Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0001163

Physical Location & Seq

Genomic Coordinates Forward (+)

3542229 .. 3544363

Gene Structure 2135 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG044600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGCAGGCAGTAGCCATGTCTAAGACTCAAACAATGCTTGAGGGCCAATATAAAGCTATGGCAGTTTGTTGGGTTCTTGAACTAGGGACTCTCTTCGCGTGGAACAGTATTGTGACAATAGGAGACTACTATTATAATCTGTTTCCTAAATATCATCCTTCGCAGGTTTTTACCCTTCTTTATCAGCCATTTGCCCTTGCAACATTGGCAGTACTTTCATACAATGACTCAAAAATTGATACAATAAGAAAGAGGATCTTAGTTGATTACACACTGTTCCTCCTTGATACCCCTATGCTAATATTCGTGGATTTAGCTACATCTGGGACTGGAGGATTTGGATATTTCATCGCTACATGCGCAATTGTTGGTGCATTTGGGGTTGCAGGTGGAAATGTTGAAGGTGCAGTTATGGGTGAACTATCTTTTATGCGTCCTGAATTCATCCAGTCCTTCTTTGCTGGCTTGGGTGCAGCAGGTGCTTTAAGTTCTGCCTTAAGATTAGTGACAAAAGCTGCCTTCGAGAAATATGACAACGGTCTTCGCAAGGGAGCAATGTTGTTCTTGGCAACTTCCACATTCATTGAGCTTCTCTGTATACTTTTATATGCAATTTACTTCCCAAGATTGCCTATAGTAAAGTACTACCGCTCAAAGGCAGCCTCAGAAGGCTCTACAACTGTATCCGCTGATCTCGCCGCTGCTGGCATTCAGGAACATGCATCAGATATAGAAGGACCTGAGCAAAATGCCTTGGGGAACATTCTTGTGCTGTGTCTTTTGTCAGGCATATTTTTGGGGGGTTGCCTTGGCTGGTTATGGCTCATTGGTAAAGACACATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005337 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0015858 GO:0015931 GO:0015932 GO:0016020 GO:0022857 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:1901264 GO:1901505 GO:1901642

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nucleoside_tran

Protein Analysis

281

Amino Acids

30.51

Weight (kDa)

5.43

Isoelectric Point (pI)

30.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nucleoside_tran	PF01733	127 - 251	6.5e-10	Nucleoside transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001163)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61630 AT4G05110 AT4G05110 AT4G05110 AT4G05120 AT4G05120 AT4G05130 AT4G05140
fragaria_vesca	FvH4_3g03740 FvH4_3g03740 FvH4_3g03740 FvH4_3g03740 FvH4_3g03750 FvH4_5g10501
malus_domestica	MD05G1326900.v1.1 MD10G1305000.v1.1
prunus_persica	Prupe.4G034600_v2.0.a1
pyrus_communis	pycom05g30120 pycom10g25750
rosa_chinensis	RchiOBHm_Chr5g0005801 RchiOBHm_Chr5g0005811 RchiOBHm_Chr5g0005821 RchiOBHm_Chr7g0187631
rosa_laevigata	RLG00000004764 RLG00000031327 RLG00000031328 RLG00000031329
rosa_multiflora	Rmu_sc0002694.1_g000001
rosa_roxburghii	Rroxscaffold_1G00070040 Rroxscaffold_1G00070050 Rroxscaffold_1G00070060 Rroxscaffold_3G00267210
rosa_rugosa	Rorug04G0418200 Rorug04G0418300 Rorug04G0418400 Rorug04G0418500 Rorug04G0418500 Rorug04G0418600 Rorug04G0418700 Rorug06G0483300
rosa_samantha	Rh5AG045700 Rh5AG045800 Rh5AG045900 Rh5BG044400 Rh5BG044600 Rh5CG053200 Rh5CG053400 Rh5CG053500 Rh5DG044300 Rh7AG088200 Rh7BG089500 Rh7CG088800 Rh7DG090500
rosa_wichuraiana	Rw0G002660 Rw5G004600 Rw5G004610 Rw5G004620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	135
AarI	CACCTGC	2 cut(s)	377, 467
Acc16I	TGCGCA	1 cut(s)	361
Acc36I	ACCTGC	3 cut(s)	154, 377, 467
AccBSI	CCGCTC	1 cut(s)	651
AccI	GTMKAC	1 cut(s)	598
AccII	CGCG	1 cut(s)	98
AciI	CCGC	3 cut(s)	649, 687, 699
AclWI	GGATC	1 cut(s)	263
AcsI	RAATTY	1 cut(s)	440
AfaI	GTAC	2 cut(s)	213, 644
AfiI	CCNNNNNNNGG	1 cut(s)	655
AflII	CTTAAG	1 cut(s)	496
AgsI	TTSAA	2 cut(s)	80, 401
AluBI	AGCT	4 cut(s)	56, 317, 515, 589
AluI	AGCT	4 cut(s)	56, 317, 515, 589
Alw26I	GTCTC	1 cut(s)	117
AlwI	GGATC	1 cut(s)	263
AoxI	GGCC	1 cut(s)	43
ApeKI	GCWGC	4 cut(s)	473, 515, 659, 701
ApoI	RAATTY	1 cut(s)	440
AspLEI	GCGC	1 cut(s)	362
AspS9I	GGNCC	2 cut(s)	43, 737
AsuHPI	GGTGA	1 cut(s)	428
AvaII	GGWCC	1 cut(s)	737
BaeI	ACNNNNGTAYC	2 cut(s)	666, 699
BbsI	GAAGAC	1 cut(s)	533
BbvI	GCAGC	4 cut(s)	485, 502, 671, 688
BciVI	GTATCC	1 cut(s)	694
BcoDI	GTCTC	1 cut(s)	117
BfaI	CTAG	1 cut(s)	83
BfmI	CTRYAG	1 cut(s)	633
BfrI	CTTAAG	1 cut(s)	496
BfuAI	ACCTGC	3 cut(s)	154, 377, 467
BfuI	GTATCC	1 cut(s)	694
BisI	GCNGC	5 cut(s)	474, 516, 660, 699, 702
BlsI	GCNGC	5 cut(s)	475, 517, 661, 700, 703
BmcAI	AGTACT	2 cut(s)	213, 644
Bme18I	GGWCC	1 cut(s)	737
BmgT120I	GGNCC	2 cut(s)	43, 737
BmsI	GCATC	1 cut(s)	731
BoxI	GACNNNNGTC	1 cut(s)	537
BpiI	GAAGAC	1 cut(s)	533
BpmI	CTGGAG	1 cut(s)	351
Bpu10I	CCTNAGC	1 cut(s)	741
BpuEI	CTTGAG	1 cut(s)	59
BsaJI	CCNNGG	2 cut(s)	753, 808
BsaXI	ACNNNNNCTCC	2 cut(s)	264, 294
Bsc4I	CCNNNNNNNGG	1 cut(s)	655
Bse1I	ACTGG	2 cut(s)	334, 448
Bse3DI	GCAATG	1 cut(s)	561
BseDI	CCNNGG	2 cut(s)	753, 808
BseGI	GGATG	2 cut(s)	154, 444
BseLI	CCNNNNNNNGG	1 cut(s)	655
BseMI	GCAATG	1 cut(s)	561
BseMII	CTCAG	2 cut(s)	678, 732
BseNI	ACTGG	2 cut(s)	334, 448
BseXI	GCAGC	4 cut(s)	485, 502, 671, 688
BsgI	GTGCAG	2 cut(s)	426, 492
Bsh1236I	CGCG	1 cut(s)	98
BshFI	GGCC	1 cut(s)	45
BslFI	GGGAC	2 cut(s)	100, 340
BslI	CCNNNNNNNGG	1 cut(s)	655
BsmAI	GTCTC	1 cut(s)	117
BsmFI	GGGAC	2 cut(s)	100, 340
BsmI	GAATGC	1 cut(s)	708
BsnI	GGCC	1 cut(s)	45
Bsp143I	GATC	2 cut(s)	255, 691
BspACI	CCGC	3 cut(s)	649, 687, 699
BspANI	GGCC	1 cut(s)	45
BspCNI	CTCAG	2 cut(s)	677, 733
BspFNI	CGCG	1 cut(s)	98
BspMI	ACCTGC	3 cut(s)	154, 377, 467
BspPI	GGATC	1 cut(s)	263
BspTI	CTTAAG	1 cut(s)	496
BsrBI	CCGCTC	1 cut(s)	651
BsrDI	GCAATG	1 cut(s)	561
BsrI	ACTGG	2 cut(s)	334, 448
BssECI	CCNNGG	2 cut(s)	753, 808
BssMI	GATC	2 cut(s)	255, 691
BssNAI	GTATAC	1 cut(s)	599
BssT1I	CCWWGG	2 cut(s)	753, 808
Bst1107I	GTATAC	1 cut(s)	599
Bst4CI	ACNGT	4 cut(s)	107, 276, 539, 682
Bst6I	CTCTTC	1 cut(s)	98
BstAFI	CTTAAG	1 cut(s)	496
BstAPI	GCANNNNNTGC	1 cut(s)	479
BstC8I	GCNNGC	3 cut(s)	6, 463, 706
BstDEI	CTNAG	4 cut(s)	21, 259, 664, 741
BstF5I	GGATG	2 cut(s)	154, 444
BstFNI	CGCG	1 cut(s)	98
BstHHI	GCGC	1 cut(s)	362
BstKTI	GATC	2 cut(s)	258, 694
BstMAI	GTCTC	1 cut(s)	117
BstMBI	GATC	2 cut(s)	255, 691
BstMWI	GCNNNNNNNGC	4 cut(s)	206, 359, 479, 695
BstNSI	RCATGY	2 cut(s)	360, 722
BstPAI	GACNNNNGTC	1 cut(s)	537
BstSFI	CTRYAG	1 cut(s)	633
BstUI	CGCG	1 cut(s)	98
BstV1I	GCAGC	4 cut(s)	485, 502, 671, 688
BstV2I	GAAGAC	1 cut(s)	533
BstX2I	RGATCY	1 cut(s)	255
BstYI	RGATCY	1 cut(s)	255
BstZ17I	GTATAC	1 cut(s)	599
BsuI	GTATCC	1 cut(s)	694
BsuRI	GGCC	1 cut(s)	45
BtgZI	GCGATG	1 cut(s)	334
BtsCI	GGATG	2 cut(s)	154, 444
BtsIMutI	CAGTG	1 cut(s)	272
BveI	ACCTGC	3 cut(s)	154, 377, 467
Cac8I	GCNNGC	3 cut(s)	6, 463, 706
CfoI	GCGC	1 cut(s)	362
Cfr13I	GGNCC	2 cut(s)	43, 737
CseI	GACGC	1 cut(s)	422
Csp6I	GTAC	2 cut(s)	212, 643
CspCI	CAANNNNNGTGG	2 cut(s)	565, 600
CviAII	CATG	3 cut(s)	16, 357, 719
CviQI	GTAC	2 cut(s)	212, 643
DdeI	CTNAG	4 cut(s)	21, 259, 664, 741
DpnI	GATC	2 cut(s)	257, 693
DpnII	GATC	2 cut(s)	255, 691
Eam1104I	CTCTTC	1 cut(s)	98
EarI	CTCTTC	1 cut(s)	98
Eco130I	CCWWGG	2 cut(s)	753, 808
Eco47I	GGWCC	1 cut(s)	737
EcoO109I	RGGNCCY	1 cut(s)	737
EcoRI	GAATTC	1 cut(s)	440
EcoT14I	CCWWGG	2 cut(s)	753, 808
EcoT22I	ATGCAT	1 cut(s)	724
ErhI	CCWWGG	2 cut(s)	753, 808
FaeI	CATG	3 cut(s)	19, 360, 722
FalI	AAGNNNNNCTT	2 cut(s)	242, 274
FaqI	GGGAC	2 cut(s)	100, 340
FatI	CATG	3 cut(s)	15, 356, 718
FblI	GTMKAC	1 cut(s)	598
Fnu4HI	GCNGC	5 cut(s)	474, 516, 660, 699, 702
FokI	GGATG	2 cut(s)	141, 431
Fsp4HI	GCNGC	5 cut(s)	474, 516, 660, 699, 702
FspBI	CTAG	1 cut(s)	83
FspI	TGCGCA	1 cut(s)	361
GlaI	GCGC	1 cut(s)	361
GluI	GCNGC	5 cut(s)	474, 516, 660, 699, 702
GsuI	CTGGAG	1 cut(s)	351
HaeIII	GGCC	1 cut(s)	45
HgaI	GACGC	1 cut(s)	422
HhaI	GCGC	1 cut(s)	362
Hin1II	CATG	3 cut(s)	19, 360, 722
Hin6I	GCGC	1 cut(s)	360
HinP1I	GCGC	1 cut(s)	360
HinfI	GANTC	3 cut(s)	25, 88, 227
HphI	GGTGA	1 cut(s)	428
Hpy166II	GTNNAC	2 cut(s)	419, 599
Hpy188I	TCNGA	2 cut(s)	667, 727
Hpy188III	TCNNGA	4 cut(s)	77, 437, 523, 713
Hpy8I	GTNNAC	2 cut(s)	419, 599
HpyAV	CCTTC	7 cut(s)	168, 185, 395, 463, 529, 662, 728
HpyCH4III	ACNGT	4 cut(s)	107, 276, 539, 682
HpyCH4V	TGCA	8 cut(s)	4, 200, 374, 386, 407, 473, 611, 722
HpyF10VI	GCNNNNNNNGC	4 cut(s)	206, 359, 479, 695
HpyF3I	CTNAG	4 cut(s)	21, 259, 664, 741
Hsp92II	CATG	3 cut(s)	19, 360, 722
HspAI	GCGC	1 cut(s)	360
Kzo9I	GATC	2 cut(s)	255, 691
LmnI	GCTCC	1 cut(s)	551
Lsp1109I	GCAGC	4 cut(s)	485, 502, 671, 688
LweI	GCATC	1 cut(s)	731
MaeI	CTAG	1 cut(s)	83
MaeIII	GTNAC	2 cut(s)	112, 505
MalI	GATC	2 cut(s)	257, 693
MbiI	CCGCTC	1 cut(s)	651
MboI	GATC	2 cut(s)	255, 691
MboII	GAAGA	2 cut(s)	85, 533
MfeI	CAATTG	1 cut(s)	363
MflI	RGATCY	1 cut(s)	255
MluCI	AATT	4 cut(s)	234, 363, 440, 612
MlyI	GAGTC	3 cut(s)	19, 82, 221
MnlI	CCTC	5 cut(s)	34, 246, 290, 326, 673
Mph1103I	ATGCAT	1 cut(s)	724
MseI	TTAA	3 cut(s)	485, 497, 844
MslI	CAYNNNNRTG	1 cut(s)	767
MspA1I	CMGCKG	2 cut(s)	689, 701
MspCI	CTTAAG	1 cut(s)	496
MunI	CAATTG	1 cut(s)	363
Mva1269I	GAATGC	1 cut(s)	708
MvnI	CGCG	1 cut(s)	98
MwoI	GCNNNNNNNGC	4 cut(s)	206, 359, 479, 695
NdeII	GATC	2 cut(s)	255, 691
NlaIII	CATG	3 cut(s)	19, 360, 722
NmuCI	GTSAC	2 cut(s)	112, 505
NsbI	TGCGCA	1 cut(s)	361
NsiI	ATGCAT	1 cut(s)	724
NspI	RCATGY	2 cut(s)	360, 722
PaqCI	CACCTGC	2 cut(s)	377, 467
PctI	GAATGC	1 cut(s)	708
PkrI	GCNGC	5 cut(s)	475, 517, 661, 700, 703
PleI	GAGTC	3 cut(s)	19, 82, 221
PpsI	GAGTC	3 cut(s)	19, 82, 221
PpuMI	RGGWCCY	1 cut(s)	737
PshAI	GACNNNNGTC	1 cut(s)	537
PsiI	TTATAA	1 cut(s)	135
Psp5II	RGGWCCY	1 cut(s)	737
PspPI	GGNCC	2 cut(s)	43, 737
PspPPI	RGGWCCY	1 cut(s)	737
PsuI	RGATCY	1 cut(s)	255
RsaI	GTAC	2 cut(s)	213, 644
RsaNI	GTAC	2 cut(s)	212, 643
RseI	CAYNNNNRTG	1 cut(s)	767
SaqAI	TTAA	3 cut(s)	485, 497, 844
SatI	GCNGC	5 cut(s)	474, 516, 660, 699, 702
Sau3AI	GATC	2 cut(s)	255, 691
Sau96I	GGNCC	2 cut(s)	43, 737
ScaI	AGTACT	2 cut(s)	213, 644
SchI	GAGTC	3 cut(s)	19, 82, 221
SetI	ASST	9 cut(s)	58, 168, 319, 391, 406, 481, 517, 591, 742
SfaNI	GCATC	1 cut(s)	731
SfcI	CTRYAG	1 cut(s)	633
SinI	GGWCC	1 cut(s)	737
SmiMI	CAYNNNNRTG	1 cut(s)	767
SmlI	CTYRAG	2 cut(s)	38, 496
SmoI	CTYRAG	2 cut(s)	38, 496
Sse9I	AATT	4 cut(s)	234, 363, 440, 612
SsiI	CCGC	3 cut(s)	649, 687, 699
SspI	AATATT	1 cut(s)	303
SspMI	CTAG	1 cut(s)	83
StyI	CCWWGG	2 cut(s)	753, 808
TaaI	ACNGT	4 cut(s)	107, 276, 539, 682
TaqI	TCGA	1 cut(s)	522
TasI	AATT	4 cut(s)	234, 363, 440, 612
TatI	WGTACW	2 cut(s)	211, 642
TauI	GCSGC	1 cut(s)	701
Tru1I	TTAA	3 cut(s)	485, 497, 844
Tru9I	TTAA	3 cut(s)	485, 497, 844
TscAI	CASTG	1 cut(s)	279
TseFI	GTSAC	2 cut(s)	112, 505
TseI	GCWGC	4 cut(s)	473, 515, 659, 701
Tsp45I	GTSAC	2 cut(s)	112, 505
TspDTI	ATGAA	4 cut(s)	207, 337, 433, 571
TspRI	CASTG	1 cut(s)	279
Vha464I	CTTAAG	1 cut(s)	496
VpaK11BI	GGWCC	1 cut(s)	737
XapI	RAATTY	1 cut(s)	440
XceI	RCATGY	2 cut(s)	360, 722
XmiI	GTMKAC	1 cut(s)	598
XspI	CTAG	1 cut(s)	83
ZrmI	AGTACT	2 cut(s)	213, 644
Zsp2I	ATGCAT	1 cut(s)	724

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.