AT1G61630

Nucleoside transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0001163
Physical Location & Seq
Forward (+)
22744207 .. 22746147
1941 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G61630.1

Sequence Viewer

Length: 1254 bp
ATGACTAATCCAGAGGATATCCCTAGCAGGATCGAGGGCAAGAATGTAGCAAGACTTGTGTGTTGTTTCCTTGGAGTAGGGTCTCTCGTGGCATGGAATGCGATGCTGACCATCACTGATTACTATTATCAACTTTTCCCAAAATACCATCCATCGAGGGTGCTGACAATAGTTTACCAATTGGTTGCGAATGTGTTTATAATAACACTTGCTACTAAAGAAGCTAAGCTCAATACTCGACTTCGTAACATTTTTGGGTATAGCCTTTATACCGCTGGTACCTTTTGTCTCATCATTTTGGATCTTGCTTCACATGGCAGTGGAAGCGTAGTAGCATATGTGTTGTTATGTTTGATCGTTGCTCTTTTCGGTCTCGCTGATGCTTTTGTACAAGGTGCAATGGTTGGAGATTTATCCTTCATGTCCCCCGACTTCATCCAGGCGTTCATGGCCGGTTTAGGCATAGCTGGAGCTCTAACCTCGGTATTAAGGCTTATTACTAAAGCAATCTTCGACAATTCGCCTGATGGTCTTCGAAAAGGCGCTTTGTTGTTCATAGGAATAGCGACATTGATCGAGTTAGCCTGTGTCTTTCTATATACACTAGTCTTTGCTAAGCTCCCTATCGTGAAGTACTACCGCGCAAAAGCTGGGAAAGAAGGGGCCAAAACTGTTTCAGCGGATCTTGCCGCAGCTGGCCTCCAAGAGCAAGCTGAACAGGTTCACCAAATGGATGAGTCCAAGATCCAAAAACTAACCAAGAAGCAGTTACTACGGGAAAACATAGATCTTGGAATCAATCTTTCCTTGATTTACGTGGTGACGCTATCGATTTTCCCGGGGTTTCTTTACGAGAACACAGGAGAACATAGATTGGGCGATTGGTATGCACCGGTTCTAGTAGCCATGTACAACGGGTGGGATGCGATATCGAGGTTCATTCCCTCGATCAAACCGTTAGCAATGGAGTCTAGGAAATGGATCACGGTCTGCGTTGTGGCACGTCTTTTGCTCGTTCCGGCCTTTTACTTTACTGCTAAATACGCAGATCAAGGATGGATGCTTTTCCTCACCTCTTTCTTGGGATTGAGTAACGGTTATTTAACCGTTTGTATCTTCAGCACTGCACCAAAGGGCTACAATGGACCGGAAGCAAATGCATTAGGGAATTTGATGTGTGTGTTTCTATTGGGAGGGATCTTCGCTGGAGTTTGTTTGGGTTGGCTTTGGCTCATTGGCAACGATTCGTTTTAG

Protein Analysis

417

Amino Acids

45.73

Weight (kDa)

8.45

Isoelectric Point (pI)

30.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nucleoside_tran PF01733 120 - 410 8.5e-34 Nucleoside transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 200
Acc65I GGTACC 1 cut(s) 278
AccB1I GGYRCC 1 cut(s) 278
AccII CGCG 1 cut(s) 642
AciI CCGC 4 cut(s) 273, 640, 680, 690
AclWI GGATC 6 cut(s) 38, 309, 690, 739, 989, 1205
AcoI YGGCCR 1 cut(s) 450
AcsI RAATTY 1 cut(s) 1168
AcuI CTGAAG 1 cut(s) 1102
AfaI GTAC 4 cut(s) 280, 390, 635, 911
AgeI ACCGGT 1 cut(s) 892
AhlI ACTAGT 1 cut(s) 604
AjiI CACGTC 1 cut(s) 1004
AjnI CCWGG 1 cut(s) 438
AluBI AGCT 8 cut(s) 224, 229, 467, 473, 619, 650, 695, 713
AluI AGCT 8 cut(s) 224, 229, 467, 473, 619, 650, 695, 713
Alw21I GWGCWC 1 cut(s) 475
Alw26I GTCTC 3 cut(s) 87, 293, 377
AlwI GGATC 6 cut(s) 38, 309, 690, 739, 989, 1205
Ama87I CYCGRG 1 cut(s) 838
AoxI GGCC 4 cut(s) 450, 663, 697, 1020
ApeKI GCWGC 1 cut(s) 692
ApoI RAATTY 1 cut(s) 1168
AsiGI ACCGGT 1 cut(s) 892
Asp700I GAANNNNTTC 1 cut(s) 720
Asp718I GGTACC 1 cut(s) 278
AspLEI GCGC 2 cut(s) 545, 644
AspS9I GGNCC 2 cut(s) 663, 1145
AsuC2I CCSGG 2 cut(s) 839, 840
AsuHPI GGTGA 3 cut(s) 716, 832, 1063
AsuII TTCGAA 1 cut(s) 535
AvaI CYCGRG 1 cut(s) 838
AvaII GGWCC 1 cut(s) 1145
BanI GGYRCC 1 cut(s) 278
BanII GRGCYC 1 cut(s) 475
BauI CACGAG 1 cut(s) 86
BbsI GAAGAC 1 cut(s) 524
Bbv12I GWGCWC 1 cut(s) 475
BbvI GCAGC 1 cut(s) 704
BccI CCATC 5 cut(s) 119, 156, 160, 521, 1050
BcgI CGANNNNNNTGC 2 cut(s) 869, 903
BciT130I CCWGG 1 cut(s) 440
BcnI CCSGG 2 cut(s) 839, 840
BcoDI GTCTC 3 cut(s) 87, 293, 377
BcuI ACTAGT 1 cut(s) 604
BfaI CTAG 4 cut(s) 24, 605, 899, 972
BfoI RGCGCY 1 cut(s) 546
BglII AGATCT 1 cut(s) 787
BisI GCNGC 2 cut(s) 690, 693
BlpI GCTNAGC 2 cut(s) 225, 615
BlsI GCNGC 2 cut(s) 691, 694
BmcAI AGTACT 1 cut(s) 635
Bme1390I CCNGG 3 cut(s) 440, 839, 840
Bme18I GGWCC 1 cut(s) 1145
BmeT110I CYCGRG 1 cut(s) 838
BmgBI CACGTC 1 cut(s) 1004
BmgT120I GGNCC 2 cut(s) 663, 1145
BmiI GGNNCC 2 cut(s) 280, 664
BmrFI CCNGG 3 cut(s) 440, 839, 840
BmsI GCATC 4 cut(s) 93, 370, 913, 1050
BpiI GAAGAC 1 cut(s) 524
BpmI CTGGAG 2 cut(s) 489, 1227
Bpu1102I GCTNAGC 2 cut(s) 225, 615
Bpu14I TTCGAA 1 cut(s) 535
BpuMI CCSGG 2 cut(s) 839, 840
Bsa29I ATCGAT 1 cut(s) 830
BsaAI YACGTR 1 cut(s) 817
BsaI GGTCTC 2 cut(s) 87, 377
BsaJI CCNNGG 4 cut(s) 70, 480, 838, 839
BsaWI WCCGGW 2 cut(s) 892, 1147
Bse118I RCCGGY 2 cut(s) 452, 892
Bse3DI GCAATG 2 cut(s) 405, 969
BseBI CCWGG 1 cut(s) 440
BseCI ATCGAT 1 cut(s) 830
BseDI CCNNGG 4 cut(s) 70, 480, 838, 839
BseGI GGATG 6 cut(s) 148, 435, 739, 928, 1061, 1065
BseMI GCAATG 2 cut(s) 405, 969
BseXI GCAGC 1 cut(s) 704
BseYI CCCAGC 1 cut(s) 650
BsgI GTGCAG 1 cut(s) 1110
Bsh1236I CGCG 1 cut(s) 642
BshFI GGCC 4 cut(s) 452, 665, 699, 1022
BshNI GGYRCC 1 cut(s) 278
BshTI ACCGGT 1 cut(s) 892
BshVI ATCGAT 1 cut(s) 830
BsiHKAI GWGCWC 1 cut(s) 475
BsiHKCI CYCGRG 1 cut(s) 838
BsiSI CCGG 5 cut(s) 453, 839, 893, 1019, 1148
BslFI GGGAC 1 cut(s) 409
BsmAI GTCTC 3 cut(s) 87, 293, 377
BsmFI GGGAC 1 cut(s) 409
BsmI GAATGC 1 cut(s) 103
BsnI GGCC 4 cut(s) 452, 665, 699, 1022
Bso31I GGTCTC 2 cut(s) 87, 377
BsoBI CYCGRG 1 cut(s) 838
Bsp119I TTCGAA 1 cut(s) 535
Bsp1286I GDGCHC 1 cut(s) 475
Bsp1407I TGTACA 2 cut(s) 388, 909
Bsp1720I GCTNAGC 2 cut(s) 225, 615
BspACI CCGC 4 cut(s) 273, 640, 680, 690
BspANI GGCC 4 cut(s) 452, 665, 699, 1022
BspDI ATCGAT 1 cut(s) 830
BspFNI CGCG 1 cut(s) 642
BspLI GGNNCC 2 cut(s) 280, 664
BspPI GGATC 6 cut(s) 38, 309, 690, 739, 989, 1205
BspT104I TTCGAA 1 cut(s) 535
BspT107I GGYRCC 1 cut(s) 278
BspTNI GGTCTC 2 cut(s) 87, 377
BsrDI GCAATG 2 cut(s) 405, 969
BsrFI RCCGGY 2 cut(s) 452, 892
BsrGI TGTACA 2 cut(s) 388, 909
BssAI RCCGGY 2 cut(s) 452, 892
BssECI CCNNGG 4 cut(s) 70, 480, 838, 839
BssSI CACGAG 1 cut(s) 86
BssT1I CCWWGG 1 cut(s) 70
Bst2BI CACGAG 1 cut(s) 86
Bst2UI CCWGG 1 cut(s) 440
Bst4CI ACNGT 5 cut(s) 673, 957, 988, 1097, 1108
BstAPI GCANNNNNTGC 1 cut(s) 98
BstAUI TGTACA 2 cut(s) 388, 909
BstBAI YACGTR 1 cut(s) 817
BstBI TTCGAA 1 cut(s) 535
BstC8I GCNNGC 2 cut(s) 697, 711
BstDEI CTNAG 2 cut(s) 225, 615
BstF5I GGATG 6 cut(s) 148, 435, 739, 928, 1061, 1065
BstFNI CGCG 1 cut(s) 642
BstH2I RGCGCY 1 cut(s) 546
BstHHI GCGC 2 cut(s) 545, 644
BstMAI GTCTC 3 cut(s) 87, 293, 377
BstMWI GCNNNNNNNGC 5 cut(s) 98, 324, 449, 686, 1043
BstNI CCWGG 1 cut(s) 440
BstSCI CCNGG 3 cut(s) 438, 837, 838
BstUI CGCG 1 cut(s) 642
BstV1I GCAGC 1 cut(s) 704
BstV2I GAAGAC 1 cut(s) 524
BstX2I RGATCY 5 cut(s) 301, 682, 744, 787, 1197
BstYI RGATCY 5 cut(s) 301, 682, 744, 787, 1197
Bsu15I ATCGAT 1 cut(s) 830
BsuRI GGCC 4 cut(s) 452, 665, 699, 1022
BsuTUI ATCGAT 1 cut(s) 830
BtgZI GCGATG 1 cut(s) 116
BtrI CACGTC 1 cut(s) 1004
BtsCI GGATG 6 cut(s) 148, 435, 739, 928, 1061, 1065
BtsI GCAGTG 2 cut(s) 325, 1122
BtsIMutI CAGTG 3 cut(s) 114, 325, 1122
Cac8I GCNNGC 2 cut(s) 697, 711
CfoI GCGC 2 cut(s) 545, 644
Cfr10I RCCGGY 2 cut(s) 452, 892
Cfr13I GGNCC 2 cut(s) 663, 1145
Cfr9I CCCGGG 1 cut(s) 838
ClaI ATCGAT 1 cut(s) 830
CseI GACGC 1 cut(s) 832
Csp6I GTAC 4 cut(s) 279, 389, 634, 910
CspAI ACCGGT 1 cut(s) 892
CviAII CATG 5 cut(s) 93, 314, 421, 448, 907
CviQI GTAC 4 cut(s) 279, 389, 634, 910
DdeI CTNAG 2 cut(s) 225, 615
EaeI YGGCCR 1 cut(s) 450
Ecl136II GAGCTC 1 cut(s) 473
Eco130I CCWWGG 1 cut(s) 70
Eco24I GRGCYC 1 cut(s) 475
Eco31I GGTCTC 2 cut(s) 87, 377
Eco32I GATATC 2 cut(s) 19, 930
Eco47I GGWCC 1 cut(s) 1145
Eco53kI GAGCTC 1 cut(s) 473
Eco57I CTGAAG 1 cut(s) 1102
Eco88I CYCGRG 1 cut(s) 838
EcoICRI GAGCTC 1 cut(s) 473
EcoRII CCWGG 1 cut(s) 438
EcoRV GATATC 2 cut(s) 19, 930
EcoT14I CCWWGG 1 cut(s) 70
EcoT22I ATGCAT 1 cut(s) 1162
EcoT38I GRGCYC 1 cut(s) 475
ErhI CCWWGG 1 cut(s) 70
FaeI CATG 5 cut(s) 96, 317, 424, 451, 910
FaqI GGGAC 1 cut(s) 409
FatI CATG 5 cut(s) 92, 313, 420, 447, 906
FauNDI CATATG 1 cut(s) 337
Fnu4HI GCNGC 2 cut(s) 690, 693
FokI GGATG 6 cut(s) 135, 422, 746, 935, 1068, 1072
FriOI GRGCYC 1 cut(s) 475
Fsp4HI GCNGC 2 cut(s) 690, 693
FspBI CTAG 4 cut(s) 24, 605, 899, 972
GlaI GCGC 2 cut(s) 544, 643
GluI GCNGC 2 cut(s) 690, 693
GsaI CCCAGC 1 cut(s) 654
GsuI CTGGAG 2 cut(s) 489, 1227
HaeII RGCGCY 1 cut(s) 546
HaeIII GGCC 4 cut(s) 452, 665, 699, 1022
HapII CCGG 5 cut(s) 453, 839, 893, 1019, 1148
HgaI GACGC 1 cut(s) 832
HhaI GCGC 2 cut(s) 545, 644
Hin1II CATG 5 cut(s) 96, 317, 424, 451, 910
Hin6I GCGC 2 cut(s) 543, 642
HinP1I GCGC 2 cut(s) 543, 642
HinfI GANTC 4 cut(s) 737, 795, 968, 1244
HpaII CCGG 5 cut(s) 453, 839, 893, 1019, 1148
HphI GGTGA 3 cut(s) 716, 832, 1063
Hpy166II GTNNAC 2 cut(s) 175, 724
Hpy188III TCNNGA 2 cut(s) 11, 628
Hpy8I GTNNAC 2 cut(s) 175, 724
HpyAV CCTTC 2 cut(s) 427, 653
HpyCH4III ACNGT 5 cut(s) 673, 957, 988, 1097, 1108
HpyCH4IV ACGT 2 cut(s) 816, 1003
HpyCH4V TGCA 4 cut(s) 398, 890, 1127, 1160
HpyF10VI GCNNNNNNNGC 5 cut(s) 98, 324, 449, 686, 1043
HpyF3I CTNAG 2 cut(s) 225, 615
HpySE526I ACGT 2 cut(s) 816, 1003
Hsp92II CATG 5 cut(s) 96, 317, 424, 451, 910
HspAI GCGC 2 cut(s) 543, 642
KpnI GGTACC 1 cut(s) 282
LmnI GCTCC 2 cut(s) 470, 624
Lsp1109I GCAGC 1 cut(s) 704
LweI GCATC 4 cut(s) 93, 370, 913, 1050
MaeI CTAG 4 cut(s) 24, 605, 899, 972
MaeII ACGT 2 cut(s) 816, 1003
MaeIII GTNAC 4 cut(s) 245, 768, 820, 1091
MboII GAAGA 4 cut(s) 502, 524, 1108, 1192
MfeI CAATTG 1 cut(s) 179
MflI RGATCY 5 cut(s) 301, 682, 744, 787, 1197
MhlI GDGCHC 1 cut(s) 475
MluCI AATT 3 cut(s) 179, 517, 1168
MlyI GAGTC 2 cut(s) 746, 977
MmeI TCCRAC 1 cut(s) 385
Mph1103I ATGCAT 1 cut(s) 1162
MroXI GAANNNNTTC 1 cut(s) 720
MseI TTAA 2 cut(s) 488, 1103
MslI CAYNNNNRTG 1 cut(s) 318
MspA1I CMGCKG 3 cut(s) 275, 680, 695
MspI CCGG 5 cut(s) 453, 839, 893, 1019, 1148
MspR9I CCNGG 3 cut(s) 440, 839, 840
MunI CAATTG 1 cut(s) 179
Mva1269I GAATGC 1 cut(s) 103
MvaI CCWGG 1 cut(s) 440
MvnI CGCG 1 cut(s) 642
MwoI GCNNNNNNNGC 5 cut(s) 98, 324, 449, 686, 1043
NciI CCSGG 2 cut(s) 839, 840
NdeI CATATG 1 cut(s) 337
NlaIII CATG 5 cut(s) 96, 317, 424, 451, 910
NlaIV GGNNCC 2 cut(s) 280, 664
NmuCI GTSAC 1 cut(s) 820
NsiI ATGCAT 1 cut(s) 1162
NspV TTCGAA 1 cut(s) 535
PcsI WCGNNNNNNNCGW 1 cut(s) 953
PctI GAATGC 1 cut(s) 103
PdmI GAANNNNTTC 1 cut(s) 720
PfeI GAWTC 2 cut(s) 795, 1244
PinAI ACCGGT 1 cut(s) 892
PkrI GCNGC 2 cut(s) 691, 694
PleI GAGTC 2 cut(s) 745, 976
PpsI GAGTC 2 cut(s) 745, 976
Ppu21I YACGTR 1 cut(s) 817
PsiI TTATAA 1 cut(s) 200
Psp124BI GAGCTC 1 cut(s) 475
Psp6I CCWGG 1 cut(s) 438
PspFI CCCAGC 1 cut(s) 650
PspGI CCWGG 1 cut(s) 438
PspN4I GGNNCC 2 cut(s) 280, 664
PspPI GGNCC 2 cut(s) 663, 1145
PsuI RGATCY 5 cut(s) 301, 682, 744, 787, 1197
PvuII CAGCTG 1 cut(s) 695
RsaI GTAC 4 cut(s) 280, 390, 635, 911
RsaNI GTAC 4 cut(s) 279, 389, 634, 910
RseI CAYNNNNRTG 1 cut(s) 318
SacI GAGCTC 1 cut(s) 475
SaqAI TTAA 2 cut(s) 488, 1103
SatI GCNGC 2 cut(s) 690, 693
Sau96I GGNCC 2 cut(s) 663, 1145
ScaI AGTACT 1 cut(s) 635
SchI GAGTC 2 cut(s) 746, 977
ScrFI CCNGG 3 cut(s) 440, 839, 840
SduI GDGCHC 1 cut(s) 475
SfaNI GCATC 4 cut(s) 93, 370, 913, 1050
SfuI TTCGAA 1 cut(s) 535
SinI GGWCC 1 cut(s) 1145
SmaI CCCGGG 1 cut(s) 840
SmiMI CAYNNNNRTG 1 cut(s) 318
SpeI ACTAGT 1 cut(s) 604
Sse9I AATT 3 cut(s) 179, 517, 1168
SsiI CCGC 4 cut(s) 273, 640, 680, 690
SspMI CTAG 4 cut(s) 24, 605, 899, 972
SstI GAGCTC 1 cut(s) 475
StyD4I CCNGG 3 cut(s) 438, 837, 838
StyI CCWWGG 1 cut(s) 70
TaaI ACNGT 5 cut(s) 673, 957, 988, 1097, 1108
TaiI ACGT 2 cut(s) 819, 1006
TaqI TCGA 9 cut(s) 33, 155, 238, 513, 535, 576, 830, 932, 947
TaqII GACCGA 1 cut(s) 359
TasI AATT 3 cut(s) 179, 517, 1168
TatI WGTACW 3 cut(s) 388, 633, 909
TauI GCSGC 1 cut(s) 692
TfiI GAWTC 2 cut(s) 795, 1244
Tru1I TTAA 2 cut(s) 488, 1103
Tru9I TTAA 2 cut(s) 488, 1103
TscAI CASTG 3 cut(s) 121, 325, 1129
TseFI GTSAC 1 cut(s) 820
TseI GCWGC 1 cut(s) 692
Tsp45I GTSAC 1 cut(s) 820
TspDTI ATGAA 5 cut(s) 409, 424, 436, 544, 928
TspMI CCCGGG 1 cut(s) 838
TspRI CASTG 3 cut(s) 121, 325, 1129
VpaK11BI GGWCC 1 cut(s) 1145
XapI RAATTY 1 cut(s) 1168
XmaI CCCGGG 1 cut(s) 838
XmnI GAANNNNTTC 1 cut(s) 720
XspI CTAG 4 cut(s) 24, 605, 899, 972
ZrmI AGTACT 1 cut(s) 635
Zsp2I ATGCAT 1 cut(s) 1162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.