Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0001163

Physical Location & Seq

Genomic Coordinates Forward (+)

57933951 .. 57936954

Gene Structure 3004 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0418600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGGAAAACAAGTCGACTATGAATGCAAGCCTTCTGTTCTTCTCTGCTCTGTTTCTTGTACTTGTAAGCTGCTGCAGCTTATCCTCTTGTGCAGCAGATGCAGATCATGAGCTACGACGGCTGCAACACGCTTCCGCCAAAGCCGACGGATCTTTGAGCTTCTTGGTCGTTGGAGACTGGGGAAGAAGAGGAACTTACAATCAATCCCGAGTTGCTCTTCAGATGGGAGTAGTTGGAGAGAAGTTGGATATCGATTTTGTAATATCCACCGGCGATAACTTTTACGATGATGGATTGACGGGCATCGACGATCCGGCCTTTGAAGAGTCGTTTTCCAAGATCTACACAGCTCCTAGCTTGCAAAAGCAATGGTACAATGTTTTGGGTAATCATGATTATAGGGGTAATGTTCAGGCCCAATTAAGTCCTGTCCTGACTGGATTGGATGGCAGATGGCTTTCCATGAGATCCTTCATAGTTGATGCAGAAATTGCAGAGTTTTTCTTCGTGGACACAACTCCCTTTGCAGACAAATACTTCACTGACCCAGAGGACCATGTCTACGACTGGAGTGGCATATTACCCAGAAATGAGTACCTCTCAAATATTCTCAAGGATGTGGATTCAGCGCTAAAAGAATCGAACACGAAGTGGAAGATCGTGGTCGGTCACCATGGAATTAGAAGTGCTGGACAACATGGTGACACTGCAGAGCTTGTATCACAGCTTCTCCCAATTCTTGAGGCCAACGATGTTGATCTTTACATCAATGGGCACGACCATTGCTTACAACACATTAGTACTCCCAACAGCCCGATTCAATTTCTAACGAGTGGTGGTGGATCGAAGGCATGGAGGGGCGTTGTAATGCCGTACGATCCAAGTGAAATAAAGCTGTATTACGACGGACAGGGTTTCATGTCGGTGCAAATCACTCCAAGCCAAGTAGATATTGCATTCTATGATGTTTTTGGTAATGTGTTGCACAAATGGGGCACATCAAAGGACCTTTACTCTACTACCATGTATATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005337 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0015858 GO:0015931 GO:0015932 GO:0016020 GO:0022857 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:1901264 GO:1901505 GO:1901642

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nucleoside_tran

Protein Analysis

344

Amino Acids

38.35

Weight (kDa)

4.86

Isoelectric Point (pI)

43.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Metallophos	PF00149	53 - 262	7.2e-20	Calcineurin-like phosphoesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001163)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61630 AT4G05110 AT4G05110 AT4G05110 AT4G05120 AT4G05120 AT4G05130 AT4G05140
fragaria_vesca	FvH4_3g03740 FvH4_3g03740 FvH4_3g03740 FvH4_3g03740 FvH4_3g03750 FvH4_5g10501
malus_domestica	MD05G1326900.v1.1 MD10G1305000.v1.1
prunus_persica	Prupe.4G034600_v2.0.a1
pyrus_communis	pycom05g30120 pycom10g25750
rosa_chinensis	RchiOBHm_Chr5g0005801 RchiOBHm_Chr5g0005811 RchiOBHm_Chr5g0005821 RchiOBHm_Chr7g0187631
rosa_laevigata	RLG00000004764 RLG00000031327 RLG00000031328 RLG00000031329
rosa_multiflora	Rmu_sc0002694.1_g000001
rosa_roxburghii	Rroxscaffold_1G00070040 Rroxscaffold_1G00070050 Rroxscaffold_1G00070060 Rroxscaffold_3G00267210
rosa_rugosa	Rorug04G0418200 Rorug04G0418300 Rorug04G0418400 Rorug04G0418500 Rorug04G0418500 Rorug04G0418600 Rorug04G0418700 Rorug06G0483300
rosa_samantha	Rh5AG045700 Rh5AG045800 Rh5AG045900 Rh5BG044400 Rh5BG044600 Rh5CG053200 Rh5CG053400 Rh5CG053500 Rh5DG044300 Rh7AG088200 Rh7BG089500 Rh7CG088800 Rh7DG090500
rosa_wichuraiana	Rw0G002660 Rw5G004600 Rw5G004610 Rw5G004620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	14, 561
AciI	CCGC	1 cut(s)	135
AclWI	GGATC	5 cut(s)	157, 305, 462, 850, 872
AcuI	CTGAAG	1 cut(s)	203
AdeI	CACNNNGTG	1 cut(s)	651
AfaI	GTAC	5 cut(s)	60, 374, 596, 802, 875
AfeI	AGCGCT	1 cut(s)	630
AgsI	TTSAA	2 cut(s)	323, 821
AluBI	AGCT	9 cut(s)	69, 78, 112, 159, 350, 357, 715, 727, 895
AluI	AGCT	9 cut(s)	69, 78, 112, 159, 350, 357, 715, 727, 895
Alw26I	GTCTC	1 cut(s)	168
AlwI	GGATC	5 cut(s)	157, 305, 462, 850, 872
Ama87I	CYCGRG	1 cut(s)	207
Aor51HI	AGCGCT	1 cut(s)	630
AoxI	GGCC	3 cut(s)	315, 414, 744
ApeKI	GCWGC	5 cut(s)	69, 72, 75, 92, 121
AspLEI	GCGC	1 cut(s)	631
AspS9I	GGNCC	3 cut(s)	415, 553, 1006
AsuHPI	GGTGA	2 cut(s)	662, 713
AvaI	CYCGRG	1 cut(s)	207
AvaII	GGWCC	2 cut(s)	553, 1006
BaeGI	GKGCMC	2 cut(s)	777, 998
BarI	GAAGNNNNNNTAC	2 cut(s)	711, 743
BbvI	GCAGC	5 cut(s)	56, 59, 87, 104, 108
BccI	CCATC	4 cut(s)	217, 284, 440, 447
BceAI	ACGGC	2 cut(s)	134, 856
BcoDI	GTCTC	1 cut(s)	168
BfaI	CTAG	1 cut(s)	354
BfmI	CTRYAG	2 cut(s)	73, 708
BfoI	RGCGCY	1 cut(s)	632
BglII	AGATCT	1 cut(s)	339
BisI	GCNGC	5 cut(s)	70, 73, 76, 93, 122
BlsI	GCNGC	5 cut(s)	71, 74, 77, 94, 123
BmcAI	AGTACT	1 cut(s)	802
Bme18I	GGWCC	2 cut(s)	553, 1006
BmeT110I	CYCGRG	1 cut(s)	207
BmgT120I	GGNCC	3 cut(s)	415, 553, 1006
BmrI	ACTGGG	1 cut(s)	187
BmsI	GCATC	3 cut(s)	88, 312, 472
BmuI	ACTGGG	1 cut(s)	187
BplI	GAGNNNNNCTC	2 cut(s)	584, 616
BpmI	CTGGAG	1 cut(s)	589
BpuEI	CTTGAG	2 cut(s)	596, 761
Bsa29I	ATCGAT	1 cut(s)	252
BsaBI	GATNNNNATC	2 cut(s)	102, 756
BsaJI	CCNNGG	1 cut(s)	673
BsaXI	ACNNNNNCTCC	2 cut(s)	714, 744
Bse118I	RCCGGY	1 cut(s)	269
Bse1I	ACTGG	3 cut(s)	182, 442, 572
Bse3DI	GCAATG	2 cut(s)	374, 781
Bse8I	GATNNNNATC	2 cut(s)	102, 756
BseCI	ATCGAT	1 cut(s)	252
BseDI	CCNNGG	1 cut(s)	673
BseGI	GGATG	2 cut(s)	451, 622
BseJI	GATNNNNATC	2 cut(s)	102, 756
BseMI	GCAATG	2 cut(s)	374, 781
BseNI	ACTGG	3 cut(s)	182, 442, 572
BseSI	GKGCMC	2 cut(s)	777, 998
BseXI	GCAGC	5 cut(s)	56, 59, 87, 104, 108
BsgI	GTGCAG	1 cut(s)	111
BshFI	GGCC	3 cut(s)	317, 416, 746
BshVI	ATCGAT	1 cut(s)	252
BsiHKCI	CYCGRG	1 cut(s)	207
BsiSI	CCGG	2 cut(s)	270, 314
BsiWI	CGTACG	1 cut(s)	873
BsmAI	GTCTC	1 cut(s)	168
BsmI	GAATGC	2 cut(s)	28, 956
BsnI	GGCC	3 cut(s)	317, 416, 746
BsoBI	CYCGRG	1 cut(s)	207
Bsp1286I	GDGCHC	2 cut(s)	777, 998
Bsp143I	GATC	9 cut(s)	103, 149, 310, 339, 467, 657, 757, 842, 877
Bsp19I	CCATGG	1 cut(s)	673
BspACI	CCGC	1 cut(s)	135
BspANI	GGCC	3 cut(s)	317, 416, 746
BspDI	ATCGAT	1 cut(s)	252
BspHI	TCATGA	2 cut(s)	106, 391
BspMAI	CTGCAG	2 cut(s)	77, 712
BspPI	GGATC	5 cut(s)	157, 305, 462, 850, 872
BspQI	GCTCTTC	1 cut(s)	222
BsrDI	GCAATG	2 cut(s)	374, 781
BsrFI	RCCGGY	1 cut(s)	269
BsrI	ACTGG	3 cut(s)	182, 442, 572
BssAI	RCCGGY	1 cut(s)	269
BssECI	CCNNGG	1 cut(s)	673
BssMI	GATC	9 cut(s)	103, 149, 310, 339, 467, 657, 757, 842, 877
BssT1I	CCWWGG	1 cut(s)	673
Bst6I	CTCTTC	3 cut(s)	181, 222, 318
BstAPI	GCANNNNNTGC	2 cut(s)	98, 491
BstC8I	GCNNGC	2 cut(s)	28, 359
BstDSI	CCRYGG	1 cut(s)	673
BstEII	GGTNACC	1 cut(s)	668
BstF5I	GGATG	2 cut(s)	451, 622
BstH2I	RGCGCY	1 cut(s)	632
BstHHI	GCGC	1 cut(s)	631
BstKTI	GATC	9 cut(s)	106, 152, 313, 342, 470, 660, 760, 845, 880
BstMAI	GTCTC	1 cut(s)	168
BstMBI	GATC	9 cut(s)	103, 149, 310, 339, 467, 657, 757, 842, 877
BstMWI	GCNNNNNNNGC	4 cut(s)	75, 98, 118, 491
BstPI	GGTNACC	1 cut(s)	668
BstSFI	CTRYAG	2 cut(s)	73, 708
BstSLI	GKGCMC	2 cut(s)	777, 998
BstV1I	GCAGC	5 cut(s)	56, 59, 87, 104, 108
BstX2I	RGATCY	3 cut(s)	149, 339, 467
BstYI	RGATCY	3 cut(s)	149, 339, 467
Bsu15I	ATCGAT	1 cut(s)	252
BsuRI	GGCC	3 cut(s)	317, 416, 746
BsuTUI	ATCGAT	1 cut(s)	252
BtgI	CCRYGG	1 cut(s)	673
BtsCI	GGATG	2 cut(s)	451, 622
BtsI	GCAGTG	1 cut(s)	705
BtsIMutI	CAGTG	2 cut(s)	540, 705
Cac8I	GCNNGC	2 cut(s)	28, 359
CciI	TCATGA	2 cut(s)	106, 391
CfoI	GCGC	1 cut(s)	631
Cfr10I	RCCGGY	1 cut(s)	269
Cfr13I	GGNCC	3 cut(s)	415, 553, 1006
ClaI	ATCGAT	1 cut(s)	252
Csp6I	GTAC	5 cut(s)	59, 373, 595, 801, 874
CviAII	CATG	9 cut(s)	107, 392, 463, 557, 674, 698, 852, 919, 1024
CviQI	GTAC	5 cut(s)	59, 373, 595, 801, 874
DpnI	GATC	9 cut(s)	105, 151, 312, 341, 469, 659, 759, 844, 879
DpnII	GATC	9 cut(s)	103, 149, 310, 339, 467, 657, 757, 842, 877
DraIII	CACNNNGTG	1 cut(s)	651
Eam1104I	CTCTTC	3 cut(s)	181, 222, 318
EarI	CTCTTC	3 cut(s)	181, 222, 318
EciI	GGCGGA	1 cut(s)	124
Eco130I	CCWWGG	1 cut(s)	673
Eco32I	GATATC	1 cut(s)	250
Eco47I	GGWCC	2 cut(s)	553, 1006
Eco47III	AGCGCT	1 cut(s)	630
Eco57I	CTGAAG	1 cut(s)	203
Eco88I	CYCGRG	1 cut(s)	207
Eco91I	GGTNACC	1 cut(s)	668
EcoO109I	RGGNCCY	1 cut(s)	1006
EcoO65I	GGTNACC	1 cut(s)	668
EcoRV	GATATC	1 cut(s)	250
EcoT14I	CCWWGG	1 cut(s)	673
ErhI	CCWWGG	1 cut(s)	673
FaeI	CATG	9 cut(s)	110, 395, 466, 560, 677, 701, 855, 922, 1027
FalI	AAGNNNNNCTT	2 cut(s)	178, 210
FatI	CATG	9 cut(s)	106, 391, 462, 556, 673, 697, 851, 918, 1023
FblI	GTMKAC	2 cut(s)	14, 561
Fnu4HI	GCNGC	5 cut(s)	70, 73, 76, 93, 122
FokI	GGATG	2 cut(s)	458, 629
Fsp4HI	GCNGC	5 cut(s)	70, 73, 76, 93, 122
FspBI	CTAG	1 cut(s)	354
GlaI	GCGC	1 cut(s)	630
GluI	GCNGC	5 cut(s)	70, 73, 76, 93, 122
GsuI	CTGGAG	1 cut(s)	589
HaeII	RGCGCY	1 cut(s)	632
HaeIII	GGCC	3 cut(s)	317, 416, 746
HapII	CCGG	2 cut(s)	270, 314
HhaI	GCGC	1 cut(s)	631
Hin1II	CATG	9 cut(s)	110, 395, 466, 560, 677, 701, 855, 922, 1027
Hin6I	GCGC	1 cut(s)	629
HinP1I	GCGC	1 cut(s)	629
HincII	GTYRAC	1 cut(s)	15
HindII	GTYRAC	1 cut(s)	15
HinfI	GANTC	4 cut(s)	326, 623, 638, 817
HpaII	CCGG	2 cut(s)	270, 314
HphI	GGTGA	2 cut(s)	662, 713
Hpy166II	GTNNAC	3 cut(s)	15, 511, 562
Hpy188I	TCNGA	1 cut(s)	222
Hpy188III	TCNNGA	5 cut(s)	107, 207, 392, 433, 740
Hpy8I	GTNNAC	3 cut(s)	15, 511, 562
Hpy99I	CGWCG	4 cut(s)	120, 149, 311, 908
HpyAV	CCTTC	3 cut(s)	41, 481, 841
HpyF10VI	GCNNNNNNNGC	4 cut(s)	75, 98, 118, 491
Hsp92II	CATG	9 cut(s)	110, 395, 466, 560, 677, 701, 855, 922, 1027
HspAI	GCGC	1 cut(s)	629
Kzo9I	GATC	9 cut(s)	103, 149, 310, 339, 467, 657, 757, 842, 877
LguI	GCTCTTC	1 cut(s)	222
LmnI	GCTCC	1 cut(s)	355
Lsp1109I	GCAGC	5 cut(s)	56, 59, 87, 104, 108
LweI	GCATC	3 cut(s)	88, 312, 472
MaeI	CTAG	1 cut(s)	354
MaeIII	GTNAC	2 cut(s)	668, 701
MalI	GATC	9 cut(s)	105, 151, 312, 341, 469, 659, 759, 844, 879
MboI	GATC	9 cut(s)	103, 149, 310, 339, 467, 657, 757, 842, 877
MboII	GAAGA	7 cut(s)	31, 195, 198, 209, 335, 496, 667
MflI	RGATCY	3 cut(s)	149, 339, 467
MhlI	GDGCHC	2 cut(s)	777, 998
MluCI	AATT	5 cut(s)	419, 489, 678, 735, 821
MlyI	GAGTC	1 cut(s)	335
MmeI	TCCRAC	3 cut(s)	151, 214, 225
MnlI	CCTC	6 cut(s)	94, 182, 544, 608, 736, 849
MseI	TTAA	1 cut(s)	422
MslI	CAYNNNNRTG	2 cut(s)	923, 1028
MspI	CCGG	2 cut(s)	270, 314
Mva1269I	GAATGC	2 cut(s)	28, 956
MwoI	GCNNNNNNNGC	4 cut(s)	75, 98, 118, 491
NcoI	CCATGG	1 cut(s)	673
NdeII	GATC	9 cut(s)	103, 149, 310, 339, 467, 657, 757, 842, 877
NlaIII	CATG	9 cut(s)	110, 395, 466, 560, 677, 701, 855, 922, 1027
NmuCI	GTSAC	2 cut(s)	668, 701
PagI	TCATGA	2 cut(s)	106, 391
PciSI	GCTCTTC	1 cut(s)	222
PctI	GAATGC	2 cut(s)	28, 956
PfeI	GAWTC	3 cut(s)	623, 638, 817
Pfl23II	CGTACG	1 cut(s)	873
PflFI	GACNNNGTC	1 cut(s)	557
PkrI	GCNGC	5 cut(s)	71, 74, 77, 94, 123
PleI	GAGTC	1 cut(s)	334
PpsI	GAGTC	1 cut(s)	334
PpuMI	RGGWCCY	1 cut(s)	1006
Psp5II	RGGWCCY	1 cut(s)	1006
PspEI	GGTNACC	1 cut(s)	668
PspLI	CGTACG	1 cut(s)	873
PspPI	GGNCC	3 cut(s)	415, 553, 1006
PspPPI	RGGWCCY	1 cut(s)	1006
PstI	CTGCAG	2 cut(s)	77, 712
PsuI	RGATCY	3 cut(s)	149, 339, 467
PsyI	GACNNNGTC	1 cut(s)	557
RsaI	GTAC	5 cut(s)	60, 374, 596, 802, 875
RsaNI	GTAC	5 cut(s)	59, 373, 595, 801, 874
RseI	CAYNNNNRTG	2 cut(s)	923, 1028
SalI	GTCGAC	1 cut(s)	13
SapI	GCTCTTC	1 cut(s)	222
SaqAI	TTAA	1 cut(s)	422
SatI	GCNGC	5 cut(s)	70, 73, 76, 93, 122
Sau3AI	GATC	9 cut(s)	103, 149, 310, 339, 467, 657, 757, 842, 877
Sau96I	GGNCC	3 cut(s)	415, 553, 1006
ScaI	AGTACT	1 cut(s)	802
SchI	GAGTC	1 cut(s)	335
SduI	GDGCHC	2 cut(s)	777, 998
SfaNI	GCATC	3 cut(s)	88, 312, 472
SfcI	CTRYAG	2 cut(s)	73, 708
SgrAI	CRCCGGYG	1 cut(s)	269
SinI	GGWCC	2 cut(s)	553, 1006
SmiMI	CAYNNNNRTG	2 cut(s)	923, 1028
SmlI	CTYRAG	2 cut(s)	611, 740
SmoI	CTYRAG	2 cut(s)	611, 740
Sse9I	AATT	5 cut(s)	419, 489, 678, 735, 821
SsiI	CCGC	1 cut(s)	135
SspI	AATATT	1 cut(s)	607
SspMI	CTAG	1 cut(s)	354
StyI	CCWWGG	1 cut(s)	673
TaqI	TCGA	5 cut(s)	14, 252, 306, 641, 845
TaqII	GACCGA	1 cut(s)	656
TasI	AATT	5 cut(s)	419, 489, 678, 735, 821
TatI	WGTACW	2 cut(s)	58, 800
TfiI	GAWTC	3 cut(s)	623, 638, 817
Tru1I	TTAA	1 cut(s)	422
Tru9I	TTAA	1 cut(s)	422
TscAI	CASTG	2 cut(s)	547, 712
TseFI	GTSAC	2 cut(s)	668, 701
TseI	GCWGC	5 cut(s)	69, 72, 75, 92, 121
Tsp45I	GTSAC	2 cut(s)	668, 701
TspDTI	ATGAA	3 cut(s)	35, 463, 907
TspGWI	ACGGA	2 cut(s)	162, 921
TspRI	CASTG	2 cut(s)	547, 712
Tth111I	GACNNNGTC	1 cut(s)	557
VpaK11BI	GGWCC	2 cut(s)	553, 1006
XmiI	GTMKAC	2 cut(s)	14, 561
XspI	CTAG	1 cut(s)	354
ZrmI	AGTACT	1 cut(s)	802

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.