1058
Hpy166II	GTNNAC	1 cut(s)	539
Hpy188I	TCNGA	4 cut(s)	338, 664, 721, 1256
Hpy188III	TCNNGA	6 cut(s)	29, 208, 277, 931, 997, 1148
Hpy8I	GTNNAC	1 cut(s)	539
HpyAV	CCTTC	4 cut(s)	47, 168, 586, 659
HpyCH4III	ACNGT	4 cut(s)	329, 394, 679, 1108
HpyCH4IV	ACGT	2 cut(s)	250, 816
HpyCH4V	TGCA	7 cut(s)	357, 608, 794, 890, 1037, 1113, 1160
HpyF10VI	GCNNNNNNNGC	1 cut(s)	692
HpyF3I	CTNAG	4 cut(s)	487, 494, 562, 755
HpySE526I	ACGT	2 cut(s)	250, 816
Hsp92II	CATG	3 cut(s)	26, 211, 794
Kpn2I	TCCGGA	1 cut(s)	1147
Kzo9I	GATC	3 cut(s)	86, 668, 688
LmnI	GCTCC	3 cut(s)	31, 548, 1196
Lsp1109I	GCAGC	3 cut(s)	524, 682, 685
LweI	GCATC	1 cut(s)	376
MaeI	CTAG	3 cut(s)	243, 875, 899
MaeII	ACGT	2 cut(s)	250, 816
MaeIII	GTNAC	1 cut(s)	263
MalI	GATC	3 cut(s)	88, 670, 690
MboI	GATC	3 cut(s)	86, 668, 688
MboII	GAAGA	2 cut(s)	660, 1165
MfeI	CAATTG	2 cut(s)	189, 360
MflI	RGATCY	2 cut(s)	86, 668
MhlI	GDGCHC	2 cut(s)	434, 481
MluCI	AATT	7 cut(s)	81, 189, 360, 712, 913, 1168, 1209
MnlI	CCTC	6 cut(s)	395, 496, 818, 927, 1022, 1187
Mph1103I	ATGCAT	2 cut(s)	610, 1162
MroI	TCCGGA	1 cut(s)	1147
MroXI	GAANNNNTTC	2 cut(s)	36, 803
MseI	TTAA	3 cut(s)	396, 636, 1088
MspA1I	CMGCKG	1 cut(s)	946
MspI	CCGG	5 cut(s)	146, 261, 459, 1019, 1148
MspR9I	CCNGG	2 cut(s)	146, 840
MunI	CAATTG	2 cut(s)	189, 360
Mva1269I	GAATGC	2 cut(s)	1022, 1162
MvaI	CCWGG	1 cut(s)	840
MvnI	CGCG	1 cut(s)	225
MwoI	GCNNNNNNNGC	1 cut(s)	692
NciI	CCSGG	1 cut(s)	146
NdeI	CATATG	1 cut(s)	610
NdeII	GATC	3 cut(s)	86, 668, 688
NlaIII	CATG	3 cut(s)	26, 211, 794
NlaIV	GGNNCC	1 cut(s)	1146
NsiI	ATGCAT	2 cut(s)	610, 1162
PagI	TCATGA	1 cut(s)	207
PcsI	WCGNNNNNNNCGW	1 cut(s)	222
PctI	GAATGC	2 cut(s)	1022, 1162
PdmI	GAANNNNTTC	2 cut(s)	36, 803
PfeI	GAWTC	7 cut(s)	211, 227, 333, 737, 745, 799, 843
PfoI	TCCNGGA	2 cut(s)	144, 838
PinAI	ACCGGT	1 cut(s)	260
PkrI	GCNGC	4 cut(s)	514, 658, 697, 700
Psp6I	CCWGG	1 cut(s)	838
PspGI	CCWGG	1 cut(s)	838
PspN4I	GGNNCC	1 cut(s)	1146
PspPI	GGNCC	2 cut(s)	979, 1145
PsuI	RGATCY	2 cut(s)	86, 668
RsaI	GTAC	3 cut(s)	241, 938, 1139
RsaNI	GTAC	3 cut(s)	240, 937, 1138
SaqAI	TTAA	3 cut(s)	396, 636, 1088
SatI	GCNGC	4 cut(s)	513, 657, 696, 699
Sau3AI	GATC	3 cut(s)	86, 668, 688
Sau96I	GGNCC	2 cut(s)	979, 1145
ScaI	AGTACT	1 cut(s)	241
ScrFI	CCNGG	2 cut(s)	146, 840
SduI	GDGCHC	2 cut(s)	434, 481
SetI	ASST	8 cut(s)	39, 253, 488, 578, 819, 880, 938, 966
SfaNI	GCATC	1 cut(s)	376
SfcI	CTRYAG	1 cut(s)	1122
SinI	GGWCC	1 cut(s)	1145
SmlI	CTYRAG	1 cut(s)	965
SmoI	CTYRAG	1 cut(s)	965
Sse9I	AATT	7 cut(s)	81, 189, 360, 712, 913, 1168, 1209
SsiI	CCGC	6 cut(s)	5, 223, 383, 657, 944, 992
SspMI	CTAG	3 cut(s)	243, 875, 899
StyD4I	CCNGG	2 cut(s)	144, 838
StyI	CCWWGG	1 cut(s)	196
TaaI	ACNGT	4 cut(s)	329, 394, 679, 1108
TaiI	ACGT	2 cut(s)	253, 819
TaqI	TCGA	1 cut(s)	230
TasI	AATT	7 cut(s)	81, 189, 360, 712, 913, 1168, 1209
TatI	WGTACW	1 cut(s)	239
TauI	GCSGC	1 cut(s)	659
TfiI	GAWTC	7 cut(s)	211, 227, 333, 737, 745, 799, 843
Tru1I	TTAA	3 cut(s)	396, 636, 1088
Tru9I	TTAA	3 cut(s)	396, 636, 1088
TscAI	CASTG	4 cut(s)	495, 801, 1039, 1111
TseI	GCWGC	3 cut(s)	512, 695, 698
TspDTI	ATGAA	1 cut(s)	568
TspGWI	ACGGA	1 cut(s)	885
TspRI	CASTG	4 cut(s)	495, 801, 1039, 1111
VpaK11BI	GGWCC	1 cut(s)	1145
XapI	RAATTY	3 cut(s)	712, 1168, 1209
XmnI	GAANNNNTTC	2 cut(s)	36, 803
XspI	CTAG	3 cut(s)	243, 875, 899
ZrmI	AGTACT	1 cut(s)	241
Zsp2I	ATGCAT	2 cut(s)	610, 1162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.