Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0001163

Physical Location & Seq

Genomic Coordinates Forward (+)

6632563 .. 6635008

Gene Structure 2446 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG089500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

ATGTCTAAGACTGTCCCTATTGAAATCCAGGGCGTTGCCATAACCGAAATTAGTGAAAGCAAGACTCCACCGAGGCTTGAGAAATACCATCCTTCGCGGGTTCTTACCCTGGTTTATCAACCATTTGCACTTATAGCAATGGCAGCACTAGCTTACAATGAAGCAAAGGTTAATACCCGAAAGCGGATCTTAGCTGGATACACTATCTTCTTCCTTGGTACCTTGATGCTAACTGTTGTGGATTTAGCTACGTCTGGTAGTGGAGGAATTGGACCTTATATTGGGATATGTGCCATTAATGGTGCATTAGGGGTTGCAGGTGCCCATGTCGAAGGTGGGATCGTTGGCGACCTATCTTTCATGTGCCCTGAATTCATCCAGTCTTTCTTATCTGGATTGGCTGCAGCTGGTGCTTTAACCTCAGTCTTGAGGCTGATAACCAAGGCGGTCTTTGATAAATACAACAATGGTCTTCGCAAGGGGGCGATGCTATTCCTGTCAATTTCCACATTCATTCAGTTCGTGTGTATTCTTCTATATGCAATTTACTTCCCTAGATTGCCTATAGTAAAGTACTACCGCTCAAAAGCGGCCTCGGAAGGCTCTAGAACTGTATCAGCTGATCTTGCAACTGCTGGAATCCAAACAAAAGCAGACATTGAAGTCCAGAACGATGCTGCTCTTCCACAACGATTGAGCAATAAGCAATTGTTCAATCAGAATTTAGATTATGGACTTGGCTTGTTTTTGACATATATATGCTCTGACATTATCAATATTCCCTGGTATCCGCTTGTTCTGATCGCAGTGTACAATGCGGTGGATTTAACATCGAGGTACATACCTCTTGTGAAATGTCTGAAGATGGAATCAAGAAAGGGTCTAATGATTGCAATTCTATTGCGAATGCTCTTCGTGCCAGCATTCTATTTCACAGCAAAATATGGTGACCTGGGATGGATGATGATGCTCACATCACTCCTAGGATTTTCGAATGGCTACTTCACTGTTTGTGTCATGATAGTGGCACCCAAAGGTTACCAGGGATCTGAGCAGAATGCCTTGGGTAACTTGCTTGTACTGTGGCTTTTCTTCGGCGTATTTGCAGGGCTTTCCATTAACTGGTTATGGCTAGCTCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005337 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0015858 GO:0015931 GO:0015932 GO:0016020 GO:0022857 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:1901264 GO:1901505 GO:1901642

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nucleoside_tran

Protein Analysis

380

Amino Acids

41.64

Weight (kDa)

9.15

Isoelectric Point (pI)

32.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nucleoside_tran	PF01733	104 - 377	1.4e-24	Nucleoside transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001163)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61630 AT4G05110 AT4G05110 AT4G05110 AT4G05120 AT4G05120 AT4G05130 AT4G05140
fragaria_vesca	FvH4_3g03740 FvH4_3g03740 FvH4_3g03740 FvH4_3g03740 FvH4_3g03750 FvH4_5g10501
malus_domestica	MD05G1326900.v1.1 MD10G1305000.v1.1
prunus_persica	Prupe.4G034600_v2.0.a1
pyrus_communis	pycom05g30120 pycom10g25750
rosa_chinensis	RchiOBHm_Chr5g0005801 RchiOBHm_Chr5g0005811 RchiOBHm_Chr5g0005821 RchiOBHm_Chr7g0187631
rosa_laevigata	RLG00000004764 RLG00000031327 RLG00000031328 RLG00000031329
rosa_multiflora	Rmu_sc0002694.1_g000001
rosa_roxburghii	Rroxscaffold_1G00070040 Rroxscaffold_1G00070050 Rroxscaffold_1G00070060 Rroxscaffold_3G00267210
rosa_rugosa	Rorug04G0418200 Rorug04G0418300 Rorug04G0418400 Rorug04G0418500 Rorug04G0418500 Rorug04G0418600 Rorug04G0418700 Rorug06G0483300
rosa_samantha	Rh5AG045700 Rh5AG045800 Rh5AG045900 Rh5BG044400 Rh5BG044600 Rh5CG053200 Rh5CG053400 Rh5CG053500 Rh5DG044300 Rh7AG088200 Rh7BG089500 Rh7CG088800 Rh7DG090500
rosa_wichuraiana	Rw0G002660 Rw5G004600 Rw5G004610 Rw5G004620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	308
AasI	GACNNNNNNGTC	1 cut(s)	662
Acc36I	ACCTGC	1 cut(s)	308
Acc65I	GGTACC	1 cut(s)	218
AccB1I	GGYRCC	3 cut(s)	218, 320, 1027
AccB7I	CCANNNNNTGG	1 cut(s)	1122
AccBSI	CCGCTC	1 cut(s)	582
AccII	CGCG	1 cut(s)	97
AciI	CCGC	7 cut(s)	97, 184, 446, 580, 590, 791, 818
AclWI	GGATC	3 cut(s)	194, 347, 1054
AcsI	RAATTY	2 cut(s)	371, 721
AcuI	CTGAAG	1 cut(s)	881
AfaI	GTAC	5 cut(s)	220, 575, 812, 839, 1080
AfiI	CCNNNNNNNGG	3 cut(s)	183, 281, 1122
AgsI	TTSAA	3 cut(s)	23, 662, 715
AjnI	CCWGG	5 cut(s)	27, 108, 782, 951, 1041
AluBI	AGCT	6 cut(s)	152, 194, 248, 407, 620, 1136
AluI	AGCT	6 cut(s)	152, 194, 248, 407, 620, 1136
AlwI	GGATC	3 cut(s)	194, 347, 1054
AoxI	GGCC	1 cut(s)	591
ApeKI	GCWGC	4 cut(s)	143, 401, 404, 677
ApoI	RAATTY	2 cut(s)	371, 721
AseI	ATTAAT	1 cut(s)	297
Asp718I	GGTACC	1 cut(s)	218
AspA2I	CCTAGG	1 cut(s)	982
AspS9I	GGNCC	1 cut(s)	272
AsuHPI	GGTGA	1 cut(s)	959
AsuII	TTCGAA	1 cut(s)	992
AsuNHI	GCTAGC	1 cut(s)	1132
AvaII	GGWCC	1 cut(s)	272
AvrII	CCTAGG	1 cut(s)	982
BaeGI	GKGCMC	2 cut(s)	325, 368
BanI	GGYRCC	3 cut(s)	218, 320, 1027
BbsI	GAAGAC	1 cut(s)	464
BbvI	GCAGC	4 cut(s)	155, 388, 416, 664
BccI	CCATC	3 cut(s)	96, 859, 951
BciT130I	CCWGG	5 cut(s)	29, 110, 784, 953, 1043
BciVI	GTATCC	2 cut(s)	191, 798
BfaI	CTAG	5 cut(s)	149, 555, 606, 983, 1133
BfmI	CTRYAG	2 cut(s)	402, 564
BfuAI	ACCTGC	1 cut(s)	308
BfuI	GTATCC	2 cut(s)	191, 798
BisI	GCNGC	5 cut(s)	144, 402, 405, 591, 678
BlnI	CCTAGG	1 cut(s)	982
BlsI	GCNGC	5 cut(s)	145, 403, 406, 592, 679
BmcAI	AGTACT	1 cut(s)	575
Bme1390I	CCNGG	5 cut(s)	29, 110, 784, 953, 1043
Bme18I	GGWCC	1 cut(s)	272
BmgT120I	GGNCC	1 cut(s)	272
BmiI	GGNNCC	3 cut(s)	220, 322, 1029
BmrFI	CCNGG	5 cut(s)	29, 110, 784, 953, 1043
BmsI	GCATC	4 cut(s)	216, 477, 664, 957
BmtI	GCTAGC	1 cut(s)	1136
BpiI	GAAGAC	1 cut(s)	464
Bpu14I	TTCGAA	1 cut(s)	992
BpuEI	CTTGAG	2 cut(s)	98, 448
Bsc4I	CCNNNNNNNGG	3 cut(s)	183, 281, 1122
Bse1I	ACTGG	2 cut(s)	379, 1127
Bse3DI	GCAATG	1 cut(s)	144
BseBI	CCWGG	5 cut(s)	29, 110, 784, 953, 1043
BseGI	GGATG	4 cut(s)	88, 375, 962, 966
BseLI	CCNNNNNNNGG	3 cut(s)	183, 281, 1122
BseMI	GCAATG	1 cut(s)	144
BseMII	CTCAG	2 cut(s)	435, 1041
BseNI	ACTGG	2 cut(s)	379, 1127
BseSI	GKGCMC	2 cut(s)	325, 368
BseXI	GCAGC	4 cut(s)	155, 388, 416, 664
Bsh1236I	CGCG	1 cut(s)	97
BshFI	GGCC	1 cut(s)	593
BshNI	GGYRCC	3 cut(s)	218, 320, 1027
BslI	CCNNNNNNNGG	3 cut(s)	183, 281, 1122
BsmI	GAATGC	3 cut(s)	912, 923, 1063
BsnI	GGCC	1 cut(s)	593
Bsp119I	TTCGAA	1 cut(s)	992
Bsp1286I	GDGCHC	2 cut(s)	325, 368
Bsp1407I	TGTACA	1 cut(s)	810
Bsp143I	GATC	5 cut(s)	186, 339, 622, 801, 1046
BspACI	CCGC	7 cut(s)	97, 184, 446, 580, 590, 791, 818
BspANI	GGCC	1 cut(s)	593
BspCNI	CTCAG	2 cut(s)	434, 1042
BspFNI	CGCG	1 cut(s)	97
BspHI	TCATGA	1 cut(s)	1017
BspLI	GGNNCC	3 cut(s)	220, 322, 1029
BspMAI	CTGCAG	1 cut(s)	406
BspMI	ACCTGC	1 cut(s)	308
BspOI	GCTAGC	1 cut(s)	1136
BspPI	GGATC	3 cut(s)	194, 347, 1054
BspQI	GCTCTTC	2 cut(s)	687, 917
BspT104I	TTCGAA	1 cut(s)	992
BspT107I	GGYRCC	3 cut(s)	218, 320, 1027
BsrBI	CCGCTC	1 cut(s)	582
BsrDI	GCAATG	1 cut(s)	144
BsrGI	TGTACA	1 cut(s)	810
BsrI	ACTGG	2 cut(s)	379, 1127
BssMI	GATC	5 cut(s)	186, 339, 622, 801, 1046
BssT1I	CCWWGG	4 cut(s)	214, 441, 982, 1062
Bst2UI	CCWGG	5 cut(s)	29, 110, 784, 953, 1043
Bst4CI	ACNGT	5 cut(s)	13, 235, 613, 1009, 1083
Bst6I	CTCTTC	2 cut(s)	687, 917
BstAPI	GCANNNNNTGC	1 cut(s)	410
BstAUI	TGTACA	1 cut(s)	810
BstBI	TTCGAA	1 cut(s)	992
BstC8I	GCNNGC	2 cut(s)	921, 1134
BstDEI	CTNAG	4 cut(s)	6, 190, 421, 1050
BstEII	GGTNACC	2 cut(s)	947, 1037
BstF5I	GGATG	4 cut(s)	88, 375, 962, 966
BstFNI	CGCG	1 cut(s)	97
BstKTI	GATC	5 cut(s)	189, 342, 625, 804, 1049
BstMBI	GATC	5 cut(s)	186, 339, 622, 801, 1046
BstMWI	GCNNNNNNNGC	6 cut(s)	134, 143, 149, 410, 626, 916
BstNI	CCWGG	5 cut(s)	29, 110, 784, 953, 1043
BstPI	GGTNACC	2 cut(s)	947, 1037
BstSCI	CCNGG	5 cut(s)	27, 108, 782, 951, 1041
BstSFI	CTRYAG	2 cut(s)	402, 564
BstSLI	GKGCMC	2 cut(s)	325, 368
BstUI	CGCG	1 cut(s)	97
BstV1I	GCAGC	4 cut(s)	155, 388, 416, 664
BstV2I	GAAGAC	1 cut(s)	464
BstX2I	RGATCY	2 cut(s)	186, 1046
BstYI	RGATCY	2 cut(s)	186, 1046
BsuI	GTATCC	2 cut(s)	191, 798
BsuRI	GGCC	1 cut(s)	593
BtgZI	GCGATG	1 cut(s)	500
BtsCI	GGATG	4 cut(s)	88, 375, 962, 966
BtsI	GCAGTG	1 cut(s)	813
BtsIMutI	CAGTG	2 cut(s)	813, 1005
BveI	ACCTGC	1 cut(s)	308
Cac8I	GCNNGC	2 cut(s)	921, 1134
CciI	TCATGA	1 cut(s)	1017
Cfr13I	GGNCC	1 cut(s)	272
Csp6I	GTAC	5 cut(s)	219, 574, 811, 838, 1079
CspCI	CAANNNNNGTGG	2 cut(s)	675, 710
CviAII	CATG	3 cut(s)	326, 361, 1018
CviQI	GTAC	5 cut(s)	219, 574, 811, 838, 1079
DdeI	CTNAG	4 cut(s)	6, 190, 421, 1050
DpnI	GATC	5 cut(s)	188, 341, 624, 803, 1048
DpnII	GATC	5 cut(s)	186, 339, 622, 801, 1046
DrdI	GACNNNNNNGTC	1 cut(s)	662
DseDI	GACNNNNNNGTC	1 cut(s)	662
Eam1104I	CTCTTC	2 cut(s)	687, 917
EarI	CTCTTC	2 cut(s)	687, 917
Eco130I	CCWWGG	4 cut(s)	214, 441, 982, 1062
Eco47I	GGWCC	1 cut(s)	272
Eco57I	CTGAAG	1 cut(s)	881
Eco91I	GGTNACC	2 cut(s)	947, 1037
EcoO65I	GGTNACC	2 cut(s)	947, 1037
EcoRI	GAATTC	1 cut(s)	371
EcoRII	CCWGG	5 cut(s)	27, 108, 782, 951, 1041
EcoT14I	CCWWGG	4 cut(s)	214, 441, 982, 1062
ErhI	CCWWGG	4 cut(s)	214, 441, 982, 1062
FaeI	CATG	3 cut(s)	329, 364, 1021
FalI	AAGNNNNNCTT	4 cut(s)	173, 205, 434, 466
FatI	CATG	3 cut(s)	325, 360, 1017
FauI	CCCGC	1 cut(s)	90
Fnu4HI	GCNGC	5 cut(s)	144, 402, 405, 591, 678
FokI	GGATG	4 cut(s)	75, 362, 969, 973
Fsp4HI	GCNGC	5 cut(s)	144, 402, 405, 591, 678
FspBI	CTAG	5 cut(s)	149, 555, 606, 983, 1133
GluI	GCNGC	5 cut(s)	144, 402, 405, 591, 678
HaeIII	GGCC	1 cut(s)	593
Hin1II	CATG	3 cut(s)	329, 364, 1021
HinfI	GANTC	3 cut(s)	64, 639, 869
HphI	GGTGA	1 cut(s)	959
Hpy166II	GTNNAC	1 cut(s)	811
Hpy188I	TCNGA	6 cut(s)	598, 720, 766, 801, 861, 1051
Hpy188III	TCNNGA	6 cut(s)	393, 427, 606, 667, 873, 1018
Hpy8I	GTNNAC	1 cut(s)	811
HpyAV	CCTTC	3 cut(s)	102, 326, 593
HpyCH4III	ACNGT	5 cut(s)	13, 235, 613, 1009, 1083
HpyCH4IV	ACGT	1 cut(s)	251
HpyCH4V	TGCA	8 cut(s)	128, 305, 317, 404, 542, 629, 893, 1106
HpyF10VI	GCNNNNNNNGC	6 cut(s)	134, 143, 149, 410, 626, 916
HpyF3I	CTNAG	4 cut(s)	6, 190, 421, 1050
HpySE526I	ACGT	1 cut(s)	251
Hsp92II	CATG	3 cut(s)	329, 364, 1021
KpnI	GGTACC	1 cut(s)	222
Kzo9I	GATC	5 cut(s)	186, 339, 622, 801, 1046
LguI	GCTCTTC	2 cut(s)	687, 917
Lsp1109I	GCAGC	4 cut(s)	155, 388, 416, 664
LweI	GCATC	4 cut(s)	216, 477, 664, 957
MaeI	CTAG	5 cut(s)	149, 555, 606, 983, 1133
MaeII	ACGT	1 cut(s)	251
MaeIII	GTNAC	3 cut(s)	947, 1037, 1067
MalI	GATC	5 cut(s)	188, 341, 624, 803, 1048
MbiI	CCGCTC	1 cut(s)	582
MboI	GATC	5 cut(s)	186, 339, 622, 801, 1046
MboII	GAAGA	8 cut(s)	199, 202, 464, 524, 674, 874, 904, 1084
MfeI	CAATTG	1 cut(s)	707
MflI	RGATCY	2 cut(s)	186, 1046
MhlI	GDGCHC	2 cut(s)	325, 368
MluCI	AATT	8 cut(s)	48, 267, 371, 501, 543, 707, 721, 894
MlyI	GAGTC	1 cut(s)	58
MnlI	CCTC	7 cut(s)	66, 257, 423, 430, 604, 828, 855
MseI	TTAA	5 cut(s)	171, 297, 416, 827, 1119
MslI	CAYNNNNRTG	2 cut(s)	757, 1022
MspA1I	CMGCKG	2 cut(s)	407, 620
MspR9I	CCNGG	5 cut(s)	29, 110, 784, 953, 1043
MunI	CAATTG	1 cut(s)	707
Mva1269I	GAATGC	3 cut(s)	912, 923, 1063
MvaI	CCWGG	5 cut(s)	29, 110, 784, 953, 1043
MvnI	CGCG	1 cut(s)	97
MwoI	GCNNNNNNNGC	6 cut(s)	134, 143, 149, 410, 626, 916
NdeII	GATC	5 cut(s)	186, 339, 622, 801, 1046
NheI	GCTAGC	1 cut(s)	1132
NlaIII	CATG	3 cut(s)	329, 364, 1021
NlaIV	GGNNCC	3 cut(s)	220, 322, 1029
NmuCI	GTSAC	1 cut(s)	947
NspV	TTCGAA	1 cut(s)	992
PagI	TCATGA	1 cut(s)	1017
PaqCI	CACCTGC	1 cut(s)	308
PciSI	GCTCTTC	2 cut(s)	687, 917
PctI	GAATGC	3 cut(s)	912, 923, 1063
PfeI	GAWTC	2 cut(s)	639, 869
PflMI	CCANNNNNTGG	1 cut(s)	1122
PkrI	GCNGC	5 cut(s)	145, 403, 406, 592, 679
PleI	GAGTC	1 cut(s)	58
PpsI	GAGTC	1 cut(s)	58
PshBI	ATTAAT	1 cut(s)	297
Psp6I	CCWGG	5 cut(s)	27, 108, 782, 951, 1041
PspEI	GGTNACC	2 cut(s)	947, 1037
PspGI	CCWGG	5 cut(s)	27, 108, 782, 951, 1041
PspN4I	GGNNCC	3 cut(s)	220, 322, 1029
PspPI	GGNCC	1 cut(s)	272
PstI	CTGCAG	1 cut(s)	406
PsuI	RGATCY	2 cut(s)	186, 1046
PvuII	CAGCTG	2 cut(s)	407, 620
RsaI	GTAC	5 cut(s)	220, 575, 812, 839, 1080
RsaNI	GTAC	5 cut(s)	219, 574, 811, 838, 1079
RseI	CAYNNNNRTG	2 cut(s)	757, 1022
SapI	GCTCTTC	2 cut(s)	687, 917
SaqAI	TTAA	5 cut(s)	171, 297, 416, 827, 1119
SatI	GCNGC	5 cut(s)	144, 402, 405, 591, 678
Sau3AI	GATC	5 cut(s)	186, 339, 622, 801, 1046
Sau96I	GGNCC	1 cut(s)	272
ScaI	AGTACT	1 cut(s)	575
SchI	GAGTC	1 cut(s)	58
ScrFI	CCNGG	5 cut(s)	29, 110, 784, 953, 1043
SduI	GDGCHC	2 cut(s)	325, 368
SfaNI	GCATC	4 cut(s)	216, 477, 664, 957
SfcI	CTRYAG	2 cut(s)	402, 564
SfuI	TTCGAA	1 cut(s)	992
SinI	GGWCC	1 cut(s)	272
SmiMI	CAYNNNNRTG	2 cut(s)	757, 1022
SmlI	CTYRAG	2 cut(s)	77, 427
SmoI	CTYRAG	2 cut(s)	77, 427
Sse9I	AATT	8 cut(s)	48, 267, 371, 501, 543, 707, 721, 894
SsiI	CCGC	7 cut(s)	97, 184, 446, 580, 590, 791, 818
SspI	AATATT	1 cut(s)	778
SspMI	CTAG	5 cut(s)	149, 555, 606, 983, 1133
StyD4I	CCNGG	5 cut(s)	27, 108, 782, 951, 1041
StyI	CCWWGG	4 cut(s)	214, 441, 982, 1062
TaaI	ACNGT	5 cut(s)	13, 235, 613, 1009, 1083
TaiI	ACGT	1 cut(s)	254
TaqI	TCGA	3 cut(s)	330, 833, 992
TasI	AATT	8 cut(s)	48, 267, 371, 501, 543, 707, 721, 894
TatI	WGTACW	3 cut(s)	573, 810, 1078
TauI	GCSGC	1 cut(s)	593
TfiI	GAWTC	2 cut(s)	639, 869
Tru1I	TTAA	5 cut(s)	171, 297, 416, 827, 1119
Tru9I	TTAA	5 cut(s)	171, 297, 416, 827, 1119
TscAI	CASTG	2 cut(s)	813, 1012
TseFI	GTSAC	1 cut(s)	947
TseI	GCWGC	4 cut(s)	143, 401, 404, 677
Tsp45I	GTSAC	1 cut(s)	947
TspDTI	ATGAA	4 cut(s)	174, 349, 364, 502
TspRI	CASTG	2 cut(s)	813, 1012
Van91I	CCANNNNNTGG	1 cut(s)	1122
VpaK11BI	GGWCC	1 cut(s)	272
VspI	ATTAAT	1 cut(s)	297
XapI	RAATTY	2 cut(s)	371, 721
XbaI	TCTAGA	1 cut(s)	605
XcmI	CCANNNNNNNNNTGG	1 cut(s)	332
XmaJI	CCTAGG	1 cut(s)	982
XspI	CTAG	5 cut(s)	149, 555, 606, 983, 1133
ZrmI	AGTACT	1 cut(s)	575

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.