Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0001163

Physical Location & Seq

Genomic Coordinates Forward (+)

7590923 .. 7593111

Gene Structure 2189 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG090500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1152 bp

ATGTGCTTTTCTTTTCATTGCAGAAATACCATCCTTATATCCAAAAAAAAGAAATACCATCCTTCGCGGGTTCTTACCCTGGTTTATCAACCATTTGCACTTATAGCAATGGCAGCACTAGCTTACAATGAAGCAAAGGTTAATACCCGAAAGCGGATCTTAGCTGGATACACAATCTTCTTCCTTGGTACCTTGATGCTAATTGTTGTGGATTTAGCTACGTCTGGTAGTGGAGGAATTGGACCTTATATTGGGATATGTGCCATTAATGGTGCATTAGGGGTTGCAGGTGCCCATGTCGAAGGTGGGATCGTTGGCGACCTATCTTTCATGTGCCCTGAATTCATCCAGTCTTTCTTATCTGGATTGGCTGCAGCTGGTGCTTTAACCTCAGTCTTGAGGCTGATAACCAAGGCGGTCTTTGATAAATACAACAATGGTTTTCGCAAGGGGGCGATGCTATTCCTGTCAATTTCCACATTCATTCAGTTTGTGTGTATTCTTCTATATGCAATTTACTTCCCTAGATTGCCTATAGTAAAGTACTACCGCTCAAAAGCAGCCTCGGAAGGCTCTAAAACTGTATCAGCTGATCTTGCAACTGCTGGAATCCAAACAAAAGCAGACATTGAAGTCCAGAACGGTGCTGCTCTTCCACAAAGATTGAGAAATAAGCAATTGTTCAATCAGAATTTAGATTATGGACTTGGCTTGTTATTGACATATGCTCTGACATTATCAATATTCCCTGGTTTCCTATATGAAAACACTCAAAACCACAAGCTCGGCTCATGGTATCCGCTTGTTCTGATCGCAGTGTACAATGCGGCGGATTTAACATCGAGGTACATACCTCTTGTGAAATGTCTGAAGATGGAATCAAGAAAGGGTCTAATGATTGCAATTCTATTGCGAATGCTTTTCGTGCCAGCATTCTATTTCACAGCAAAATATGGTGACCTGGGATGGATGATGATGCTCACATCACTCCTAGGATTTTCGAATGGCTACTTCACTGTTTGTGTCATGATAGTGGCACCCAAAGGTTACCAGGGATCTGAGCAGAATGCCTTGGGTAACTTGCTTGTACTGTGGCTTTTCTTCGGCGTATTTGCAGGGCTTTCCATTAACTGGTTATGGCTAGCTCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005337 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0015858 GO:0015931 GO:0015932 GO:0016020 GO:0022857 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:1901264 GO:1901505 GO:1901642

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nucleoside_tran

Protein Analysis

383

Amino Acids

42.17

Weight (kDa)

9.55

Isoelectric Point (pI)

26.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nucleoside_tran	PF01733	94 - 380	1.4e-31	Nucleoside transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001163)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61630 AT4G05110 AT4G05110 AT4G05110 AT4G05120 AT4G05120 AT4G05130 AT4G05140
fragaria_vesca	FvH4_3g03740 FvH4_3g03740 FvH4_3g03740 FvH4_3g03740 FvH4_3g03750 FvH4_5g10501
malus_domestica	MD05G1326900.v1.1 MD10G1305000.v1.1
prunus_persica	Prupe.4G034600_v2.0.a1
pyrus_communis	pycom05g30120 pycom10g25750
rosa_chinensis	RchiOBHm_Chr5g0005801 RchiOBHm_Chr5g0005811 RchiOBHm_Chr5g0005821 RchiOBHm_Chr7g0187631
rosa_laevigata	RLG00000004764 RLG00000031327 RLG00000031328 RLG00000031329
rosa_multiflora	Rmu_sc0002694.1_g000001
rosa_roxburghii	Rroxscaffold_1G00070040 Rroxscaffold_1G00070050 Rroxscaffold_1G00070060 Rroxscaffold_3G00267210
rosa_rugosa	Rorug04G0418200 Rorug04G0418300 Rorug04G0418400 Rorug04G0418500 Rorug04G0418500 Rorug04G0418600 Rorug04G0418700 Rorug06G0483300
rosa_samantha	Rh5AG045700 Rh5AG045800 Rh5AG045900 Rh5BG044400 Rh5BG044600 Rh5CG053200 Rh5CG053400 Rh5CG053500 Rh5DG044300 Rh7AG088200 Rh7BG089500 Rh7CG088800 Rh7DG090500
rosa_wichuraiana	Rw0G002660 Rw5G004600 Rw5G004610 Rw5G004620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	278
AasI	GACNNNNNNGTC	1 cut(s)	632
Acc36I	ACCTGC	1 cut(s)	278
Acc65I	GGTACC	1 cut(s)	188
AccB1I	GGYRCC	3 cut(s)	188, 290, 1036
AccB7I	CCANNNNNTGG	1 cut(s)	1131
AccBSI	CCGCTC	1 cut(s)	552
AccII	CGCG	1 cut(s)	67
AciI	CCGC	7 cut(s)	67, 154, 416, 550, 800, 827, 830
AclWI	GGATC	3 cut(s)	164, 317, 1063
AcsI	RAATTY	2 cut(s)	341, 691
AcuI	CTGAAG	1 cut(s)	890
AfaI	GTAC	5 cut(s)	190, 545, 821, 848, 1089
AfiI	CCNNNNNNNGG	3 cut(s)	153, 251, 1131
AgsI	TTSAA	2 cut(s)	632, 685
AjnI	CCWGG	4 cut(s)	78, 748, 960, 1050
AluBI	AGCT	7 cut(s)	122, 164, 218, 377, 590, 784, 1145
AluI	AGCT	7 cut(s)	122, 164, 218, 377, 590, 784, 1145
AlwI	GGATC	3 cut(s)	164, 317, 1063
ApeKI	GCWGC	5 cut(s)	113, 371, 374, 560, 647
ApoI	RAATTY	2 cut(s)	341, 691
AseI	ATTAAT	1 cut(s)	267
Asp718I	GGTACC	1 cut(s)	188
AspA2I	CCTAGG	1 cut(s)	991
AspS9I	GGNCC	1 cut(s)	242
AsuHPI	GGTGA	1 cut(s)	968
AsuII	TTCGAA	1 cut(s)	1001
AsuNHI	GCTAGC	1 cut(s)	1141
AvaII	GGWCC	1 cut(s)	242
AvrII	CCTAGG	1 cut(s)	991
BaeGI	GKGCMC	2 cut(s)	295, 338
BanI	GGYRCC	3 cut(s)	188, 290, 1036
BbvI	GCAGC	5 cut(s)	125, 358, 386, 572, 634
BccI	CCATC	4 cut(s)	38, 66, 868, 960
BciT130I	CCWGG	4 cut(s)	80, 750, 962, 1052
BciVI	GTATCC	2 cut(s)	161, 807
BfaI	CTAG	4 cut(s)	119, 525, 992, 1142
BfmI	CTRYAG	2 cut(s)	372, 534
BfuAI	ACCTGC	1 cut(s)	278
BfuI	GTATCC	2 cut(s)	161, 807
BisI	GCNGC	6 cut(s)	114, 372, 375, 561, 648, 828
BlnI	CCTAGG	1 cut(s)	991
BlsI	GCNGC	6 cut(s)	115, 373, 376, 562, 649, 829
BmcAI	AGTACT	1 cut(s)	545
Bme1390I	CCNGG	4 cut(s)	80, 750, 962, 1052
Bme18I	GGWCC	1 cut(s)	242
BmgT120I	GGNCC	1 cut(s)	242
BmiI	GGNNCC	3 cut(s)	190, 292, 1038
BmrFI	CCNGG	4 cut(s)	80, 750, 962, 1052
BmsI	GCATC	3 cut(s)	186, 447, 966
BmtI	GCTAGC	1 cut(s)	1145
Bpu14I	TTCGAA	1 cut(s)	1001
BpuEI	CTTGAG	1 cut(s)	418
BsaJI	CCNNGG	9 cut(s)	78, 184, 411, 564, 748, 961, 991, 1051, 1071
Bsc4I	CCNNNNNNNGG	3 cut(s)	153, 251, 1131
Bse1I	ACTGG	2 cut(s)	349, 1136
Bse3DI	GCAATG	2 cut(s)	16, 114
BseBI	CCWGG	4 cut(s)	80, 750, 962, 1052
BseDI	CCNNGG	9 cut(s)	78, 184, 411, 564, 748, 961, 991, 1051, 1071
BseGI	GGATG	5 cut(s)	30, 58, 345, 971, 975
BseLI	CCNNNNNNNGG	3 cut(s)	153, 251, 1131
BseMI	GCAATG	2 cut(s)	16, 114
BseMII	CTCAG	2 cut(s)	405, 1050
BseNI	ACTGG	2 cut(s)	349, 1136
BseSI	GKGCMC	2 cut(s)	295, 338
BseXI	GCAGC	5 cut(s)	125, 358, 386, 572, 634
Bsh1236I	CGCG	1 cut(s)	67
BshNI	GGYRCC	3 cut(s)	188, 290, 1036
BslI	CCNNNNNNNGG	3 cut(s)	153, 251, 1131
BsmI	GAATGC	3 cut(s)	921, 932, 1072
Bsp119I	TTCGAA	1 cut(s)	1001
Bsp1286I	GDGCHC	2 cut(s)	295, 338
Bsp1407I	TGTACA	1 cut(s)	819
Bsp143I	GATC	5 cut(s)	156, 309, 592, 810, 1055
BspACI	CCGC	7 cut(s)	67, 154, 416, 550, 800, 827, 830
BspCNI	CTCAG	2 cut(s)	404, 1051
BspFNI	CGCG	1 cut(s)	67
BspHI	TCATGA	1 cut(s)	1026
BspLI	GGNNCC	3 cut(s)	190, 292, 1038
BspMAI	CTGCAG	1 cut(s)	376
BspMI	ACCTGC	1 cut(s)	278
BspOI	GCTAGC	1 cut(s)	1145
BspPI	GGATC	3 cut(s)	164, 317, 1063
BspQI	GCTCTTC	1 cut(s)	657
BspT104I	TTCGAA	1 cut(s)	1001
BspT107I	GGYRCC	3 cut(s)	188, 290, 1036
BsrBI	CCGCTC	1 cut(s)	552
BsrDI	GCAATG	2 cut(s)	16, 114
BsrGI	TGTACA	1 cut(s)	819
BsrI	ACTGG	2 cut(s)	349, 1136
BssECI	CCNNGG	9 cut(s)	78, 184, 411, 564, 748, 961, 991, 1051, 1071
BssMI	GATC	5 cut(s)	156, 309, 592, 810, 1055
BssT1I	CCWWGG	4 cut(s)	184, 411, 991, 1071
Bst2UI	CCWGG	4 cut(s)	80, 750, 962, 1052
Bst4CI	ACNGT	4 cut(s)	583, 644, 1018, 1092
Bst6I	CTCTTC	1 cut(s)	657
BstAPI	GCANNNNNTGC	1 cut(s)	380
BstAUI	TGTACA	1 cut(s)	819
BstBI	TTCGAA	1 cut(s)	1001
BstC8I	GCNNGC	2 cut(s)	930, 1143
BstDEI	CTNAG	3 cut(s)	160, 391, 1059
BstEII	GGTNACC	2 cut(s)	956, 1046
BstF5I	GGATG	5 cut(s)	30, 58, 345, 971, 975
BstFNI	CGCG	1 cut(s)	67
BstKTI	GATC	5 cut(s)	159, 312, 595, 813, 1058
BstMBI	GATC	5 cut(s)	156, 309, 592, 810, 1055
BstMWI	GCNNNNNNNGC	6 cut(s)	104, 113, 119, 380, 596, 925
BstNI	CCWGG	4 cut(s)	80, 750, 962, 1052
BstPI	GGTNACC	2 cut(s)	956, 1046
BstSCI	CCNGG	4 cut(s)	78, 748, 960, 1050
BstSFI	CTRYAG	2 cut(s)	372, 534
BstSLI	GKGCMC	2 cut(s)	295, 338
BstUI	CGCG	1 cut(s)	67
BstV1I	GCAGC	5 cut(s)	125, 358, 386, 572, 634
BstX2I	RGATCY	2 cut(s)	156, 1055
BstYI	RGATCY	2 cut(s)	156, 1055
BsuI	GTATCC	2 cut(s)	161, 807
BtgZI	GCGATG	1 cut(s)	470
BtsCI	GGATG	5 cut(s)	30, 58, 345, 971, 975
BtsI	GCAGTG	1 cut(s)	822
BtsIMutI	CAGTG	2 cut(s)	822, 1014
BveI	ACCTGC	1 cut(s)	278
Cac8I	GCNNGC	2 cut(s)	930, 1143
CciI	TCATGA	1 cut(s)	1026
Cfr13I	GGNCC	1 cut(s)	242
Csp6I	GTAC	5 cut(s)	189, 544, 820, 847, 1088
CspCI	CAANNNNNGTGG	2 cut(s)	645, 680
CviAII	CATG	4 cut(s)	296, 331, 792, 1027
CviQI	GTAC	5 cut(s)	189, 544, 820, 847, 1088
DdeI	CTNAG	3 cut(s)	160, 391, 1059
DpnI	GATC	5 cut(s)	158, 311, 594, 812, 1057
DpnII	GATC	5 cut(s)	156, 309, 592, 810, 1055
DrdI	GACNNNNNNGTC	1 cut(s)	632
DseDI	GACNNNNNNGTC	1 cut(s)	632
Eam1104I	CTCTTC	1 cut(s)	657
EarI	CTCTTC	1 cut(s)	657
EciI	GGCGGA	1 cut(s)	845
Eco130I	CCWWGG	4 cut(s)	184, 411, 991, 1071
Eco47I	GGWCC	1 cut(s)	242
Eco57I	CTGAAG	1 cut(s)	890
Eco91I	GGTNACC	2 cut(s)	956, 1046
EcoO65I	GGTNACC	2 cut(s)	956, 1046
EcoRI	GAATTC	1 cut(s)	341
EcoRII	CCWGG	4 cut(s)	78, 748, 960, 1050
EcoT14I	CCWWGG	4 cut(s)	184, 411, 991, 1071
ErhI	CCWWGG	4 cut(s)	184, 411, 991, 1071
FaeI	CATG	4 cut(s)	299, 334, 795, 1030
FalI	AAGNNNNNCTT	4 cut(s)	143, 175, 404, 436
FatI	CATG	4 cut(s)	295, 330, 791, 1026
FauI	CCCGC	1 cut(s)	60
FauNDI	CATATG	1 cut(s)	724
Fnu4HI	GCNGC	6 cut(s)	114, 372, 375, 561, 648, 828
FokI	GGATG	5 cut(s)	17, 45, 332, 978, 982
Fsp4HI	GCNGC	6 cut(s)	114, 372, 375, 561, 648, 828
FspBI	CTAG	4 cut(s)	119, 525, 992, 1142
GluI	GCNGC	6 cut(s)	114, 372, 375, 561, 648, 828
Hin1II	CATG	4 cut(s)	299, 334, 795, 1030
HinfI	GANTC	2 cut(s)	609, 878
HphI	GGTGA	1 cut(s)	968
Hpy166II	GTNNAC	1 cut(s)	820
Hpy188I	TCNGA	6 cut(s)	568, 690, 732, 810, 870, 1060
Hpy188III	TCNNGA	5 cut(s)	363, 397, 637, 882, 1027
Hpy8I	GTNNAC	1 cut(s)	820
HpyAV	CCTTC	3 cut(s)	72, 296, 563
HpyCH4III	ACNGT	4 cut(s)	583, 644, 1018, 1092
HpyCH4IV	ACGT	1 cut(s)	221
HpyCH4V	TGCA	9 cut(s)	21, 98, 275, 287, 374, 512, 599, 902, 1115
HpyF10VI	GCNNNNNNNGC	6 cut(s)	104, 113, 119, 380, 596, 925
HpyF3I	CTNAG	3 cut(s)	160, 391, 1059
HpySE526I	ACGT	1 cut(s)	221
Hsp92II	CATG	4 cut(s)	299, 334, 795, 1030
KpnI	GGTACC	1 cut(s)	192
Kzo9I	GATC	5 cut(s)	156, 309, 592, 810, 1055
LguI	GCTCTTC	1 cut(s)	657
Lsp1109I	GCAGC	5 cut(s)	125, 358, 386, 572, 634
LweI	GCATC	3 cut(s)	186, 447, 966
MaeI	CTAG	4 cut(s)	119, 525, 992, 1142
MaeII	ACGT	1 cut(s)	221
MaeIII	GTNAC	3 cut(s)	956, 1046, 1076
MalI	GATC	5 cut(s)	158, 311, 594, 812, 1057
MbiI	CCGCTC	1 cut(s)	552
MboI	GATC	5 cut(s)	156, 309, 592, 810, 1055
MboII	GAAGA	6 cut(s)	169, 172, 494, 644, 883, 1093
MfeI	CAATTG	1 cut(s)	677
MflI	RGATCY	2 cut(s)	156, 1055
MhlI	GDGCHC	2 cut(s)	295, 338
MluCI	AATT	8 cut(s)	201, 237, 341, 471, 513, 677, 691, 903
MnlI	CCTC	6 cut(s)	227, 393, 400, 574, 837, 864
MseI	TTAA	5 cut(s)	141, 267, 386, 836, 1128
MslI	CAYNNNNRTG	1 cut(s)	1031
MspA1I	CMGCKG	2 cut(s)	377, 590
MspR9I	CCNGG	4 cut(s)	80, 750, 962, 1052
MunI	CAATTG	1 cut(s)	677
Mva1269I	GAATGC	3 cut(s)	921, 932, 1072
MvaI	CCWGG	4 cut(s)	80, 750, 962, 1052
MvnI	CGCG	1 cut(s)	67
MwoI	GCNNNNNNNGC	6 cut(s)	104, 113, 119, 380, 596, 925
NdeI	CATATG	1 cut(s)	724
NdeII	GATC	5 cut(s)	156, 309, 592, 810, 1055
NheI	GCTAGC	1 cut(s)	1141
NlaIII	CATG	4 cut(s)	299, 334, 795, 1030
NlaIV	GGNNCC	3 cut(s)	190, 292, 1038
NmeAIII	GCCGAG	1 cut(s)	765
NmuCI	GTSAC	1 cut(s)	956
NspV	TTCGAA	1 cut(s)	1001
PagI	TCATGA	1 cut(s)	1026
PaqCI	CACCTGC	1 cut(s)	278
PciSI	GCTCTTC	1 cut(s)	657
PctI	GAATGC	3 cut(s)	921, 932, 1072
PfeI	GAWTC	2 cut(s)	609, 878
PflMI	CCANNNNNTGG	1 cut(s)	1131
PkrI	GCNGC	6 cut(s)	115, 373, 376, 562, 649, 829
PshBI	ATTAAT	1 cut(s)	267
Psp6I	CCWGG	4 cut(s)	78, 748, 960, 1050
PspEI	GGTNACC	2 cut(s)	956, 1046
PspGI	CCWGG	4 cut(s)	78, 748, 960, 1050
PspN4I	GGNNCC	3 cut(s)	190, 292, 1038
PspPI	GGNCC	1 cut(s)	242
PstI	CTGCAG	1 cut(s)	376
PsuI	RGATCY	2 cut(s)	156, 1055
PvuII	CAGCTG	2 cut(s)	377, 590
RsaI	GTAC	5 cut(s)	190, 545, 821, 848, 1089
RsaNI	GTAC	5 cut(s)	189, 544, 820, 847, 1088
RseI	CAYNNNNRTG	1 cut(s)	1031
SapI	GCTCTTC	1 cut(s)	657
SaqAI	TTAA	5 cut(s)	141, 267, 386, 836, 1128
SatI	GCNGC	6 cut(s)	114, 372, 375, 561, 648, 828
Sau3AI	GATC	5 cut(s)	156, 309, 592, 810, 1055
Sau96I	GGNCC	1 cut(s)	242
ScaI	AGTACT	1 cut(s)	545
ScrFI	CCNGG	4 cut(s)	80, 750, 962, 1052
SduI	GDGCHC	2 cut(s)	295, 338
SfaNI	GCATC	3 cut(s)	186, 447, 966
SfcI	CTRYAG	2 cut(s)	372, 534
SfuI	TTCGAA	1 cut(s)	1001
SinI	GGWCC	1 cut(s)	242
SmiMI	CAYNNNNRTG	1 cut(s)	1031
SmlI	CTYRAG	1 cut(s)	397
SmoI	CTYRAG	1 cut(s)	397
Sse9I	AATT	8 cut(s)	201, 237, 341, 471, 513, 677, 691, 903
SsiI	CCGC	7 cut(s)	67, 154, 416, 550, 800, 827, 830
SspI	AATATT	1 cut(s)	744
SspMI	CTAG	4 cut(s)	119, 525, 992, 1142
StyD4I	CCNGG	4 cut(s)	78, 748, 960, 1050
StyI	CCWWGG	4 cut(s)	184, 411, 991, 1071
TaaI	ACNGT	4 cut(s)	583, 644, 1018, 1092
TaiI	ACGT	1 cut(s)	224
TaqI	TCGA	3 cut(s)	300, 842, 1001
TasI	AATT	8 cut(s)	201, 237, 341, 471, 513, 677, 691, 903
TatI	WGTACW	3 cut(s)	543, 819, 1087
TauI	GCSGC	1 cut(s)	830
TfiI	GAWTC	2 cut(s)	609, 878
Tru1I	TTAA	5 cut(s)	141, 267, 386, 836, 1128
Tru9I	TTAA	5 cut(s)	141, 267, 386, 836, 1128
TscAI	CASTG	2 cut(s)	822, 1021
TseFI	GTSAC	1 cut(s)	956
TseI	GCWGC	5 cut(s)	113, 371, 374, 560, 647
Tsp45I	GTSAC	1 cut(s)	956
TspDTI	ATGAA	6 cut(s)	5, 144, 319, 334, 472, 777
TspRI	CASTG	2 cut(s)	822, 1021
Van91I	CCANNNNNTGG	1 cut(s)	1131
VpaK11BI	GGWCC	1 cut(s)	242
VspI	ATTAAT	1 cut(s)	267
XapI	RAATTY	2 cut(s)	341, 691
XcmI	CCANNNNNNNNNTGG	1 cut(s)	302
XmaJI	CCTAGG	1 cut(s)	991
XspI	CTAG	4 cut(s)	119, 525, 992, 1142
ZrmI	AGTACT	1 cut(s)	545

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.