Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0001163

Physical Location & Seq

Genomic Coordinates Forward (+)

3844598 .. 3845800

Gene Structure 1203 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG045900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGGGTGAACTATCTTTTATGCGTCCTGAATTCATCCAGTCCTTCTTTGTTGGCTTGGGTGCAGCAGGTGCTTTAAGTTCTGCCTTAAGATTAGTGACAAAAGCTGCCTTTGAGAAATATGACAACGGTCTTCGCAAGGGAGCAATGTTGTTCTTGGCAACTTGCACATTCATTGAGCTTCTCTGTATATTTTTATATGCAATTTACTTCCCAAGATTGCCTATAGTAGAGTACTACCGCTCAAAGGCAGCCTCAGAAGGCTTTACAACTGTATCCGCTGATCTCGCCGCTGCTGGCATTCAGGAACATGCATCAGATATAGAAGTCCATATTGATGCGAACCTACCAAATAGATTGAGCAATAAGCATTTATTCGTGCAAAATATAGATTATGCAAAATATGGTGACCAGGGATGGATGATCATGCTCACATTAGTCCTAGGATTCACAAATGGTTATCTCAGTGTCTGTGTAGTGACAGTGGCACCACGCGGTTACGAGGGACCTGAGAAAAATGCCTTGGGGAACACTCTTGTGCTGTGTCTTTTGTCTGGCATATTTGTGGGGGGTTGCCTTGGCTGGTTATGGCTCATTGGTAAAGACACATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005337 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0015858 GO:0015931 GO:0015932 GO:0016020 GO:0022857 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:1901264 GO:1901505 GO:1901642

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nucleoside_tran

Protein Analysis

203

Amino Acids

22.26

Weight (kDa)

5.9

Isoelectric Point (pI)

35.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nucleoside_tran	PF01733	2 - 106	7.3e-07	Nucleoside transporter
Nucleoside_tran	PF01733	139 - 196	6.6e-07	Nucleoside transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001163)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61630 AT4G05110 AT4G05110 AT4G05110 AT4G05120 AT4G05120 AT4G05130 AT4G05140
fragaria_vesca	FvH4_3g03740 FvH4_3g03740 FvH4_3g03740 FvH4_3g03740 FvH4_3g03750 FvH4_5g10501
malus_domestica	MD05G1326900.v1.1 MD10G1305000.v1.1
prunus_persica	Prupe.4G034600_v2.0.a1
pyrus_communis	pycom05g30120 pycom10g25750
rosa_chinensis	RchiOBHm_Chr5g0005801 RchiOBHm_Chr5g0005811 RchiOBHm_Chr5g0005821 RchiOBHm_Chr7g0187631
rosa_laevigata	RLG00000004764 RLG00000031327 RLG00000031328 RLG00000031329
rosa_multiflora	Rmu_sc0002694.1_g000001
rosa_roxburghii	Rroxscaffold_1G00070040 Rroxscaffold_1G00070050 Rroxscaffold_1G00070060 Rroxscaffold_3G00267210
rosa_rugosa	Rorug04G0418200 Rorug04G0418300 Rorug04G0418400 Rorug04G0418500 Rorug04G0418500 Rorug04G0418600 Rorug04G0418700 Rorug06G0483300
rosa_samantha	Rh5AG045700 Rh5AG045800 Rh5AG045900 Rh5BG044400 Rh5BG044600 Rh5CG053200 Rh5CG053400 Rh5CG053500 Rh5DG044300 Rh7AG088200 Rh7BG089500 Rh7CG088800 Rh7DG090500
rosa_wichuraiana	Rw0G002660 Rw5G004600 Rw5G004610 Rw5G004620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	56
Acc36I	ACCTGC	1 cut(s)	56
AccB1I	GGYRCC	1 cut(s)	484
AccBSI	CCGCTC	1 cut(s)	240
AccII	CGCG	1 cut(s)	492
AciI	CCGC	4 cut(s)	238, 276, 288, 492
AcsI	RAATTY	1 cut(s)	29
AfaI	GTAC	1 cut(s)	233
AfiI	CCNNNNNNNGG	1 cut(s)	244
AflII	CTTAAG	1 cut(s)	85
AjnI	CCWGG	1 cut(s)	408
AjuI	GAANNNNNNNTTGG	2 cut(s)	503, 535
AleI	CACNNNNGTG	1 cut(s)	533
AluBI	AGCT	2 cut(s)	104, 178
AluI	AGCT	2 cut(s)	104, 178
AlwNI	CAGNNNCTG	1 cut(s)	468
ApeKI	GCWGC	4 cut(s)	62, 104, 248, 290
ApoI	RAATTY	1 cut(s)	29
AspA2I	CCTAGG	1 cut(s)	439
AspS9I	GGNCC	1 cut(s)	503
AsuHPI	GGTGA	2 cut(s)	17, 416
AvaII	GGWCC	1 cut(s)	503
AvrII	CCTAGG	1 cut(s)	439
BaeI	ACNNNNGTAYC	2 cut(s)	255, 288
BanI	GGYRCC	1 cut(s)	484
BbsI	GAAGAC	1 cut(s)	122
BbvI	GCAGC	4 cut(s)	74, 91, 260, 277
BccI	CCATC	1 cut(s)	408
BciT130I	CCWGG	1 cut(s)	410
BciVI	GTATCC	1 cut(s)	283
BclI	TGATCA	1 cut(s)	420
BfaI	CTAG	1 cut(s)	440
BfmI	CTRYAG	1 cut(s)	222
BfrI	CTTAAG	1 cut(s)	85
BfuAI	ACCTGC	1 cut(s)	56
BfuI	GTATCC	1 cut(s)	283
BisI	GCNGC	5 cut(s)	63, 105, 249, 288, 291
BlnI	CCTAGG	1 cut(s)	439
BlsI	GCNGC	5 cut(s)	64, 106, 250, 289, 292
BmcAI	AGTACT	1 cut(s)	233
Bme1390I	CCNGG	1 cut(s)	410
Bme18I	GGWCC	1 cut(s)	503
BmgT120I	GGNCC	1 cut(s)	503
BmiI	GGNNCC	2 cut(s)	486, 504
BmrFI	CCNGG	1 cut(s)	410
BmsI	GCATC	2 cut(s)	320, 325
BoxI	GACNNNNGTC	1 cut(s)	126
BpiI	GAAGAC	1 cut(s)	122
BsaJI	CCNNGG	4 cut(s)	409, 439, 519, 574
Bsc4I	CCNNNNNNNGG	1 cut(s)	244
Bse1I	ACTGG	1 cut(s)	37
Bse3DI	GCAATG	1 cut(s)	150
BseBI	CCWGG	1 cut(s)	410
BseDI	CCNNGG	4 cut(s)	409, 439, 519, 574
BseGI	GGATG	3 cut(s)	33, 419, 423
BseLI	CCNNNNNNNGG	1 cut(s)	244
BseMI	GCAATG	1 cut(s)	150
BseMII	CTCAG	3 cut(s)	267, 475, 498
BseNI	ACTGG	1 cut(s)	37
BseXI	GCAGC	4 cut(s)	74, 91, 260, 277
BsgI	GTGCAG	1 cut(s)	81
Bsh1236I	CGCG	1 cut(s)	492
BshNI	GGYRCC	1 cut(s)	484
BslFI	GGGAC	1 cut(s)	516
BslI	CCNNNNNNNGG	1 cut(s)	244
BsmFI	GGGAC	1 cut(s)	516
BsmI	GAATGC	1 cut(s)	297
Bsp143I	GATC	2 cut(s)	280, 420
BspACI	CCGC	4 cut(s)	238, 276, 288, 492
BspCNI	CTCAG	3 cut(s)	266, 474, 499
BspFNI	CGCG	1 cut(s)	492
BspLI	GGNNCC	2 cut(s)	486, 504
BspMI	ACCTGC	1 cut(s)	56
BspT107I	GGYRCC	1 cut(s)	484
BspTI	CTTAAG	1 cut(s)	85
BsrBI	CCGCTC	1 cut(s)	240
BsrDI	GCAATG	1 cut(s)	150
BsrI	ACTGG	1 cut(s)	37
BssECI	CCNNGG	4 cut(s)	409, 439, 519, 574
BssMI	GATC	2 cut(s)	280, 420
BssT1I	CCWWGG	3 cut(s)	439, 519, 574
Bst2UI	CCWGG	1 cut(s)	410
Bst4CI	ACNGT	3 cut(s)	128, 271, 481
BstAFI	CTTAAG	1 cut(s)	85
BstAPI	GCANNNNNTGC	1 cut(s)	68
BstC8I	GCNNGC	1 cut(s)	295
BstDEI	CTNAG	3 cut(s)	253, 461, 507
BstEII	GGTNACC	1 cut(s)	404
BstF5I	GGATG	3 cut(s)	33, 419, 423
BstFNI	CGCG	1 cut(s)	492
BstKTI	GATC	2 cut(s)	283, 423
BstMBI	GATC	2 cut(s)	280, 420
BstMWI	GCNNNNNNNGC	2 cut(s)	68, 284
BstNI	CCWGG	1 cut(s)	410
BstNSI	RCATGY	1 cut(s)	311
BstPAI	GACNNNNGTC	1 cut(s)	126
BstPI	GGTNACC	1 cut(s)	404
BstSCI	CCNGG	1 cut(s)	408
BstSFI	CTRYAG	1 cut(s)	222
BstUI	CGCG	1 cut(s)	492
BstV1I	GCAGC	4 cut(s)	74, 91, 260, 277
BstV2I	GAAGAC	1 cut(s)	122
BsuI	GTATCC	1 cut(s)	283
BtsCI	GGATG	3 cut(s)	33, 419, 423
BtsIMutI	CAGTG	2 cut(s)	469, 486
BveI	ACCTGC	1 cut(s)	56
Cac8I	GCNNGC	1 cut(s)	295
CaiI	CAGNNNCTG	1 cut(s)	468
Cfr13I	GGNCC	1 cut(s)	503
CseI	GACGC	1 cut(s)	11
Csp6I	GTAC	1 cut(s)	232
CviAII	CATG	2 cut(s)	308, 424
CviJI	RGCY	7 cut(s)	54, 104, 178, 251, 261, 579, 589
CviKI_1	RGCY	7 cut(s)	54, 104, 178, 251, 261, 579, 589
CviQI	GTAC	1 cut(s)	232
DdeI	CTNAG	3 cut(s)	253, 461, 507
DpnI	GATC	2 cut(s)	282, 422
DpnII	GATC	2 cut(s)	280, 420
Eco130I	CCWWGG	3 cut(s)	439, 519, 574
Eco47I	GGWCC	1 cut(s)	503
Eco91I	GGTNACC	1 cut(s)	404
EcoO109I	RGGNCCY	1 cut(s)	503
EcoO65I	GGTNACC	1 cut(s)	404
EcoRI	GAATTC	1 cut(s)	29
EcoRII	CCWGG	1 cut(s)	408
EcoT14I	CCWWGG	3 cut(s)	439, 519, 574
EcoT22I	ATGCAT	1 cut(s)	313
ErhI	CCWWGG	3 cut(s)	439, 519, 574
FaeI	CATG	2 cut(s)	311, 427
FaqI	GGGAC	1 cut(s)	516
FatI	CATG	2 cut(s)	307, 423
FbaI	TGATCA	1 cut(s)	420
Fnu4HI	GCNGC	5 cut(s)	63, 105, 249, 288, 291
FokI	GGATG	3 cut(s)	20, 426, 430
Fsp4HI	GCNGC	5 cut(s)	63, 105, 249, 288, 291
FspBI	CTAG	1 cut(s)	440
GluI	GCNGC	5 cut(s)	63, 105, 249, 288, 291
HgaI	GACGC	1 cut(s)	11
Hin1II	CATG	2 cut(s)	311, 427
HinfI	GANTC	1 cut(s)	444
HphI	GGTGA	2 cut(s)	17, 416
Hpy166II	GTNNAC	1 cut(s)	8
Hpy188I	TCNGA	2 cut(s)	256, 316
Hpy188III	TCNNGA	2 cut(s)	26, 302
Hpy8I	GTNNAC	1 cut(s)	8
HpyAV	CCTTC	2 cut(s)	52, 251
HpyCH4III	ACNGT	3 cut(s)	128, 271, 481
HpyCH4V	TGCA	6 cut(s)	62, 165, 200, 311, 379, 395
HpyF10VI	GCNNNNNNNGC	2 cut(s)	68, 284
HpyF3I	CTNAG	3 cut(s)	253, 461, 507
Hsp92II	CATG	2 cut(s)	311, 427
Ksp22I	TGATCA	1 cut(s)	420
Kzo9I	GATC	2 cut(s)	280, 420
LmnI	GCTCC	1 cut(s)	140
Lsp1109I	GCAGC	4 cut(s)	74, 91, 260, 277
LweI	GCATC	2 cut(s)	320, 325
MaeI	CTAG	1 cut(s)	440
MaeIII	GTNAC	4 cut(s)	94, 404, 475, 494
MalI	GATC	2 cut(s)	282, 422
MbiI	CCGCTC	1 cut(s)	240
MboI	GATC	2 cut(s)	280, 420
MboII	GAAGA	1 cut(s)	122
MluCI	AATT	2 cut(s)	29, 201
MnlI	CCTC	2 cut(s)	262, 493
Mph1103I	ATGCAT	1 cut(s)	313
MseI	TTAA	3 cut(s)	74, 86, 610
MslI	CAYNNNNRTG	3 cut(s)	333, 533, 560
MspA1I	CMGCKG	2 cut(s)	278, 290
MspCI	CTTAAG	1 cut(s)	85
MspR9I	CCNGG	1 cut(s)	410
Mva1269I	GAATGC	1 cut(s)	297
MvaI	CCWGG	1 cut(s)	410
MvnI	CGCG	1 cut(s)	492
MwoI	GCNNNNNNNGC	2 cut(s)	68, 284
NdeII	GATC	2 cut(s)	280, 420
NlaIII	CATG	2 cut(s)	311, 427
NlaIV	GGNNCC	2 cut(s)	486, 504
NmuCI	GTSAC	3 cut(s)	94, 404, 475
NsiI	ATGCAT	1 cut(s)	313
NspI	RCATGY	1 cut(s)	311
OliI	CACNNNNGTG	1 cut(s)	533
PaqCI	CACCTGC	1 cut(s)	56
PctI	GAATGC	1 cut(s)	297
PfeI	GAWTC	1 cut(s)	444
PkrI	GCNGC	5 cut(s)	64, 106, 250, 289, 292
PpuMI	RGGWCCY	1 cut(s)	503
PshAI	GACNNNNGTC	1 cut(s)	126
Psp5II	RGGWCCY	1 cut(s)	503
Psp6I	CCWGG	1 cut(s)	408
PspEI	GGTNACC	1 cut(s)	404
PspGI	CCWGG	1 cut(s)	408
PspN4I	GGNNCC	2 cut(s)	486, 504
PspPI	GGNCC	1 cut(s)	503
PspPPI	RGGWCCY	1 cut(s)	503
PstNI	CAGNNNCTG	1 cut(s)	468
RsaI	GTAC	1 cut(s)	233
RsaNI	GTAC	1 cut(s)	232
RseI	CAYNNNNRTG	3 cut(s)	333, 533, 560
SaqAI	TTAA	3 cut(s)	74, 86, 610
SatI	GCNGC	5 cut(s)	63, 105, 249, 288, 291
Sau3AI	GATC	2 cut(s)	280, 420
Sau96I	GGNCC	1 cut(s)	503
ScaI	AGTACT	1 cut(s)	233
ScrFI	CCNGG	1 cut(s)	410
SetI	ASST	5 cut(s)	70, 106, 180, 345, 508
SfaNI	GCATC	2 cut(s)	320, 325
SfcI	CTRYAG	1 cut(s)	222
SinI	GGWCC	1 cut(s)	503
SmiMI	CAYNNNNRTG	3 cut(s)	333, 533, 560
SmlI	CTYRAG	1 cut(s)	85
SmoI	CTYRAG	1 cut(s)	85
Sse9I	AATT	2 cut(s)	29, 201
SsiI	CCGC	4 cut(s)	238, 276, 288, 492
SspMI	CTAG	1 cut(s)	440
StyD4I	CCNGG	1 cut(s)	408
StyI	CCWWGG	3 cut(s)	439, 519, 574
TaaI	ACNGT	3 cut(s)	128, 271, 481
TasI	AATT	2 cut(s)	29, 201
TatI	WGTACW	1 cut(s)	231
TauI	GCSGC	1 cut(s)	290
TfiI	GAWTC	1 cut(s)	444
Tru1I	TTAA	3 cut(s)	74, 86, 610
Tru9I	TTAA	3 cut(s)	74, 86, 610
TscAI	CASTG	2 cut(s)	469, 486
TseFI	GTSAC	3 cut(s)	94, 404, 475
TseI	GCWGC	4 cut(s)	62, 104, 248, 290
Tsp45I	GTSAC	3 cut(s)	94, 404, 475
TspDTI	ATGAA	2 cut(s)	22, 160
TspRI	CASTG	2 cut(s)	469, 486
Vha464I	CTTAAG	1 cut(s)	85
VpaK11BI	GGWCC	1 cut(s)	503
XapI	RAATTY	1 cut(s)	29
XceI	RCATGY	1 cut(s)	311
XmaJI	CCTAGG	1 cut(s)	439
XspI	CTAG	1 cut(s)	440
ZrmI	AGTACT	1 cut(s)	233
Zsp2I	ATGCAT	1 cut(s)	313

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.