Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001163

Physical Location & Seq

Genomic Coordinates Forward (+)

7419583 .. 7421915

Gene Structure 2333 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ16750

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1224 bp

ATGAATTTGAGGGATGATGGACGATATAAAGCTATAGCAGTTTGTTGGGTTCTTGGACTAGGAACCCTATTTGCATGGAACAGTGTGGTCACTATAGGGGATTACTATTACACCTTGTTTCCGAAATACCATCCTTCGCGGGTTCTTACCCTGGTTTATCAACCATTTGCACTTATAGCAATGGCAGCACTAGCTTACAATGAAGCAAAGGTTAATACCCGAAAGCGGATCTTAGCTGGATACACAATCTTCTTCCTTGGTACCTTGATGCTAATTGTTGTGGATTTAGCTACGTCTGGTAGTGGAGGAATTGGACCTTATATTGGGATATGTGCCATTAATGGTGCATTAGGGGTTGCAGGTGCCCATGTCGAAGGTGGGATCGTTGGCGACCTATCTTTCATGTGCCCTGAATTCATCCAGTCTTTCTTATCTGGATTGGCTGCAGCTGGTGCTTTAACCTCAGTCTTGAGGCTGATAACCAAGGCGGTCTTTGATAAATACAACAATGGTTTTCGCAAGGGGGCGATGCTATTCCTGTCAATTTCCACATTCATTCAGTTTGTGTGTATTCTTCTATATGCAATTTACTTCCCTAGATTGCCTATAGTAAAGTACTACCGCTCAAAAGCAGCCTCGGAAGGCTCTAAAACTGTATCAGCTGATCTTGCAACTGCTGGAATCCAAACAAAAGCAGACATTGAAGTCCAGAACGGTGCTGCTCTTCCACAAAGATTGAGAAATAAGCAATTGTTCAATCAGAATTTAGATTATGGACTTGGCTTGTTATTGACATATGCTCTGACATTATCAATATTCCCTGGTTTCCTATATGAAAACACTCAAAACCACAAGCTCGGCTCATGGTATCCGCTTGTTCTGATCGCAGTGTACAATGCGGCGGATTTAACATCGAGGTACATACCTCTTGTGAAATGTCTGAAGATGGAATCAAGAAAGGGTCTAATGATTGCAATTCTATTGCGAATGCTTTTCGTGCCAGCATTCTATTTCACAGCAAAATATGGTGACCTGGGATGGATGATGATGCTCACATCACTCCTAGGATTTTCGAATGGCTACTTCACTGTTTGTGTCATGATAGTGGCACCCAAAGGTTACCAGGGATCTGAGCAGAATGCCTTGGGTAACTTGCTTGTACTGTGGCTTTTCTTCGGCGTATTTGCAGGGCTTTCCATTAACTGGTTATGGCTAGCTCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005337 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0015858 GO:0015931 GO:0015932 GO:0016020 GO:0022857 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:1901264 GO:1901505 GO:1901642

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nucleoside_tran

Protein Analysis

407

Amino Acids

44.82

Weight (kDa)

9.36

Isoelectric Point (pI)

26.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nucleoside_tran	PF01733	118 - 404	1.7e-31	Nucleoside transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001163)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61630 AT4G05110 AT4G05110 AT4G05110 AT4G05120 AT4G05120 AT4G05130 AT4G05140
fragaria_vesca	FvH4_3g03740 FvH4_3g03740 FvH4_3g03740 FvH4_3g03740 FvH4_3g03750 FvH4_5g10501
malus_domestica	MD05G1326900.v1.1 MD10G1305000.v1.1
prunus_persica	Prupe.4G034600_v2.0.a1
pyrus_communis	pycom05g30120 pycom10g25750
rosa_chinensis	RchiOBHm_Chr5g0005801 RchiOBHm_Chr5g0005811 RchiOBHm_Chr5g0005821 RchiOBHm_Chr7g0187631
rosa_laevigata	RLG00000004764 RLG00000031327 RLG00000031328 RLG00000031329
rosa_multiflora	Rmu_sc0002694.1_g000001
rosa_roxburghii	Rroxscaffold_1G00070040 Rroxscaffold_1G00070050 Rroxscaffold_1G00070060 Rroxscaffold_3G00267210
rosa_rugosa	Rorug04G0418200 Rorug04G0418300 Rorug04G0418400 Rorug04G0418500 Rorug04G0418500 Rorug04G0418600 Rorug04G0418700 Rorug06G0483300
rosa_samantha	Rh5AG045700 Rh5AG045800 Rh5AG045900 Rh5BG044400 Rh5BG044600 Rh5CG053200 Rh5CG053400 Rh5CG053500 Rh5DG044300 Rh7AG088200 Rh7BG089500 Rh7CG088800 Rh7DG090500
rosa_wichuraiana	Rw0G002660 Rw5G004600 Rw5G004610 Rw5G004620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	350
AasI	GACNNNNNNGTC	1 cut(s)	704
Acc36I	ACCTGC	1 cut(s)	350
Acc65I	GGTACC	1 cut(s)	260
AccB1I	GGYRCC	3 cut(s)	260, 362, 1108
AccB7I	CCANNNNNTGG	1 cut(s)	1203
AccBSI	CCGCTC	1 cut(s)	624
AccII	CGCG	1 cut(s)	139
AciI	CCGC	7 cut(s)	139, 226, 488, 622, 872, 899, 902
AclWI	GGATC	3 cut(s)	236, 389, 1135
AcsI	RAATTY	3 cut(s)	4, 413, 763
AcuI	CTGAAG	1 cut(s)	962
AfaI	GTAC	5 cut(s)	262, 617, 893, 920, 1161
AfiI	CCNNNNNNNGG	3 cut(s)	225, 323, 1203
AgsI	TTSAA	2 cut(s)	704, 757
AjnI	CCWGG	4 cut(s)	150, 820, 1032, 1122
AluBI	AGCT	8 cut(s)	32, 194, 236, 290, 449, 662, 856, 1217
AluI	AGCT	8 cut(s)	32, 194, 236, 290, 449, 662, 856, 1217
AlwI	GGATC	3 cut(s)	236, 389, 1135
ApeKI	GCWGC	5 cut(s)	185, 443, 446, 632, 719
ApoI	RAATTY	3 cut(s)	4, 413, 763
AseI	ATTAAT	1 cut(s)	339
Asp718I	GGTACC	1 cut(s)	260
AspA2I	CCTAGG	1 cut(s)	1063
AspS9I	GGNCC	1 cut(s)	314
AsuHPI	GGTGA	1 cut(s)	1040
AsuII	TTCGAA	1 cut(s)	1073
AsuNHI	GCTAGC	1 cut(s)	1213
AvaII	GGWCC	1 cut(s)	314
AvrII	CCTAGG	1 cut(s)	1063
BaeGI	GKGCMC	2 cut(s)	367, 410
BanI	GGYRCC	3 cut(s)	260, 362, 1108
BbvI	GCAGC	5 cut(s)	197, 430, 458, 644, 706
BccI	CCATC	4 cut(s)	11, 138, 940, 1032
BciT130I	CCWGG	4 cut(s)	152, 822, 1034, 1124
BciVI	GTATCC	2 cut(s)	233, 879
BfaI	CTAG	5 cut(s)	59, 191, 597, 1064, 1214
BfmI	CTRYAG	4 cut(s)	33, 93, 444, 606
BfuAI	ACCTGC	1 cut(s)	350
BfuI	GTATCC	2 cut(s)	233, 879
BisI	GCNGC	6 cut(s)	186, 444, 447, 633, 720, 900
BlnI	CCTAGG	1 cut(s)	1063
BlsI	GCNGC	6 cut(s)	187, 445, 448, 634, 721, 901
BmcAI	AGTACT	1 cut(s)	617
Bme1390I	CCNGG	4 cut(s)	152, 822, 1034, 1124
Bme18I	GGWCC	1 cut(s)	314
BmgT120I	GGNCC	1 cut(s)	314
BmiI	GGNNCC	4 cut(s)	64, 262, 364, 1110
BmrFI	CCNGG	4 cut(s)	152, 822, 1034, 1124
BmsI	GCATC	3 cut(s)	258, 519, 1038
BmtI	GCTAGC	1 cut(s)	1217
Bpu14I	TTCGAA	1 cut(s)	1073
BpuEI	CTTGAG	1 cut(s)	490
BsaJI	CCNNGG	9 cut(s)	150, 256, 483, 636, 820, 1033, 1063, 1123, 1143
Bsc4I	CCNNNNNNNGG	3 cut(s)	225, 323, 1203
Bse1I	ACTGG	2 cut(s)	421, 1208
Bse3DI	GCAATG	1 cut(s)	186
BseBI	CCWGG	4 cut(s)	152, 822, 1034, 1124
BseDI	CCNNGG	9 cut(s)	150, 256, 483, 636, 820, 1033, 1063, 1123, 1143
BseGI	GGATG	5 cut(s)	19, 130, 417, 1043, 1047
BseLI	CCNNNNNNNGG	3 cut(s)	225, 323, 1203
BseMI	GCAATG	1 cut(s)	186
BseMII	CTCAG	2 cut(s)	477, 1122
BseNI	ACTGG	2 cut(s)	421, 1208
BseSI	GKGCMC	2 cut(s)	367, 410
BseXI	GCAGC	5 cut(s)	197, 430, 458, 644, 706
Bsh1236I	CGCG	1 cut(s)	139
BshNI	GGYRCC	3 cut(s)	260, 362, 1108
BslI	CCNNNNNNNGG	3 cut(s)	225, 323, 1203
BsmI	GAATGC	3 cut(s)	993, 1004, 1144
Bsp119I	TTCGAA	1 cut(s)	1073
Bsp1286I	GDGCHC	2 cut(s)	367, 410
Bsp1407I	TGTACA	1 cut(s)	891
Bsp143I	GATC	5 cut(s)	228, 381, 664, 882, 1127
BspACI	CCGC	7 cut(s)	139, 226, 488, 622, 872, 899, 902
BspCNI	CTCAG	2 cut(s)	476, 1123
BspFNI	CGCG	1 cut(s)	139
BspHI	TCATGA	1 cut(s)	1098
BspLI	GGNNCC	4 cut(s)	64, 262, 364, 1110
BspMAI	CTGCAG	1 cut(s)	448
BspMI	ACCTGC	1 cut(s)	350
BspOI	GCTAGC	1 cut(s)	1217
BspPI	GGATC	3 cut(s)	236, 389, 1135
BspQI	GCTCTTC	1 cut(s)	729
BspT104I	TTCGAA	1 cut(s)	1073
BspT107I	GGYRCC	3 cut(s)	260, 362, 1108
BsrBI	CCGCTC	1 cut(s)	624
BsrDI	GCAATG	1 cut(s)	186
BsrGI	TGTACA	1 cut(s)	891
BsrI	ACTGG	2 cut(s)	421, 1208
BssECI	CCNNGG	9 cut(s)	150, 256, 483, 636, 820, 1033, 1063, 1123, 1143
BssMI	GATC	5 cut(s)	228, 381, 664, 882, 1127
BssT1I	CCWWGG	4 cut(s)	256, 483, 1063, 1143
Bst2UI	CCWGG	4 cut(s)	152, 822, 1034, 1124
Bst4CI	ACNGT	5 cut(s)	83, 655, 716, 1090, 1164
Bst6I	CTCTTC	1 cut(s)	729
BstAPI	GCANNNNNTGC	1 cut(s)	452
BstAUI	TGTACA	1 cut(s)	891
BstBI	TTCGAA	1 cut(s)	1073
BstC8I	GCNNGC	2 cut(s)	1002, 1215
BstDEI	CTNAG	3 cut(s)	232, 463, 1131
BstEII	GGTNACC	2 cut(s)	1028, 1118
BstF5I	GGATG	5 cut(s)	19, 130, 417, 1043, 1047
BstFNI	CGCG	1 cut(s)	139
BstKTI	GATC	5 cut(s)	231, 384, 667, 885, 1130
BstMBI	GATC	5 cut(s)	228, 381, 664, 882, 1127
BstMWI	GCNNNNNNNGC	6 cut(s)	176, 185, 191, 452, 668, 997
BstNI	CCWGG	4 cut(s)	152, 822, 1034, 1124
BstPI	GGTNACC	2 cut(s)	1028, 1118
BstSCI	CCNGG	4 cut(s)	150, 820, 1032, 1122
BstSFI	CTRYAG	4 cut(s)	33, 93, 444, 606
BstSLI	GKGCMC	2 cut(s)	367, 410
BstUI	CGCG	1 cut(s)	139
BstV1I	GCAGC	5 cut(s)	197, 430, 458, 644, 706
BstX2I	RGATCY	2 cut(s)	228, 1127
BstYI	RGATCY	2 cut(s)	228, 1127
BsuI	GTATCC	2 cut(s)	233, 879
BtgZI	GCGATG	1 cut(s)	542
BtsCI	GGATG	5 cut(s)	19, 130, 417, 1043, 1047
BtsI	GCAGTG	1 cut(s)	894
BtsIMutI	CAGTG	3 cut(s)	88, 894, 1086
BveI	ACCTGC	1 cut(s)	350
Cac8I	GCNNGC	2 cut(s)	1002, 1215
CciI	TCATGA	1 cut(s)	1098
Cfr13I	GGNCC	1 cut(s)	314
Csp6I	GTAC	5 cut(s)	261, 616, 892, 919, 1160
CspCI	CAANNNNNGTGG	2 cut(s)	717, 752
CviAII	CATG	5 cut(s)	75, 368, 403, 864, 1099
CviQI	GTAC	5 cut(s)	261, 616, 892, 919, 1160
DdeI	CTNAG	3 cut(s)	232, 463, 1131
DpnI	GATC	5 cut(s)	230, 383, 666, 884, 1129
DpnII	GATC	5 cut(s)	228, 381, 664, 882, 1127
DrdI	GACNNNNNNGTC	1 cut(s)	704
DseDI	GACNNNNNNGTC	1 cut(s)	704
Eam1104I	CTCTTC	1 cut(s)	729
EarI	CTCTTC	1 cut(s)	729
EciI	GGCGGA	1 cut(s)	917
Eco130I	CCWWGG	4 cut(s)	256, 483, 1063, 1143
Eco47I	GGWCC	1 cut(s)	314
Eco57I	CTGAAG	1 cut(s)	962
Eco91I	GGTNACC	2 cut(s)	1028, 1118
EcoO65I	GGTNACC	2 cut(s)	1028, 1118
EcoRI	GAATTC	1 cut(s)	413
EcoRII	CCWGG	4 cut(s)	150, 820, 1032, 1122
EcoT14I	CCWWGG	4 cut(s)	256, 483, 1063, 1143
ErhI	CCWWGG	4 cut(s)	256, 483, 1063, 1143
FaeI	CATG	5 cut(s)	78, 371, 406, 867, 1102
FalI	AAGNNNNNCTT	4 cut(s)	215, 247, 476, 508
FatI	CATG	5 cut(s)	74, 367, 402, 863, 1098
FauI	CCCGC	1 cut(s)	132
FauNDI	CATATG	1 cut(s)	796
Fnu4HI	GCNGC	6 cut(s)	186, 444, 447, 633, 720, 900
FokI	GGATG	5 cut(s)	26, 117, 404, 1050, 1054
Fsp4HI	GCNGC	6 cut(s)	186, 444, 447, 633, 720, 900
FspBI	CTAG	5 cut(s)	59, 191, 597, 1064, 1214
GluI	GCNGC	6 cut(s)	186, 444, 447, 633, 720, 900
Hin1II	CATG	5 cut(s)	78, 371, 406, 867, 1102
HinfI	GANTC	2 cut(s)	681, 950
HphI	GGTGA	1 cut(s)	1040
Hpy166II	GTNNAC	1 cut(s)	892
Hpy188I	TCNGA	7 cut(s)	123, 640, 762, 804, 882, 942, 1132
Hpy188III	TCNNGA	5 cut(s)	435, 469, 709, 954, 1099
Hpy8I	GTNNAC	1 cut(s)	892
HpyAV	CCTTC	3 cut(s)	144, 368, 635
HpyCH4III	ACNGT	5 cut(s)	83, 655, 716, 1090, 1164
HpyCH4IV	ACGT	1 cut(s)	293
HpyCH4V	TGCA	9 cut(s)	74, 170, 347, 359, 446, 584, 671, 974, 1187
HpyF10VI	GCNNNNNNNGC	6 cut(s)	176, 185, 191, 452, 668, 997
HpyF3I	CTNAG	3 cut(s)	232, 463, 1131
HpySE526I	ACGT	1 cut(s)	293
Hsp92II	CATG	5 cut(s)	78, 371, 406, 867, 1102
KpnI	GGTACC	1 cut(s)	264
Kzo9I	GATC	5 cut(s)	228, 381, 664, 882, 1127
LguI	GCTCTTC	1 cut(s)	729
Lsp1109I	GCAGC	5 cut(s)	197, 430, 458, 644, 706
LweI	GCATC	3 cut(s)	258, 519, 1038
MaeI	CTAG	5 cut(s)	59, 191, 597, 1064, 1214
MaeII	ACGT	1 cut(s)	293
MaeIII	GTNAC	4 cut(s)	88, 1028, 1118, 1148
MalI	GATC	5 cut(s)	230, 383, 666, 884, 1129
MbiI	CCGCTC	1 cut(s)	624
MboI	GATC	5 cut(s)	228, 381, 664, 882, 1127
MboII	GAAGA	6 cut(s)	241, 244, 566, 716, 955, 1165
MfeI	CAATTG	1 cut(s)	749
MflI	RGATCY	2 cut(s)	228, 1127
MhlI	GDGCHC	2 cut(s)	367, 410
MluCI	AATT	9 cut(s)	4, 273, 309, 413, 543, 585, 749, 763, 975
MnlI	CCTC	7 cut(s)	3, 299, 465, 472, 646, 909, 936
MseI	TTAA	5 cut(s)	213, 339, 458, 908, 1200
MslI	CAYNNNNRTG	1 cut(s)	1103
MspA1I	CMGCKG	2 cut(s)	449, 662
MspR9I	CCNGG	4 cut(s)	152, 822, 1034, 1124
MunI	CAATTG	1 cut(s)	749
Mva1269I	GAATGC	3 cut(s)	993, 1004, 1144
MvaI	CCWGG	4 cut(s)	152, 822, 1034, 1124
MvnI	CGCG	1 cut(s)	139
MwoI	GCNNNNNNNGC	6 cut(s)	176, 185, 191, 452, 668, 997
NdeI	CATATG	1 cut(s)	796
NdeII	GATC	5 cut(s)	228, 381, 664, 882, 1127
NheI	GCTAGC	1 cut(s)	1213
NlaIII	CATG	5 cut(s)	78, 371, 406, 867, 1102
NlaIV	GGNNCC	4 cut(s)	64, 262, 364, 1110
NmeAIII	GCCGAG	1 cut(s)	837
NmuCI	GTSAC	2 cut(s)	88, 1028
NspV	TTCGAA	1 cut(s)	1073
PagI	TCATGA	1 cut(s)	1098
PaqCI	CACCTGC	1 cut(s)	350
PciSI	GCTCTTC	1 cut(s)	729
PctI	GAATGC	3 cut(s)	993, 1004, 1144
PfeI	GAWTC	2 cut(s)	681, 950
PflMI	CCANNNNNTGG	1 cut(s)	1203
PkrI	GCNGC	6 cut(s)	187, 445, 448, 634, 721, 901
PshBI	ATTAAT	1 cut(s)	339
Psp6I	CCWGG	4 cut(s)	150, 820, 1032, 1122
PspEI	GGTNACC	2 cut(s)	1028, 1118
PspGI	CCWGG	4 cut(s)	150, 820, 1032, 1122
PspN4I	GGNNCC	4 cut(s)	64, 262, 364, 1110
PspPI	GGNCC	1 cut(s)	314
PstI	CTGCAG	1 cut(s)	448
PsuI	RGATCY	2 cut(s)	228, 1127
PvuII	CAGCTG	2 cut(s)	449, 662
RsaI	GTAC	5 cut(s)	262, 617, 893, 920, 1161
RsaNI	GTAC	5 cut(s)	261, 616, 892, 919, 1160
RseI	CAYNNNNRTG	1 cut(s)	1103
SapI	GCTCTTC	1 cut(s)	729
SaqAI	TTAA	5 cut(s)	213, 339, 458, 908, 1200
SatI	GCNGC	6 cut(s)	186, 444, 447, 633, 720, 900
Sau3AI	GATC	5 cut(s)	228, 381, 664, 882, 1127
Sau96I	GGNCC	1 cut(s)	314
ScaI	AGTACT	1 cut(s)	617
ScrFI	CCNGG	4 cut(s)	152, 822, 1034, 1124
SduI	GDGCHC	2 cut(s)	367, 410
SfaNI	GCATC	3 cut(s)	258, 519, 1038
SfcI	CTRYAG	4 cut(s)	33, 93, 444, 606
SfuI	TTCGAA	1 cut(s)	1073
SinI	GGWCC	1 cut(s)	314
SmiMI	CAYNNNNRTG	1 cut(s)	1103
SmlI	CTYRAG	1 cut(s)	469
SmoI	CTYRAG	1 cut(s)	469
Sse9I	AATT	9 cut(s)	4, 273, 309, 413, 543, 585, 749, 763, 975
SsiI	CCGC	7 cut(s)	139, 226, 488, 622, 872, 899, 902
SspI	AATATT	1 cut(s)	816
SspMI	CTAG	5 cut(s)	59, 191, 597, 1064, 1214
StyD4I	CCNGG	4 cut(s)	150, 820, 1032, 1122
StyI	CCWWGG	4 cut(s)	256, 483, 1063, 1143
TaaI	ACNGT	5 cut(s)	83, 655, 716, 1090, 1164
TaiI	ACGT	1 cut(s)	296
TaqI	TCGA	3 cut(s)	372, 914, 1073
TasI	AATT	9 cut(s)	4, 273, 309, 413, 543, 585, 749, 763, 975
TatI	WGTACW	3 cut(s)	615, 891, 1159
TauI	GCSGC	1 cut(s)	902
TfiI	GAWTC	2 cut(s)	681, 950
Tru1I	TTAA	5 cut(s)	213, 339, 458, 908, 1200
Tru9I	TTAA	5 cut(s)	213, 339, 458, 908, 1200
TscAI	CASTG	3 cut(s)	88, 894, 1093
TseFI	GTSAC	2 cut(s)	88, 1028
TseI	GCWGC	5 cut(s)	185, 443, 446, 632, 719
Tsp45I	GTSAC	2 cut(s)	88, 1028
TspDTI	ATGAA	6 cut(s)	17, 216, 391, 406, 544, 849
TspRI	CASTG	3 cut(s)	88, 894, 1093
Van91I	CCANNNNNTGG	1 cut(s)	1203
VpaK11BI	GGWCC	1 cut(s)	314
VspI	ATTAAT	1 cut(s)	339
XapI	RAATTY	3 cut(s)	4, 413, 763
XcmI	CCANNNNNNNNNTGG	1 cut(s)	374
XmaJI	CCTAGG	1 cut(s)	1063
XspI	CTAG	5 cut(s)	59, 191, 597, 1064, 1214
ZrmI	AGTACT	1 cut(s)	617

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.