Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0001163

Physical Location & Seq

Genomic Coordinates Forward (+)

4796491 .. 4799601

Gene Structure 3111 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G004620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGGTAGCTAGAGGGAAGAGTTTGCAGGGAGTAGCCATGTCTAAGACTCAAACAATGCTTGAGGTGGATTTAGCTACATCTGGGACTGGAGGATTTGGATATTTCATCGCTACATGCGCAATTGTTGGTGCATTTGGGGTTGCAGGTGGAAATGTTGAAGGTGCGGTTATGGGTGAACTATCTTTTATGCGTCCTGAATTCATCCAGTCCTTCTTTGTTGGCTTGGGTGCAGCAGGTGCTTTAAGTTCTGCCTTAAGATTAGTGACAAAAGCTGCCTTTGAGAAATATGACAACTGTCTTCGCAAGGGAGCAATGTTGTTCTTGGCAACTTCCACATTCATTGAGCTTCTCTGTATATTTTTATATGAAATTTACTTCCCAAGATTGCCTATAGTAGAGTACTACCGCTCAAAGGCAGCCTCAGAAGGCTTTACAACTATATCCGCTGATCTCGCCGCTGCTGGCATTCAGGAACATGCATCAGATATAGAAGGACCTGAGAAAAATGCCTTGGGGAACACTCTTGTGCTGTGTCTTTTGTCTGGCAGATTTGTGGGGGGTTGCCTTGGCTGGTTATGGCTCATTGGTAATGACACATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005337 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0015858 GO:0015931 GO:0015932 GO:0016020 GO:0022857 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:1901264 GO:1901505 GO:1901642

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nucleoside_tran

Protein Analysis

200

Amino Acids

21.23

Weight (kDa)

5.2

Isoelectric Point (pI)

29.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nucleoside_tran	PF01733	46 - 170	6.9e-10	Nucleoside transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001163)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61630 AT4G05110 AT4G05110 AT4G05110 AT4G05120 AT4G05120 AT4G05130 AT4G05140
fragaria_vesca	FvH4_3g03740 FvH4_3g03740 FvH4_3g03740 FvH4_3g03740 FvH4_3g03750 FvH4_5g10501
malus_domestica	MD05G1326900.v1.1 MD10G1305000.v1.1
prunus_persica	Prupe.4G034600_v2.0.a1
pyrus_communis	pycom05g30120 pycom10g25750
rosa_chinensis	RchiOBHm_Chr5g0005801 RchiOBHm_Chr5g0005811 RchiOBHm_Chr5g0005821 RchiOBHm_Chr7g0187631
rosa_laevigata	RLG00000004764 RLG00000031327 RLG00000031328 RLG00000031329
rosa_multiflora	Rmu_sc0002694.1_g000001
rosa_roxburghii	Rroxscaffold_1G00070040 Rroxscaffold_1G00070050 Rroxscaffold_1G00070060 Rroxscaffold_3G00267210
rosa_rugosa	Rorug04G0418200 Rorug04G0418300 Rorug04G0418400 Rorug04G0418500 Rorug04G0418500 Rorug04G0418600 Rorug04G0418700 Rorug06G0483300
rosa_samantha	Rh5AG045700 Rh5AG045800 Rh5AG045900 Rh5BG044400 Rh5BG044600 Rh5CG053200 Rh5CG053400 Rh5CG053500 Rh5DG044300 Rh7AG088200 Rh7BG089500 Rh7CG088800 Rh7DG090500
rosa_wichuraiana	Rw0G002660 Rw5G004600 Rw5G004610 Rw5G004620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	134, 224
Acc16I	TGCGCA	1 cut(s)	118
Acc36I	ACCTGC	2 cut(s)	134, 224
AccBSI	CCGCTC	1 cut(s)	408
AciI	CCGC	4 cut(s)	164, 406, 444, 456
AcsI	RAATTY	2 cut(s)	197, 369
AfaI	GTAC	1 cut(s)	401
AfiI	CCNNNNNNNGG	1 cut(s)	412
AflII	CTTAAG	1 cut(s)	253
AgsI	TTSAA	1 cut(s)	158
AjuI	GAANNNNNNNTTGG	2 cut(s)	494, 526
AleI	CACNNNNGTG	1 cut(s)	524
AluBI	AGCT	4 cut(s)	8, 74, 272, 346
AluI	AGCT	4 cut(s)	8, 74, 272, 346
ApeKI	GCWGC	4 cut(s)	230, 272, 416, 458
ApoI	RAATTY	2 cut(s)	197, 369
AspLEI	GCGC	1 cut(s)	119
AspS9I	GGNCC	1 cut(s)	494
AsuHPI	GGTGA	1 cut(s)	185
AvaII	GGWCC	1 cut(s)	494
BbsI	GAAGAC	1 cut(s)	290
BbvI	GCAGC	4 cut(s)	242, 259, 428, 445
BfaI	CTAG	1 cut(s)	9
BfmI	CTRYAG	1 cut(s)	390
BfrI	CTTAAG	1 cut(s)	253
BfuAI	ACCTGC	2 cut(s)	134, 224
BisI	GCNGC	5 cut(s)	231, 273, 417, 456, 459
BlsI	GCNGC	5 cut(s)	232, 274, 418, 457, 460
BmcAI	AGTACT	1 cut(s)	401
Bme18I	GGWCC	1 cut(s)	494
BmgT120I	GGNCC	1 cut(s)	494
BmsI	GCATC	1 cut(s)	488
BoxI	GACNNNNGTC	1 cut(s)	294
BpiI	GAAGAC	1 cut(s)	290
BpmI	CTGGAG	1 cut(s)	108
BpuEI	CTTGAG	1 cut(s)	80
BsaJI	CCNNGG	2 cut(s)	510, 565
Bsc4I	CCNNNNNNNGG	1 cut(s)	412
Bse1I	ACTGG	2 cut(s)	91, 205
Bse3DI	GCAATG	1 cut(s)	318
BseDI	CCNNGG	2 cut(s)	510, 565
BseGI	GGATG	1 cut(s)	201
BseLI	CCNNNNNNNGG	1 cut(s)	412
BseMI	GCAATG	1 cut(s)	318
BseMII	CTCAG	2 cut(s)	435, 489
BseNI	ACTGG	2 cut(s)	91, 205
BseXI	GCAGC	4 cut(s)	242, 259, 428, 445
BsgI	GTGCAG	1 cut(s)	249
BslFI	GGGAC	1 cut(s)	97
BslI	CCNNNNNNNGG	1 cut(s)	412
BsmFI	GGGAC	1 cut(s)	97
BsmI	GAATGC	1 cut(s)	465
Bsp143I	GATC	1 cut(s)	448
BspACI	CCGC	4 cut(s)	164, 406, 444, 456
BspCNI	CTCAG	2 cut(s)	434, 490
BspMI	ACCTGC	2 cut(s)	134, 224
BspTI	CTTAAG	1 cut(s)	253
BsrBI	CCGCTC	1 cut(s)	408
BsrDI	GCAATG	1 cut(s)	318
BsrI	ACTGG	2 cut(s)	91, 205
BssECI	CCNNGG	2 cut(s)	510, 565
BssMI	GATC	1 cut(s)	448
BssT1I	CCWWGG	2 cut(s)	510, 565
Bst4CI	ACNGT	1 cut(s)	296
Bst6I	CTCTTC	1 cut(s)	11
BstAFI	CTTAAG	1 cut(s)	253
BstAPI	GCANNNNNTGC	1 cut(s)	236
BstC8I	GCNNGC	1 cut(s)	463
BstDEI	CTNAG	3 cut(s)	42, 421, 498
BstF5I	GGATG	1 cut(s)	201
BstHHI	GCGC	1 cut(s)	119
BstKTI	GATC	1 cut(s)	451
BstMBI	GATC	1 cut(s)	448
BstMWI	GCNNNNNNNGC	3 cut(s)	116, 236, 452
BstNSI	RCATGY	2 cut(s)	117, 479
BstPAI	GACNNNNGTC	1 cut(s)	294
BstSFI	CTRYAG	1 cut(s)	390
BstV1I	GCAGC	4 cut(s)	242, 259, 428, 445
BstV2I	GAAGAC	1 cut(s)	290
BtgZI	GCGATG	1 cut(s)	91
BtsCI	GGATG	1 cut(s)	201
BveI	ACCTGC	2 cut(s)	134, 224
Cac8I	GCNNGC	1 cut(s)	463
CfoI	GCGC	1 cut(s)	119
Cfr13I	GGNCC	1 cut(s)	494
CseI	GACGC	1 cut(s)	179
Csp6I	GTAC	1 cut(s)	400
CspCI	CAANNNNNGTGG	2 cut(s)	322, 357
CviAII	CATG	3 cut(s)	37, 114, 476
CviQI	GTAC	1 cut(s)	400
DdeI	CTNAG	3 cut(s)	42, 421, 498
DpnI	GATC	1 cut(s)	450
DpnII	GATC	1 cut(s)	448
Eam1104I	CTCTTC	1 cut(s)	11
EarI	CTCTTC	1 cut(s)	11
Eco130I	CCWWGG	2 cut(s)	510, 565
Eco47I	GGWCC	1 cut(s)	494
EcoO109I	RGGNCCY	1 cut(s)	494
EcoRI	GAATTC	1 cut(s)	197
EcoT14I	CCWWGG	2 cut(s)	510, 565
EcoT22I	ATGCAT	1 cut(s)	481
ErhI	CCWWGG	2 cut(s)	510, 565
FaeI	CATG	3 cut(s)	40, 117, 479
FaqI	GGGAC	1 cut(s)	97
FatI	CATG	3 cut(s)	36, 113, 475
Fnu4HI	GCNGC	5 cut(s)	231, 273, 417, 456, 459
FokI	GGATG	1 cut(s)	188
Fsp4HI	GCNGC	5 cut(s)	231, 273, 417, 456, 459
FspBI	CTAG	1 cut(s)	9
FspI	TGCGCA	1 cut(s)	118
GlaI	GCGC	1 cut(s)	118
GluI	GCNGC	5 cut(s)	231, 273, 417, 456, 459
GsuI	CTGGAG	1 cut(s)	108
HgaI	GACGC	1 cut(s)	179
HhaI	GCGC	1 cut(s)	119
Hin1II	CATG	3 cut(s)	40, 117, 479
Hin6I	GCGC	1 cut(s)	117
HinP1I	GCGC	1 cut(s)	117
HinfI	GANTC	1 cut(s)	46
HphI	GGTGA	1 cut(s)	185
Hpy166II	GTNNAC	1 cut(s)	176
Hpy188I	TCNGA	2 cut(s)	424, 484
Hpy188III	TCNNGA	2 cut(s)	194, 470
Hpy8I	GTNNAC	1 cut(s)	176
HpyAV	CCTTC	4 cut(s)	152, 220, 419, 485
HpyCH4III	ACNGT	1 cut(s)	296
HpyCH4V	TGCA	5 cut(s)	25, 131, 143, 230, 479
HpyF10VI	GCNNNNNNNGC	3 cut(s)	116, 236, 452
HpyF3I	CTNAG	3 cut(s)	42, 421, 498
Hsp92II	CATG	3 cut(s)	40, 117, 479
HspAI	GCGC	1 cut(s)	117
Kzo9I	GATC	1 cut(s)	448
LmnI	GCTCC	1 cut(s)	308
Lsp1109I	GCAGC	4 cut(s)	242, 259, 428, 445
LweI	GCATC	1 cut(s)	488
MaeI	CTAG	1 cut(s)	9
MaeIII	GTNAC	1 cut(s)	262
MalI	GATC	1 cut(s)	450
MbiI	CCGCTC	1 cut(s)	408
MboI	GATC	1 cut(s)	448
MboII	GAAGA	2 cut(s)	28, 290
MfeI	CAATTG	1 cut(s)	120
MluCI	AATT	3 cut(s)	120, 197, 369
MlyI	GAGTC	1 cut(s)	40
MnlI	CCTC	4 cut(s)	5, 55, 83, 430
Mph1103I	ATGCAT	1 cut(s)	481
MseI	TTAA	3 cut(s)	242, 254, 601
MslI	CAYNNNNRTG	1 cut(s)	524
MspA1I	CMGCKG	2 cut(s)	446, 458
MspCI	CTTAAG	1 cut(s)	253
MunI	CAATTG	1 cut(s)	120
Mva1269I	GAATGC	1 cut(s)	465
MwoI	GCNNNNNNNGC	3 cut(s)	116, 236, 452
NdeII	GATC	1 cut(s)	448
NlaIII	CATG	3 cut(s)	40, 117, 479
NmuCI	GTSAC	1 cut(s)	262
NsbI	TGCGCA	1 cut(s)	118
NsiI	ATGCAT	1 cut(s)	481
NspI	RCATGY	2 cut(s)	117, 479
OliI	CACNNNNGTG	1 cut(s)	524
PaqCI	CACCTGC	2 cut(s)	134, 224
PctI	GAATGC	1 cut(s)	465
PkrI	GCNGC	5 cut(s)	232, 274, 418, 457, 460
PleI	GAGTC	1 cut(s)	40
PpsI	GAGTC	1 cut(s)	40
PpuMI	RGGWCCY	1 cut(s)	494
PshAI	GACNNNNGTC	1 cut(s)	294
Psp5II	RGGWCCY	1 cut(s)	494
PspPI	GGNCC	1 cut(s)	494
PspPPI	RGGWCCY	1 cut(s)	494
RsaI	GTAC	1 cut(s)	401
RsaNI	GTAC	1 cut(s)	400
RseI	CAYNNNNRTG	1 cut(s)	524
SaqAI	TTAA	3 cut(s)	242, 254, 601
SatI	GCNGC	5 cut(s)	231, 273, 417, 456, 459
Sau3AI	GATC	1 cut(s)	448
Sau96I	GGNCC	1 cut(s)	494
ScaI	AGTACT	1 cut(s)	401
SchI	GAGTC	1 cut(s)	40
SetI	ASST	9 cut(s)	10, 66, 76, 148, 163, 238, 274, 348, 499
SfaNI	GCATC	1 cut(s)	488
SfcI	CTRYAG	1 cut(s)	390
SinI	GGWCC	1 cut(s)	494
SmiMI	CAYNNNNRTG	1 cut(s)	524
SmlI	CTYRAG	2 cut(s)	59, 253
SmoI	CTYRAG	2 cut(s)	59, 253
Sse9I	AATT	3 cut(s)	120, 197, 369
SsiI	CCGC	4 cut(s)	164, 406, 444, 456
SspMI	CTAG	1 cut(s)	9
StyI	CCWWGG	2 cut(s)	510, 565
TaaI	ACNGT	1 cut(s)	296
TasI	AATT	3 cut(s)	120, 197, 369
TatI	WGTACW	1 cut(s)	399
TauI	GCSGC	1 cut(s)	458
Tru1I	TTAA	3 cut(s)	242, 254, 601
Tru9I	TTAA	3 cut(s)	242, 254, 601
TseFI	GTSAC	1 cut(s)	262
TseI	GCWGC	4 cut(s)	230, 272, 416, 458
Tsp45I	GTSAC	1 cut(s)	262
TspDTI	ATGAA	4 cut(s)	94, 190, 328, 381
Vha464I	CTTAAG	1 cut(s)	253
VpaK11BI	GGWCC	1 cut(s)	494
XapI	RAATTY	2 cut(s)	197, 369
XceI	RCATGY	2 cut(s)	117, 479
XspI	CTAG	1 cut(s)	9
ZrmI	AGTACT	1 cut(s)	401
Zsp2I	ATGCAT	1 cut(s)	481

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.