Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0001163

Physical Location & Seq

Genomic Coordinates Forward (+)

3829005 .. 3831004

Gene Structure 2000 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG053400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGCAGGGAGTAGAAATGGTTGATGCTCCACTTCAGGGACAGTATAAAGCTATGGCAGTTTGTTGGGTTCTTGGACTAGGGACTCTATTTGCGTGGAACAGTATGGTGACTATTGAAGATTACTATTATGTTCTATTTCCGGAATACCATCCTTCGCGGGTTCTTACCTGTCTTTATCAACCATTTGCACTTGCAATATTGGCAATATTTTCATACAATGAGGCAGAAGTTGATACAAGAAGGAGGATCTTAGTTGGTTACAATCTCTTCTTCCTTGGTACCTTTATGCTAATAATCGTAGATTTAGCTACATCTGGGACTGGAGGGATTGGATATTTTATTAGTATATGCGCAATTGTTGGTGCATTTGGGGTTGCAAGTGCCCATGTTGAAGGTGGAGTTGTGGGTGAGCTATCTTTTATGTGCCCTGAATTCATCCAGTCCTTCTTTGCTGGCTTGGGTGCAGCAGGTGCTCTGACTTCTGCCTTAAGGTTGGTGACAAAAGCTGCCTTTAAGAACTACGACAATGGTCTTCGCAAGGGAGCACTGTTGTTCCTGGGAATTTCCACATTCATTGAGCTTTTGTGTGTTCTATCATATGCAATTTACTTCCCGAGATTGCCTATAGTAAAGTATTACCGCTCAAAGGCAGCCTCAGAAGGTTCTAAAACAGTATCAGCTGATCTTGCCGCTGCTGGGACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005337 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0015858 GO:0015931 GO:0015932 GO:0016020 GO:0022857 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:1901264 GO:1901505 GO:1901642

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nucleoside_tran

Protein Analysis

234

Amino Acids

25.34

Weight (kDa)

6.11

Isoelectric Point (pI)

31.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nucleoside_tran	PF01733	123 - 219	2e-10	Nucleoside transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001163)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61630 AT4G05110 AT4G05110 AT4G05110 AT4G05120 AT4G05120 AT4G05130 AT4G05140
fragaria_vesca	FvH4_3g03740 FvH4_3g03740 FvH4_3g03740 FvH4_3g03740 FvH4_3g03750 FvH4_5g10501
malus_domestica	MD05G1326900.v1.1 MD10G1305000.v1.1
prunus_persica	Prupe.4G034600_v2.0.a1
pyrus_communis	pycom05g30120 pycom10g25750
rosa_chinensis	RchiOBHm_Chr5g0005801 RchiOBHm_Chr5g0005811 RchiOBHm_Chr5g0005821 RchiOBHm_Chr7g0187631
rosa_laevigata	RLG00000004764 RLG00000031327 RLG00000031328 RLG00000031329
rosa_multiflora	Rmu_sc0002694.1_g000001
rosa_roxburghii	Rroxscaffold_1G00070040 Rroxscaffold_1G00070050 Rroxscaffold_1G00070060 Rroxscaffold_3G00267210
rosa_rugosa	Rorug04G0418200 Rorug04G0418300 Rorug04G0418400 Rorug04G0418500 Rorug04G0418500 Rorug04G0418600 Rorug04G0418700 Rorug06G0483300
rosa_samantha	Rh5AG045700 Rh5AG045800 Rh5AG045900 Rh5BG044400 Rh5BG044600 Rh5CG053200 Rh5CG053400 Rh5CG053500 Rh5DG044300 Rh7AG088200 Rh7BG089500 Rh7CG088800 Rh7DG090500
rosa_wichuraiana	Rw0G002660 Rw5G004600 Rw5G004610 Rw5G004620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	458
Acc16I	TGCGCA	1 cut(s)	352
Acc36I	ACCTGC	1 cut(s)	458
Acc65I	GGTACC	1 cut(s)	278
AccB1I	GGYRCC	1 cut(s)	278
AccBSI	CCGCTC	1 cut(s)	642
AccII	CGCG	1 cut(s)	157
AccIII	TCCGGA	1 cut(s)	139
AciI	CCGC	3 cut(s)	157, 640, 690
AclWI	GGATC	1 cut(s)	254
AcsI	RAATTY	2 cut(s)	431, 561
AcuI	CTGAAG	1 cut(s)	17
AfaI	GTAC	1 cut(s)	280
AfiI	CCNNNNNNNGG	3 cut(s)	35, 646, 696
AflII	CTTAAG	1 cut(s)	487
AgsI	TTSAA	2 cut(s)	116, 392
AjnI	CCWGG	1 cut(s)	555
AluBI	AGCT	6 cut(s)	50, 308, 412, 506, 580, 680
AluI	AGCT	6 cut(s)	50, 308, 412, 506, 580, 680
Alw21I	GWGCWC	2 cut(s)	475, 547
AlwI	GGATC	1 cut(s)	254
Ama87I	CYCGRG	1 cut(s)	613
Aor13HI	TCCGGA	1 cut(s)	139
ApeKI	GCWGC	4 cut(s)	464, 506, 650, 692
ApoI	RAATTY	2 cut(s)	431, 561
Asp718I	GGTACC	1 cut(s)	278
AspLEI	GCGC	1 cut(s)	353
AspS9I	GGNCC	1 cut(s)	699
AsuHPI	GGTGA	3 cut(s)	118, 419, 508
AvaI	CYCGRG	1 cut(s)	613
AvaII	GGWCC	1 cut(s)	699
BaeGI	GKGCMC	2 cut(s)	385, 428
BanI	GGYRCC	1 cut(s)	278
BbsI	GAAGAC	1 cut(s)	524
Bbv12I	GWGCWC	2 cut(s)	475, 547
BbvI	GCAGC	4 cut(s)	476, 493, 662, 679
BccI	CCATC	1 cut(s)	156
BciT130I	CCWGG	1 cut(s)	557
BfaI	CTAG	1 cut(s)	77
BfmI	CTRYAG	1 cut(s)	624
BfrI	CTTAAG	1 cut(s)	487
BfuAI	ACCTGC	1 cut(s)	458
BisI	GCNGC	5 cut(s)	465, 507, 651, 690, 693
BlsI	GCNGC	5 cut(s)	466, 508, 652, 691, 694
Bme1390I	CCNGG	1 cut(s)	557
Bme18I	GGWCC	1 cut(s)	699
BmeT110I	CYCGRG	1 cut(s)	613
BmgT120I	GGNCC	1 cut(s)	699
BmiI	GGNNCC	2 cut(s)	280, 700
BmrFI	CCNGG	1 cut(s)	557
BmsI	GCATC	1 cut(s)	13
BoxI	GACNNNNGTC	1 cut(s)	528
BpiI	GAAGAC	1 cut(s)	524
BpmI	CTGGAG	1 cut(s)	342
BsaJI	CCNNGG	2 cut(s)	274, 556
BsaWI	WCCGGW	1 cut(s)	139
Bsc4I	CCNNNNNNNGG	3 cut(s)	35, 646, 696
Bse1I	ACTGG	2 cut(s)	325, 439
BseAI	TCCGGA	1 cut(s)	139
BseBI	CCWGG	1 cut(s)	557
BseDI	CCNNGG	2 cut(s)	274, 556
BseGI	GGATG	2 cut(s)	148, 435
BseLI	CCNNNNNNNGG	3 cut(s)	35, 646, 696
BseMII	CTCAG	1 cut(s)	669
BseNI	ACTGG	2 cut(s)	325, 439
BseSI	GKGCMC	2 cut(s)	385, 428
BseXI	GCAGC	4 cut(s)	476, 493, 662, 679
BseYI	CCCAGC	1 cut(s)	695
BsgI	GTGCAG	1 cut(s)	483
Bsh1236I	CGCG	1 cut(s)	157
BshNI	GGYRCC	1 cut(s)	278
BsiHKAI	GWGCWC	2 cut(s)	475, 547
BsiHKCI	CYCGRG	1 cut(s)	613
BsiSI	CCGG	1 cut(s)	140
BslFI	GGGAC	3 cut(s)	51, 94, 331
BslI	CCNNNNNNNGG	3 cut(s)	35, 646, 696
BsmFI	GGGAC	3 cut(s)	51, 94, 331
BsoBI	CYCGRG	1 cut(s)	613
Bsp1286I	GDGCHC	4 cut(s)	385, 428, 475, 547
Bsp13I	TCCGGA	1 cut(s)	139
Bsp143I	GATC	2 cut(s)	246, 682
BspACI	CCGC	3 cut(s)	157, 640, 690
BspCNI	CTCAG	1 cut(s)	668
BspEI	TCCGGA	1 cut(s)	139
BspFNI	CGCG	1 cut(s)	157
BspLI	GGNNCC	2 cut(s)	280, 700
BspMI	ACCTGC	1 cut(s)	458
BspPI	GGATC	1 cut(s)	254
BspT107I	GGYRCC	1 cut(s)	278
BspTI	CTTAAG	1 cut(s)	487
BsrBI	CCGCTC	1 cut(s)	642
BsrI	ACTGG	2 cut(s)	325, 439
BssECI	CCNNGG	2 cut(s)	274, 556
BssMI	GATC	2 cut(s)	246, 682
BssT1I	CCWWGG	1 cut(s)	274
Bst2UI	CCWGG	1 cut(s)	557
Bst4CI	ACNGT	4 cut(s)	42, 101, 549, 673
Bst6I	CTCTTC	1 cut(s)	272
BstAFI	CTTAAG	1 cut(s)	487
BstAPI	GCANNNNNTGC	1 cut(s)	470
BstC8I	GCNNGC	1 cut(s)	454
BstDEI	CTNAG	2 cut(s)	250, 655
BstF5I	GGATG	2 cut(s)	148, 435
BstFNI	CGCG	1 cut(s)	157
BstHHI	GCGC	1 cut(s)	353
BstKTI	GATC	2 cut(s)	249, 685
BstMBI	GATC	2 cut(s)	246, 682
BstMWI	GCNNNNNNNGC	3 cut(s)	200, 470, 686
BstNI	CCWGG	1 cut(s)	557
BstPAI	GACNNNNGTC	1 cut(s)	528
BstSCI	CCNGG	1 cut(s)	555
BstSFI	CTRYAG	1 cut(s)	624
BstSLI	GKGCMC	2 cut(s)	385, 428
BstUI	CGCG	1 cut(s)	157
BstV1I	GCAGC	4 cut(s)	476, 493, 662, 679
BstV2I	GAAGAC	1 cut(s)	524
BstX2I	RGATCY	1 cut(s)	246
BstYI	RGATCY	1 cut(s)	246
BtsCI	GGATG	2 cut(s)	148, 435
BtsIMutI	CAGTG	1 cut(s)	545
BveI	ACCTGC	1 cut(s)	458
Cac8I	GCNNGC	1 cut(s)	454
CfoI	GCGC	1 cut(s)	353
Cfr13I	GGNCC	1 cut(s)	699
Csp6I	GTAC	1 cut(s)	279
CspCI	CAANNNNNGTGG	2 cut(s)	556, 591
CviAII	CATG	1 cut(s)	386
CviJI	RGCY	8 cut(s)	50, 308, 412, 456, 506, 580, 653, 680
CviKI_1	RGCY	8 cut(s)	50, 308, 412, 456, 506, 580, 653, 680
CviQI	GTAC	1 cut(s)	279
DdeI	CTNAG	2 cut(s)	250, 655
DpnI	GATC	2 cut(s)	248, 684
DpnII	GATC	2 cut(s)	246, 682
Eam1104I	CTCTTC	1 cut(s)	272
EarI	CTCTTC	1 cut(s)	272
Eco130I	CCWWGG	1 cut(s)	274
Eco47I	GGWCC	1 cut(s)	699
Eco57I	CTGAAG	1 cut(s)	17
Eco88I	CYCGRG	1 cut(s)	613
EcoO109I	RGGNCCY	1 cut(s)	699
EcoRI	GAATTC	1 cut(s)	431
EcoRII	CCWGG	1 cut(s)	555
EcoT14I	CCWWGG	1 cut(s)	274
ErhI	CCWWGG	1 cut(s)	274
FaeI	CATG	1 cut(s)	389
FaqI	GGGAC	3 cut(s)	51, 94, 331
FatI	CATG	1 cut(s)	385
FauI	CCCGC	1 cut(s)	150
FauNDI	CATATG	1 cut(s)	598
Fnu4HI	GCNGC	5 cut(s)	465, 507, 651, 690, 693
FokI	GGATG	2 cut(s)	135, 422
Fsp4HI	GCNGC	5 cut(s)	465, 507, 651, 690, 693
FspBI	CTAG	1 cut(s)	77
FspI	TGCGCA	1 cut(s)	352
GlaI	GCGC	1 cut(s)	352
GluI	GCNGC	5 cut(s)	465, 507, 651, 690, 693
GsaI	CCCAGC	1 cut(s)	699
GsuI	CTGGAG	1 cut(s)	342
HapII	CCGG	1 cut(s)	140
HhaI	GCGC	1 cut(s)	353
Hin1II	CATG	1 cut(s)	389
Hin6I	GCGC	1 cut(s)	351
HinP1I	GCGC	1 cut(s)	351
HinfI	GANTC	1 cut(s)	82
HpaII	CCGG	1 cut(s)	140
HphI	GGTGA	3 cut(s)	118, 419, 508
Hpy188I	TCNGA	2 cut(s)	477, 658
Hpy188III	TCNNGA	2 cut(s)	140, 613
HpyAV	CCTTC	5 cut(s)	162, 234, 386, 454, 653
HpyCH4III	ACNGT	4 cut(s)	42, 101, 549, 673
HpyCH4V	TGCA	7 cut(s)	4, 188, 194, 365, 377, 464, 602
HpyF10VI	GCNNNNNNNGC	3 cut(s)	200, 470, 686
HpyF3I	CTNAG	2 cut(s)	250, 655
Hsp92II	CATG	1 cut(s)	389
HspAI	GCGC	1 cut(s)	351
Kpn2I	TCCGGA	1 cut(s)	139
KpnI	GGTACC	1 cut(s)	282
Kzo9I	GATC	2 cut(s)	246, 682
LmnI	GCTCC	2 cut(s)	31, 542
Lsp1109I	GCAGC	4 cut(s)	476, 493, 662, 679
LweI	GCATC	1 cut(s)	13
MaeI	CTAG	1 cut(s)	77
MaeIII	GTNAC	3 cut(s)	106, 257, 496
MalI	GATC	2 cut(s)	248, 684
MbiI	CCGCTC	1 cut(s)	642
MboI	GATC	2 cut(s)	246, 682
MboII	GAAGA	4 cut(s)	128, 259, 262, 524
MfeI	CAATTG	1 cut(s)	354
MflI	RGATCY	1 cut(s)	246
MhlI	GDGCHC	4 cut(s)	385, 428, 475, 547
MluCI	AATT	4 cut(s)	354, 431, 561, 603
MlyI	GAGTC	1 cut(s)	76
MnlI	CCTC	4 cut(s)	214, 237, 317, 664
MroI	TCCGGA	1 cut(s)	139
MseI	TTAA	2 cut(s)	488, 513
MspA1I	CMGCKG	2 cut(s)	680, 692
MspCI	CTTAAG	1 cut(s)	487
MspI	CCGG	1 cut(s)	140
MspR9I	CCNGG	1 cut(s)	557
MunI	CAATTG	1 cut(s)	354
MvaI	CCWGG	1 cut(s)	557
MvnI	CGCG	1 cut(s)	157
MwoI	GCNNNNNNNGC	3 cut(s)	200, 470, 686
NdeI	CATATG	1 cut(s)	598
NdeII	GATC	2 cut(s)	246, 682
NlaIII	CATG	1 cut(s)	389
NlaIV	GGNNCC	2 cut(s)	280, 700
NmuCI	GTSAC	2 cut(s)	106, 496
NsbI	TGCGCA	1 cut(s)	352
PaqCI	CACCTGC	1 cut(s)	458
PkrI	GCNGC	5 cut(s)	466, 508, 652, 691, 694
PleI	GAGTC	1 cut(s)	76
PpsI	GAGTC	1 cut(s)	76
PpuMI	RGGWCCY	1 cut(s)	699
PshAI	GACNNNNGTC	1 cut(s)	528
Psp5II	RGGWCCY	1 cut(s)	699
Psp6I	CCWGG	1 cut(s)	555
PspFI	CCCAGC	1 cut(s)	695
PspGI	CCWGG	1 cut(s)	555
PspN4I	GGNNCC	2 cut(s)	280, 700
PspPI	GGNCC	1 cut(s)	699
PspPPI	RGGWCCY	1 cut(s)	699
PsuI	RGATCY	1 cut(s)	246
PvuII	CAGCTG	1 cut(s)	680
RsaI	GTAC	1 cut(s)	280
RsaNI	GTAC	1 cut(s)	279
SaqAI	TTAA	2 cut(s)	488, 513
SatI	GCNGC	5 cut(s)	465, 507, 651, 690, 693
Sau3AI	GATC	2 cut(s)	246, 682
Sau96I	GGNCC	1 cut(s)	699
SchI	GAGTC	1 cut(s)	76
ScrFI	CCNGG	1 cut(s)	557
SduI	GDGCHC	4 cut(s)	385, 428, 475, 547
SfaNI	GCATC	1 cut(s)	13
SfcI	CTRYAG	1 cut(s)	624
SinI	GGWCC	1 cut(s)	699
SmlI	CTYRAG	1 cut(s)	487
SmoI	CTYRAG	1 cut(s)	487
Sse9I	AATT	4 cut(s)	354, 431, 561, 603
SsiI	CCGC	3 cut(s)	157, 640, 690
SspI	AATATT	2 cut(s)	198, 207
SspMI	CTAG	1 cut(s)	77
StyD4I	CCNGG	1 cut(s)	555
StyI	CCWWGG	1 cut(s)	274
TaaI	ACNGT	4 cut(s)	42, 101, 549, 673
TasI	AATT	4 cut(s)	354, 431, 561, 603
TauI	GCSGC	1 cut(s)	692
Tru1I	TTAA	2 cut(s)	488, 513
Tru9I	TTAA	2 cut(s)	488, 513
TscAI	CASTG	1 cut(s)	552
TseFI	GTSAC	2 cut(s)	106, 496
TseI	GCWGC	4 cut(s)	464, 506, 650, 692
Tsp45I	GTSAC	2 cut(s)	106, 496
TspDTI	ATGAA	3 cut(s)	201, 424, 562
TspRI	CASTG	1 cut(s)	552
Vha464I	CTTAAG	1 cut(s)	487
VpaK11BI	GGWCC	1 cut(s)	699
XapI	RAATTY	2 cut(s)	431, 561
XcmI	CCANNNNNNNNNTGG	1 cut(s)	392
XspI	CTAG	1 cut(s)	77

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.