Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0001163

Physical Location & Seq

Genomic Coordinates Forward (+)

2093477 .. 2096784

Gene Structure 3308 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g03740.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1245 bp

ATGACTGAAGGTAATGGGATCAAGGCTCCAGAGAAGCTTGAGGGTTATTTTAAAGCTATGGCAATTTGTTGGCTCCTCGGACTAGGGTCCTTAGTCGCATGGAACAGCGTGCTTACTATAGGAGATTACTATGGAGTATTGTTTCCGAACTACCATCCTTCAAGGGTTCTCACTCTTGTTTATCAACCATTTGCATTCATTTCAATGGGAATACTTGCATACAAGGAAGCAACCGTTAATACCAGAAAGAGGATTTTAGTTGGATATACTCTCTTCTTTATTGGTACCTTGATGATGATTGTCGTGGATCTTGCTACATCCGGCCACGGAGGAGTCGGACCTTATATTGGTATATGTGCAATGGTTGGTGTATTTGGGGTTGCAGATGGTCATGTTCAAGGTGGAGTCATTGGTGATTTATCCTTGATGCGCCCTGAATTCATCCAGTCCTTCTTTGCTGGCTTGGCTGCATCAGGTGCTCTAACATCTGCCTTGAGGCTGATGACGAGGGCTGCTTTTGAGAAGTATCATAATGGTCTTCGTAAGGGAACAATCATGTTCTTGGCCCTTTCCACATTCATCGAGTTCCTGTGTATATTTCTGTATGCAATGTACTTCTCTAAGTTACCTATAGTAAAGCACTATCGCTCAAAGGCAGCCTCAGAAGGCTCCAAAACTGTAATGGCTGATCTTGCTGCCGGTGGCATCCAAACACAAGTAGACATAGAAGCAATTCCACAACGATTGACCACTAAGCAATTATTCATTCAGAATTATGATTATGCACTAGGCATATTTCTGATATATGCACTGACATTATCAATCTTCCCTGGTTTCCTTTTCGAAAACACTGGAGAACACAAACTGGGCACATGGTATCCCCTTGTTCTGATTGCAATGTACAACGTGTTGGATCTTATATCAAGATACACACCACTTATACCATGCTTGAAGATTGAAAACAGAAAGGGCCTCATGATTGCAATTGGACTGCGTTTTCTCTTTGTTCCAGCATTCTACTTCACTGCAAAATATGCTGATCAAGGTTGGATGATCCTGCTCACCTCACTCTTGGGTTTTACAAATGGTCATCTTACTGTTTGTCTCATGACAGTGGCACCGAAAGGTTACATGGGACCTGAGCAGAATGCCTTGGGCAATGTCCTTGCTTTCTGTCTTATGTGTGGCATATTTGCTGGGGTTTTACTCGATTGGTTGTGGATCATTGGCAATGGGAAATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005337 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0015858 GO:0015931 GO:0015932 GO:0016020 GO:0022857 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:1901264 GO:1901505 GO:1901642

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nucleoside_tran

Protein Analysis

415

Amino Acids

45.6

Weight (kDa)

8.9

Isoelectric Point (pI)

29.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nucleoside_tran	PF01733	120 - 407	1.2e-28	Nucleoside transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001163)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61630 AT4G05110 AT4G05110 AT4G05110 AT4G05120 AT4G05120 AT4G05130 AT4G05140
fragaria_vesca	FvH4_3g03740 FvH4_3g03740 FvH4_3g03740 FvH4_3g03740 FvH4_3g03750 FvH4_5g10501
malus_domestica	MD05G1326900.v1.1 MD10G1305000.v1.1
prunus_persica	Prupe.4G034600_v2.0.a1
pyrus_communis	pycom05g30120 pycom10g25750
rosa_chinensis	RchiOBHm_Chr5g0005801 RchiOBHm_Chr5g0005811 RchiOBHm_Chr5g0005821 RchiOBHm_Chr7g0187631
rosa_laevigata	RLG00000004764 RLG00000031327 RLG00000031328 RLG00000031329
rosa_multiflora	Rmu_sc0002694.1_g000001
rosa_roxburghii	Rroxscaffold_1G00070040 Rroxscaffold_1G00070050 Rroxscaffold_1G00070060 Rroxscaffold_3G00267210
rosa_rugosa	Rorug04G0418200 Rorug04G0418300 Rorug04G0418400 Rorug04G0418500 Rorug04G0418500 Rorug04G0418600 Rorug04G0418700 Rorug06G0483300
rosa_samantha	Rh5AG045700 Rh5AG045800 Rh5AG045900 Rh5BG044400 Rh5BG044600 Rh5CG053200 Rh5CG053400 Rh5CG053500 Rh5DG044300 Rh7AG088200 Rh7BG089500 Rh7CG088800 Rh7DG090500
rosa_wichuraiana	Rw0G002660 Rw5G004600 Rw5G004610 Rw5G004620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	284
AccB1I	GGYRCC	2 cut(s)	284, 1117
AccI	GTMKAC	1 cut(s)	720
AclWI	GGATC	5 cut(s)	26, 315, 921, 1048, 1229
AcoI	YGGCCR	1 cut(s)	322
AcsI	RAATTY	2 cut(s)	437, 1238
AcuI	CTGAAG	1 cut(s)	27
AfaI	GTAC	3 cut(s)	286, 614, 902
AfiI	CCNNNNNNNGG	2 cut(s)	249, 347
AflIII	ACRYGT	1 cut(s)	906
AgsI	TTSAA	5 cut(s)	162, 204, 398, 952, 959
AjnI	CCWGG	1 cut(s)	829
AluBI	AGCT	2 cut(s)	37, 56
AluI	AGCT	2 cut(s)	37, 56
Alw21I	GWGCWC	1 cut(s)	481
Alw26I	GTCTC	1 cut(s)	1109
AlwI	GGATC	5 cut(s)	26, 315, 921, 1048, 1229
AoxI	GGCC	3 cut(s)	322, 564, 970
ApeKI	GCWGC	4 cut(s)	467, 512, 656, 695
ApoI	RAATTY	2 cut(s)	437, 1238
Asp700I	GAANNNNTTC	1 cut(s)	732
Asp718I	GGTACC	1 cut(s)	284
AspLEI	GCGC	1 cut(s)	432
AspS9I	GGNCC	5 cut(s)	87, 338, 565, 970, 1136
AsuHPI	GGTGA	2 cut(s)	425, 1054
AsuII	TTCGAA	1 cut(s)	843
AvaII	GGWCC	3 cut(s)	87, 338, 1136
BaeGI	GKGCMC	1 cut(s)	872
BanI	GGYRCC	2 cut(s)	284, 1117
BbsI	GAAGAC	1 cut(s)	530
Bbv12I	GWGCWC	1 cut(s)	481
BbvI	GCAGC	4 cut(s)	454, 499, 668, 682
BccI	CCATC	2 cut(s)	162, 380
BciT130I	CCWGG	1 cut(s)	831
BciVI	GTATCC	1 cut(s)	888
BclI	TGATCA	1 cut(s)	1039
BcoDI	GTCTC	1 cut(s)	1109
BfaI	CTAG	2 cut(s)	83, 788
BfmI	CTRYAG	2 cut(s)	117, 630
BfuI	GTATCC	1 cut(s)	888
BisI	GCNGC	4 cut(s)	468, 513, 657, 696
BlsI	GCNGC	4 cut(s)	469, 514, 658, 697
Bme1390I	CCNGG	1 cut(s)	831
Bme18I	GGWCC	3 cut(s)	87, 338, 1136
BmgT120I	GGNCC	5 cut(s)	87, 338, 565, 970, 1136
BmiI	GGNNCC	7 cut(s)	27, 74, 88, 286, 670, 1119, 1137
BmrFI	CCNGG	1 cut(s)	831
BmrI	ACTGGG	1 cut(s)	875
BmsI	GCATC	3 cut(s)	417, 479, 714
BmuI	ACTGGG	1 cut(s)	875
BoxI	GACNNNNGTC	1 cut(s)	85
BpiI	GAAGAC	1 cut(s)	530
BpmI	CTGGAG	2 cut(s)	12, 873
Bpu10I	CCTNAGC	1 cut(s)	1140
Bpu14I	TTCGAA	1 cut(s)	843
BpuEI	CTTGAG	2 cut(s)	59, 514
BsaJI	CCNNGG	4 cut(s)	76, 325, 829, 1152
Bsc4I	CCNNNNNNNGG	2 cut(s)	249, 347
Bse118I	RCCGGY	1 cut(s)	698
Bse1I	ACTGG	3 cut(s)	445, 856, 870
Bse3DI	GCAATG	5 cut(s)	366, 615, 903, 1165, 1237
BseBI	CCWGG	1 cut(s)	831
BseDI	CCNNGG	4 cut(s)	76, 325, 829, 1152
BseGI	GGATG	5 cut(s)	154, 317, 441, 705, 1056
BseLI	CCNNNNNNNGG	2 cut(s)	249, 347
BseMI	GCAATG	5 cut(s)	366, 615, 903, 1165, 1237
BseMII	CTCAG	2 cut(s)	675, 1131
BseNI	ACTGG	3 cut(s)	445, 856, 870
BseRI	GAGGAG	2 cut(s)	65, 345
BseSI	GKGCMC	1 cut(s)	872
BseXI	GCAGC	4 cut(s)	454, 499, 668, 682
BseYI	CCCAGC	1 cut(s)	1196
BshFI	GGCC	3 cut(s)	324, 566, 972
BshNI	GGYRCC	2 cut(s)	284, 1117
BsiHKAI	GWGCWC	1 cut(s)	481
BsiSI	CCGG	2 cut(s)	321, 699
BslFI	GGGAC	1 cut(s)	1149
BslI	CCNNNNNNNGG	2 cut(s)	249, 347
BsmAI	GTCTC	1 cut(s)	1109
BsmFI	GGGAC	1 cut(s)	1149
BsmI	GAATGC	3 cut(s)	194, 1013, 1153
BsnI	GGCC	3 cut(s)	324, 566, 972
Bsp119I	TTCGAA	1 cut(s)	843
Bsp1286I	GDGCHC	2 cut(s)	481, 872
Bsp1407I	TGTACA	1 cut(s)	900
Bsp143I	GATC	7 cut(s)	18, 307, 688, 913, 1039, 1053, 1221
BspANI	GGCC	3 cut(s)	324, 566, 972
BspCNI	CTCAG	2 cut(s)	674, 1132
BspHI	TCATGA	2 cut(s)	975, 1107
BspLI	GGNNCC	7 cut(s)	27, 74, 88, 286, 670, 1119, 1137
BspPI	GGATC	5 cut(s)	26, 315, 921, 1048, 1229
BspT104I	TTCGAA	1 cut(s)	843
BspT107I	GGYRCC	2 cut(s)	284, 1117
BsrDI	GCAATG	5 cut(s)	366, 615, 903, 1165, 1237
BsrFI	RCCGGY	1 cut(s)	698
BsrGI	TGTACA	1 cut(s)	900
BsrI	ACTGG	3 cut(s)	445, 856, 870
BssAI	RCCGGY	1 cut(s)	698
BssECI	CCNNGG	4 cut(s)	76, 325, 829, 1152
BssMI	GATC	7 cut(s)	18, 307, 688, 913, 1039, 1053, 1221
BssT1I	CCWWGG	1 cut(s)	1152
Bst2UI	CCWGG	1 cut(s)	831
Bst4CI	ACNGT	4 cut(s)	235, 679, 1099, 1114
Bst6I	CTCTTC	1 cut(s)	278
BstAPI	GCANNNNNTGC	2 cut(s)	476, 1034
BstAUI	TGTACA	1 cut(s)	900
BstBI	TTCGAA	1 cut(s)	843
BstC8I	GCNNGC	2 cut(s)	110, 460
BstDEI	CTNAG	5 cut(s)	91, 621, 661, 753, 1140
BstDSI	CCRYGG	1 cut(s)	325
BstF5I	GGATG	5 cut(s)	154, 317, 441, 705, 1056
BstHHI	GCGC	1 cut(s)	432
BstKTI	GATC	7 cut(s)	21, 310, 691, 916, 1042, 1056, 1224
BstMAI	GTCTC	1 cut(s)	1109
BstMBI	GATC	7 cut(s)	18, 307, 688, 913, 1039, 1053, 1221
BstMWI	GCNNNNNNNGC	4 cut(s)	464, 476, 692, 1034
BstNI	CCWGG	1 cut(s)	831
BstPAI	GACNNNNGTC	1 cut(s)	85
BstSCI	CCNGG	1 cut(s)	829
BstSFI	CTRYAG	2 cut(s)	117, 630
BstSLI	GKGCMC	1 cut(s)	872
BstV1I	GCAGC	4 cut(s)	454, 499, 668, 682
BstV2I	GAAGAC	1 cut(s)	530
BstX2I	RGATCY	2 cut(s)	307, 913
BstYI	RGATCY	2 cut(s)	307, 913
BsuI	GTATCC	1 cut(s)	888
BsuRI	GGCC	3 cut(s)	324, 566, 972
BtgI	CCRYGG	1 cut(s)	325
BtsCI	GGATG	5 cut(s)	154, 317, 441, 705, 1056
BtsI	GCAGTG	1 cut(s)	1023
BtsIMutI	CAGTG	4 cut(s)	809, 849, 1023, 1119
Cac8I	GCNNGC	2 cut(s)	110, 460
CciI	TCATGA	2 cut(s)	975, 1107
CfoI	GCGC	1 cut(s)	432
Cfr10I	RCCGGY	1 cut(s)	698
Cfr13I	GGNCC	5 cut(s)	87, 338, 565, 970, 1136
Csp6I	GTAC	3 cut(s)	285, 613, 901
CspCI	CAANNNNNGTGG	2 cut(s)	726, 761
CviAII	CATG	8 cut(s)	99, 392, 556, 873, 945, 976, 1108, 1132
CviQI	GTAC	3 cut(s)	285, 613, 901
DdeI	CTNAG	5 cut(s)	91, 621, 661, 753, 1140
DpnI	GATC	7 cut(s)	20, 309, 690, 915, 1041, 1055, 1223
DpnII	GATC	7 cut(s)	18, 307, 688, 913, 1039, 1053, 1221
DraI	TTTAAA	1 cut(s)	52
EaeI	YGGCCR	1 cut(s)	322
Eam1104I	CTCTTC	1 cut(s)	278
EarI	CTCTTC	1 cut(s)	278
Eco130I	CCWWGG	1 cut(s)	1152
Eco47I	GGWCC	3 cut(s)	87, 338, 1136
Eco57I	CTGAAG	1 cut(s)	27
EcoO109I	RGGNCCY	3 cut(s)	87, 970, 1136
EcoRI	GAATTC	1 cut(s)	437
EcoRII	CCWGG	1 cut(s)	829
EcoT14I	CCWWGG	1 cut(s)	1152
ErhI	CCWWGG	1 cut(s)	1152
FaeI	CATG	8 cut(s)	102, 395, 559, 876, 948, 979, 1111, 1135
FaqI	GGGAC	1 cut(s)	1149
FatI	CATG	8 cut(s)	98, 391, 555, 872, 944, 975, 1107, 1131
FbaI	TGATCA	1 cut(s)	1039
FblI	GTMKAC	1 cut(s)	720
Fnu4HI	GCNGC	4 cut(s)	468, 513, 657, 696
FokI	GGATG	5 cut(s)	141, 304, 428, 692, 1063
Fsp4HI	GCNGC	4 cut(s)	468, 513, 657, 696
FspBI	CTAG	2 cut(s)	83, 788
GlaI	GCGC	1 cut(s)	431
GluI	GCNGC	4 cut(s)	468, 513, 657, 696
GsaI	CCCAGC	1 cut(s)	1200
GsuI	CTGGAG	2 cut(s)	12, 873
HaeIII	GGCC	3 cut(s)	324, 566, 972
HapII	CCGG	2 cut(s)	321, 699
HhaI	GCGC	1 cut(s)	432
Hin1II	CATG	8 cut(s)	102, 395, 559, 876, 948, 979, 1111, 1135
Hin6I	GCGC	1 cut(s)	430
HinP1I	GCGC	1 cut(s)	430
HindIII	AAGCTT	1 cut(s)	35
HinfI	GANTC	2 cut(s)	333, 405
HpaII	CCGG	2 cut(s)	321, 699
HphI	GGTGA	2 cut(s)	425, 1054
Hpy166II	GTNNAC	1 cut(s)	721
Hpy188I	TCNGA	7 cut(s)	80, 147, 338, 664, 771, 801, 891
Hpy188III	TCNNGA	4 cut(s)	29, 924, 976, 1108
Hpy8I	GTNNAC	1 cut(s)	721
HpyAV	CCTTC	3 cut(s)	168, 460, 659
HpyCH4III	ACNGT	4 cut(s)	235, 679, 1099, 1114
HpyCH4IV	ACGT	1 cut(s)	906
HpyF10VI	GCNNNNNNNGC	4 cut(s)	464, 476, 692, 1034
HpyF3I	CTNAG	5 cut(s)	91, 621, 661, 753, 1140
HpySE526I	ACGT	1 cut(s)	906
Hsp92II	CATG	8 cut(s)	102, 395, 559, 876, 948, 979, 1111, 1135
HspAI	GCGC	1 cut(s)	430
KpnI	GGTACC	1 cut(s)	288
Ksp22I	TGATCA	1 cut(s)	1039
Kzo9I	GATC	7 cut(s)	18, 307, 688, 913, 1039, 1053, 1221
LmnI	GCTCC	3 cut(s)	31, 78, 674
Lsp1109I	GCAGC	4 cut(s)	454, 499, 668, 682
LweI	GCATC	3 cut(s)	417, 479, 714
MaeI	CTAG	2 cut(s)	83, 788
MaeII	ACGT	1 cut(s)	906
MaeIII	GTNAC	2 cut(s)	624, 1127
MalI	GATC	7 cut(s)	20, 309, 690, 915, 1041, 1055, 1223
MboI	GATC	7 cut(s)	18, 307, 688, 913, 1039, 1053, 1221
MboII	GAAGA	4 cut(s)	265, 530, 817, 964
MfeI	CAATTG	1 cut(s)	984
MflI	RGATCY	2 cut(s)	307, 913
MhlI	GDGCHC	2 cut(s)	481, 872
MluCI	AATT	7 cut(s)	63, 437, 732, 758, 772, 984, 1238
MlyI	GAGTC	2 cut(s)	342, 414
MmeI	TCCRAC	4 cut(s)	241, 316, 891, 1028
MnlI	CCTC	9 cut(s)	34, 86, 243, 323, 489, 501, 670, 983, 1075
MroXI	GAANNNNTTC	1 cut(s)	732
MseI	TTAA	2 cut(s)	51, 237
MslI	CAYNNNNRTG	2 cut(s)	203, 1112
MspI	CCGG	2 cut(s)	321, 699
MspR9I	CCNGG	1 cut(s)	831
MunI	CAATTG	1 cut(s)	984
Mva1269I	GAATGC	3 cut(s)	194, 1013, 1153
MvaI	CCWGG	1 cut(s)	831
MwoI	GCNNNNNNNGC	4 cut(s)	464, 476, 692, 1034
NdeII	GATC	7 cut(s)	18, 307, 688, 913, 1039, 1053, 1221
NlaIII	CATG	8 cut(s)	102, 395, 559, 876, 948, 979, 1111, 1135
NlaIV	GGNNCC	7 cut(s)	27, 74, 88, 286, 670, 1119, 1137
NspV	TTCGAA	1 cut(s)	843
PagI	TCATGA	2 cut(s)	975, 1107
PctI	GAATGC	3 cut(s)	194, 1013, 1153
PdmI	GAANNNNTTC	1 cut(s)	732
PkrI	GCNGC	4 cut(s)	469, 514, 658, 697
PleI	GAGTC	2 cut(s)	341, 413
PpsI	GAGTC	2 cut(s)	341, 413
PpuMI	RGGWCCY	2 cut(s)	87, 1136
PshAI	GACNNNNGTC	1 cut(s)	85
Psp5II	RGGWCCY	2 cut(s)	87, 1136
Psp6I	CCWGG	1 cut(s)	829
PspFI	CCCAGC	1 cut(s)	1196
PspGI	CCWGG	1 cut(s)	829
PspN4I	GGNNCC	7 cut(s)	27, 74, 88, 286, 670, 1119, 1137
PspPI	GGNCC	5 cut(s)	87, 338, 565, 970, 1136
PspPPI	RGGWCCY	2 cut(s)	87, 1136
PsuI	RGATCY	2 cut(s)	307, 913
RsaI	GTAC	3 cut(s)	286, 614, 902
RsaNI	GTAC	3 cut(s)	285, 613, 901
RseI	CAYNNNNRTG	2 cut(s)	203, 1112
SaqAI	TTAA	2 cut(s)	51, 237
SatI	GCNGC	4 cut(s)	468, 513, 657, 696
Sau3AI	GATC	7 cut(s)	18, 307, 688, 913, 1039, 1053, 1221
Sau96I	GGNCC	5 cut(s)	87, 338, 565, 970, 1136
SchI	GAGTC	2 cut(s)	342, 414
ScrFI	CCNGG	1 cut(s)	831
SduI	GDGCHC	2 cut(s)	481, 872
SfaNI	GCATC	3 cut(s)	417, 479, 714
SfcI	CTRYAG	2 cut(s)	117, 630
SfuI	TTCGAA	1 cut(s)	843
SinI	GGWCC	3 cut(s)	87, 338, 1136
SmiMI	CAYNNNNRTG	2 cut(s)	203, 1112
SmlI	CTYRAG	2 cut(s)	38, 493
SmoI	CTYRAG	2 cut(s)	38, 493
Sse9I	AATT	7 cut(s)	63, 437, 732, 758, 772, 984, 1238
SspMI	CTAG	2 cut(s)	83, 788
StyD4I	CCNGG	1 cut(s)	829
StyI	CCWWGG	1 cut(s)	1152
TaaI	ACNGT	4 cut(s)	235, 679, 1099, 1114
TaiI	ACGT	1 cut(s)	909
TaqI	TCGA	3 cut(s)	582, 843, 1209
TasI	AATT	7 cut(s)	63, 437, 732, 758, 772, 984, 1238
TatI	WGTACW	2 cut(s)	612, 900
Tru1I	TTAA	2 cut(s)	51, 237
Tru9I	TTAA	2 cut(s)	51, 237
TscAI	CASTG	4 cut(s)	816, 856, 1030, 1119
TseI	GCWGC	4 cut(s)	467, 512, 656, 695
TspDTI	ATGAA	4 cut(s)	187, 430, 568, 754
TspGWI	ACGGA	1 cut(s)	342
TspRI	CASTG	4 cut(s)	816, 856, 1030, 1119
VpaK11BI	GGWCC	3 cut(s)	87, 338, 1136
XapI	RAATTY	2 cut(s)	437, 1238
XcmI	CCANNNNNNNNNTGG	1 cut(s)	679
XmiI	GTMKAC	1 cut(s)	720
XmnI	GAANNNNTTC	1 cut(s)	732
XspI	CTAG	2 cut(s)	83, 788

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.