FvH4_5g10501

Equilibrative nucleotide transporter 3-like

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Reverse (-)
5969998 .. 5972273
2276 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g10501.t1

Sequence Viewer

Length: 1299 bp
ATGTCTAAGACTGTCCCTATTGACATCCAGGGCGTTGCCGTGACCGAAATTAGAGAAAGCAATACTCCACCGAGGCATGAGGTTTGTGCTTACAGATTTCAACTCATGAATGTGAGAGATGATATCGATTCTCGAACCCTATTTGCATGGAACAGTGTGGTCACCATAGGGGATTACTATTACATCTTGTTTCCTAAATACCATCCTTCACGGGTTCTTACCCTCATTTATCAACCATTTGCACTTATAGCAATGGCAGCACTAGCTTACAATGAAGCAAAGGTGAATACCCAAAAGCGGATCTTAGCTGGATACTCTATCTTCTTCCTTGGTACCTTGATGCTAATTGTTGTGGATTTAGCTACGTCTGGTAGTGGAGGCGTTCGACCTTATATTGGCATATGTGCCATTGTTGGTGCACTAGGGGTTGCAGGTGCCCATGTCGAGGGTGGGATCGTTGGCGACCTATCTTTTATGTGCCCTGAATTCATCCAGTCTTTCTTATCTGGATTGGCTGCAGCAGGTGCTTTAACCTCAGTCATGAGGCTGATAACAAAGGCGCTCTTTGATAAATACAACAATGGTCTTCGCAAGGGGGCAATGTTATTCCTGTCGATTTCCACATTCATTCAGTTGGTGTGTATTCTTCTATATGCAATTTACTTCCCTAGATTGCCTATAGTGAAGTACTACCGCTCAAAAGCAGCCTCGGAAGGCTCTAAAACTGTATCAGCTGATCTTGCAACTGCTGGCATCCAAACAAATGCAGACATTGAAGTCCAAAACAATGCTGCTCGTCTACAACGACTGAGCAATAAGCAACTGTTCAAACAAAATCTAGATTATGGACTTGGCTTGTTTTTGACATATGCTCTAACATTATCAATATTCCCTGGTTTCCTATATGAAAATACTCAAAACCACAAGCTCGGCTCGTGGTATCCACTTGTTCTGATCACAGTGTACAATGCAGTGGATTTGGCATCGAGGTACATACCTCTTGTGAAATGTCTGACGATGGAATCCAGAAAGGGATTAATGATTGGAATTCTATTGCGAATGCTGTTTGTGCCAGCATTCTACTTCACAGCAAAATATGGTGACCTGGGATGGATGATGATGCTCACATCACTCCTAGGATTTTCGAATGGCTACTTTACTGTATGTGTCATGATAGTGGCACCCAGAGGTTACCAGGGATCTGAGCAGAATGCCTTGGGAAATTTGCTTGTACTGTGGCTTTTCTTCGGCGTATTTGCAGGGCTTTCCATCGACTGGTTATGGCTAGCTGATTGGTGA

Protein Analysis

433

Amino Acids

47.94

Weight (kDa)

9.03

Isoelectric Point (pI)

28.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nucleoside_tran PF01733 140 - 428 8.5e-33 Nucleoside transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 422, 512
AasI GACNNNNNNGTC 1 cut(s) 776
Acc36I ACCTGC 2 cut(s) 422, 512
Acc65I GGTACC 1 cut(s) 332
AccB1I GGYRCC 3 cut(s) 332, 434, 1180
AccB7I CCANNNNNTGG 1 cut(s) 1275
AccBSI CCGCTC 1 cut(s) 696
AccI GTMKAC 1 cut(s) 799
AciI CCGC 2 cut(s) 298, 694
AclWI GGATC 3 cut(s) 308, 461, 1207
AcsI RAATTY 3 cut(s) 485, 1047, 1222
AfaI GTAC 5 cut(s) 334, 689, 965, 992, 1233
AfiI CCNNNNNNNGG 4 cut(s) 297, 395, 445, 1275
AgsI TTSAA 3 cut(s) 101, 776, 829
AjnI CCWGG 4 cut(s) 27, 892, 1104, 1194
AluBI AGCT 6 cut(s) 266, 308, 362, 734, 928, 1289
AluI AGCT 6 cut(s) 266, 308, 362, 734, 928, 1289
Alw21I GWGCWC 1 cut(s) 421
Alw44I GTGCAC 1 cut(s) 417
AlwI GGATC 3 cut(s) 308, 461, 1207
ApaLI GTGCAC 1 cut(s) 417
ApeKI GCWGC 5 cut(s) 257, 515, 518, 704, 791
ApoI RAATTY 3 cut(s) 485, 1047, 1222
AseI ATTAAT 1 cut(s) 1037
Asp718I GGTACC 1 cut(s) 332
AspA2I CCTAGG 1 cut(s) 1135
AspLEI GCGC 1 cut(s) 562
AsuHPI GGTGA 3 cut(s) 154, 295, 1112
AsuII TTCGAA 1 cut(s) 1145
AsuNHI GCTAGC 1 cut(s) 1285
AvrII CCTAGG 1 cut(s) 1135
BaeGI GKGCMC 3 cut(s) 421, 439, 482
BanI GGYRCC 3 cut(s) 332, 434, 1180
BauI CACGAG 1 cut(s) 934
BbsI GAAGAC 1 cut(s) 578
Bbv12I GWGCWC 1 cut(s) 421
BbvI GCAGC 5 cut(s) 269, 502, 530, 716, 778
BccI CCATC 4 cut(s) 210, 1012, 1104, 1277
BceAI ACGGC 1 cut(s) 23
BciT130I CCWGG 4 cut(s) 29, 894, 1106, 1196
BciVI GTATCC 2 cut(s) 305, 951
BclI TGATCA 1 cut(s) 954
BfaI CTAG 6 cut(s) 263, 422, 669, 839, 1136, 1286
BfmI CTRYAG 2 cut(s) 516, 678
BfoI RGCGCY 1 cut(s) 563
BfuAI ACCTGC 2 cut(s) 422, 512
BfuI GTATCC 2 cut(s) 305, 951
BisI GCNGC 5 cut(s) 258, 516, 519, 705, 792
BlnI CCTAGG 1 cut(s) 1135
BlsI GCNGC 5 cut(s) 259, 517, 520, 706, 793
BmcAI AGTACT 1 cut(s) 689
Bme1390I CCNGG 4 cut(s) 29, 894, 1106, 1196
BmiI GGNNCC 3 cut(s) 334, 436, 1182
BmrFI CCNGG 4 cut(s) 29, 894, 1106, 1196
BmsI GCATC 4 cut(s) 330, 762, 992, 1110
BmtI GCTAGC 1 cut(s) 1289
BpiI GAAGAC 1 cut(s) 578
Bpu14I TTCGAA 1 cut(s) 1145
Bsa29I ATCGAT 1 cut(s) 126
BsaJI CCNNGG 9 cut(s) 28, 71, 328, 708, 892, 1105, 1135, 1195, 1215
Bsc4I CCNNNNNNNGG 4 cut(s) 297, 395, 445, 1275
Bse1I ACTGG 2 cut(s) 493, 1280
Bse3DI GCAATG 2 cut(s) 258, 606
BseBI CCWGG 4 cut(s) 29, 894, 1106, 1196
BseCI ATCGAT 1 cut(s) 126
BseDI CCNNGG 9 cut(s) 28, 71, 328, 708, 892, 1105, 1135, 1195, 1215
BseGI GGATG 6 cut(s) 24, 202, 489, 753, 1115, 1119
BseLI CCNNNNNNNGG 4 cut(s) 297, 395, 445, 1275
BseMI GCAATG 2 cut(s) 258, 606
BseMII CTCAG 3 cut(s) 549, 800, 1194
BseNI ACTGG 2 cut(s) 493, 1280
BseSI GKGCMC 3 cut(s) 421, 439, 482
BseXI GCAGC 5 cut(s) 269, 502, 530, 716, 778
BshNI GGYRCC 3 cut(s) 332, 434, 1180
BshVI ATCGAT 1 cut(s) 126
BsiHKAI GWGCWC 1 cut(s) 421
BslI CCNNNNNNNGG 4 cut(s) 297, 395, 445, 1275
BsmI GAATGC 3 cut(s) 1065, 1076, 1216
Bsp119I TTCGAA 1 cut(s) 1145
Bsp1286I GDGCHC 3 cut(s) 421, 439, 482
Bsp1407I TGTACA 1 cut(s) 963
Bsp143I GATC 5 cut(s) 300, 453, 736, 954, 1199
BspACI CCGC 2 cut(s) 298, 694
BspCNI CTCAG 3 cut(s) 548, 801, 1195
BspDI ATCGAT 1 cut(s) 126
BspHI TCATGA 3 cut(s) 105, 540, 1170
BspLI GGNNCC 3 cut(s) 334, 436, 1182
BspMAI CTGCAG 1 cut(s) 520
BspMI ACCTGC 2 cut(s) 422, 512
BspOI GCTAGC 1 cut(s) 1289
BspPI GGATC 3 cut(s) 308, 461, 1207
BspT104I TTCGAA 1 cut(s) 1145
BspT107I GGYRCC 3 cut(s) 332, 434, 1180
BsrBI CCGCTC 1 cut(s) 696
BsrDI GCAATG 2 cut(s) 258, 606
BsrGI TGTACA 1 cut(s) 963
BsrI ACTGG 2 cut(s) 493, 1280
BssECI CCNNGG 9 cut(s) 28, 71, 328, 708, 892, 1105, 1135, 1195, 1215
BssMI GATC 5 cut(s) 300, 453, 736, 954, 1199
BssSI CACGAG 1 cut(s) 934
BssT1I CCWWGG 3 cut(s) 328, 1135, 1215
Bst2BI CACGAG 1 cut(s) 934
Bst2UI CCWGG 4 cut(s) 29, 894, 1106, 1196
Bst4CI ACNGT 7 cut(s) 13, 155, 727, 825, 961, 1162, 1236
BstAPI GCANNNNNTGC 1 cut(s) 524
BstAUI TGTACA 1 cut(s) 963
BstBI TTCGAA 1 cut(s) 1145
BstC8I GCNNGC 3 cut(s) 751, 1074, 1287
BstDEI CTNAG 5 cut(s) 6, 304, 535, 809, 1203
BstEII GGTNACC 3 cut(s) 160, 1100, 1190
BstF5I GGATG 6 cut(s) 24, 202, 489, 753, 1115, 1119
BstH2I RGCGCY 1 cut(s) 563
BstHHI GCGC 1 cut(s) 562
BstKTI GATC 5 cut(s) 303, 456, 739, 957, 1202
BstMBI GATC 5 cut(s) 300, 453, 736, 954, 1199
BstMWI GCNNNNNNNGC 6 cut(s) 248, 257, 263, 524, 740, 1069
BstNI CCWGG 4 cut(s) 29, 894, 1106, 1196
BstPI GGTNACC 3 cut(s) 160, 1100, 1190
BstSCI CCNGG 4 cut(s) 27, 892, 1104, 1194
BstSFI CTRYAG 2 cut(s) 516, 678
BstSLI GKGCMC 3 cut(s) 421, 439, 482
BstV1I GCAGC 5 cut(s) 269, 502, 530, 716, 778
BstV2I GAAGAC 1 cut(s) 578
BstX2I RGATCY 2 cut(s) 300, 1199
BstYI RGATCY 2 cut(s) 300, 1199
Bsu15I ATCGAT 1 cut(s) 126
BsuI GTATCC 2 cut(s) 305, 951
BsuTUI ATCGAT 1 cut(s) 126
BtsCI GGATG 6 cut(s) 24, 202, 489, 753, 1115, 1119
BtsI GCAGTG 1 cut(s) 978
BtsIMutI CAGTG 3 cut(s) 160, 966, 978
BveI ACCTGC 2 cut(s) 422, 512
Cac8I GCNNGC 3 cut(s) 751, 1074, 1287
CciI TCATGA 3 cut(s) 105, 540, 1170
CfoI GCGC 1 cut(s) 562
ClaI ATCGAT 1 cut(s) 126
Csp6I GTAC 5 cut(s) 333, 688, 964, 991, 1232
CviAII CATG 6 cut(s) 77, 106, 147, 440, 541, 1171
CviQI GTAC 5 cut(s) 333, 688, 964, 991, 1232
DdeI CTNAG 5 cut(s) 6, 304, 535, 809, 1203
DpnI GATC 5 cut(s) 302, 455, 738, 956, 1201
DpnII GATC 5 cut(s) 300, 453, 736, 954, 1199
DrdI GACNNNNNNGTC 1 cut(s) 776
DseDI GACNNNNNNGTC 1 cut(s) 776
Eco130I CCWWGG 3 cut(s) 328, 1135, 1215
Eco32I GATATC 1 cut(s) 124
Eco91I GGTNACC 3 cut(s) 160, 1100, 1190
EcoO65I GGTNACC 3 cut(s) 160, 1100, 1190
EcoRI GAATTC 2 cut(s) 485, 1047
EcoRII CCWGG 4 cut(s) 27, 892, 1104, 1194
EcoRV GATATC 1 cut(s) 124
EcoT14I CCWWGG 3 cut(s) 328, 1135, 1215
ErhI CCWWGG 3 cut(s) 328, 1135, 1215
FaeI CATG 6 cut(s) 80, 109, 150, 443, 544, 1174
FalI AAGNNNNNCTT 4 cut(s) 287, 319, 548, 580
FatI CATG 6 cut(s) 76, 105, 146, 439, 540, 1170
FauNDI CATATG 2 cut(s) 401, 868
FbaI TGATCA 1 cut(s) 954
FblI GTMKAC 1 cut(s) 799
Fnu4HI GCNGC 5 cut(s) 258, 516, 519, 705, 792
FokI GGATG 6 cut(s) 11, 189, 476, 740, 1122, 1126
Fsp4HI GCNGC 5 cut(s) 258, 516, 519, 705, 792
FspBI CTAG 6 cut(s) 263, 422, 669, 839, 1136, 1286
GlaI GCGC 1 cut(s) 561
GluI GCNGC 5 cut(s) 258, 516, 519, 705, 792
HaeII RGCGCY 1 cut(s) 563
HhaI GCGC 1 cut(s) 562
Hin1II CATG 6 cut(s) 80, 109, 150, 443, 544, 1174
Hin6I GCGC 1 cut(s) 560
HinP1I GCGC 1 cut(s) 560
HinfI GANTC 2 cut(s) 128, 1022
HphI GGTGA 3 cut(s) 154, 295, 1112
Hpy166II GTNNAC 3 cut(s) 419, 800, 964
Hpy188I TCNGA 4 cut(s) 712, 954, 1014, 1204
Hpy188III TCNNGA 7 cut(s) 106, 132, 507, 541, 839, 1026, 1171
Hpy8I GTNNAC 3 cut(s) 419, 800, 964
HpyAV CCTTC 2 cut(s) 216, 707
HpyCH4III ACNGT 7 cut(s) 13, 155, 727, 825, 961, 1162, 1236
HpyCH4IV ACGT 1 cut(s) 365
HpyF10VI GCNNNNNNNGC 6 cut(s) 248, 257, 263, 524, 740, 1069
HpyF3I CTNAG 5 cut(s) 6, 304, 535, 809, 1203
HpySE526I ACGT 1 cut(s) 365
Hsp92II CATG 6 cut(s) 80, 109, 150, 443, 544, 1174
HspAI GCGC 1 cut(s) 560
KpnI GGTACC 1 cut(s) 336
Ksp22I TGATCA 1 cut(s) 954
Kzo9I GATC 5 cut(s) 300, 453, 736, 954, 1199
Lsp1109I GCAGC 5 cut(s) 269, 502, 530, 716, 778
LweI GCATC 4 cut(s) 330, 762, 992, 1110
MaeI CTAG 6 cut(s) 263, 422, 669, 839, 1136, 1286
MaeII ACGT 1 cut(s) 365
MaeIII GTNAC 4 cut(s) 40, 160, 1100, 1190
MalI GATC 5 cut(s) 302, 455, 738, 956, 1201
MbiI CCGCTC 1 cut(s) 696
MboI GATC 5 cut(s) 300, 453, 736, 954, 1199
MboII GAAGA 5 cut(s) 313, 316, 578, 638, 1237
MflI RGATCY 2 cut(s) 300, 1199
MhlI GDGCHC 3 cut(s) 421, 439, 482
MluCI AATT 6 cut(s) 48, 345, 485, 657, 1047, 1222
MseI TTAA 2 cut(s) 530, 1037
MslI CAYNNNNRTG 2 cut(s) 110, 1175
MspA1I CMGCKG 1 cut(s) 734
MspR9I CCNGG 4 cut(s) 29, 894, 1106, 1196
Mva1269I GAATGC 3 cut(s) 1065, 1076, 1216
MvaI CCWGG 4 cut(s) 29, 894, 1106, 1196
MwoI GCNNNNNNNGC 6 cut(s) 248, 257, 263, 524, 740, 1069
NdeI CATATG 2 cut(s) 401, 868
NdeII GATC 5 cut(s) 300, 453, 736, 954, 1199
NheI GCTAGC 1 cut(s) 1285
NlaIII CATG 6 cut(s) 80, 109, 150, 443, 544, 1174
NlaIV GGNNCC 3 cut(s) 334, 436, 1182
NmeAIII GCCGAG 1 cut(s) 909
NmuCI GTSAC 3 cut(s) 40, 160, 1100
NspV TTCGAA 1 cut(s) 1145
PagI TCATGA 3 cut(s) 105, 540, 1170
PaqCI CACCTGC 2 cut(s) 422, 512
PcsI WCGNNNNNNNCGW 1 cut(s) 802
PctI GAATGC 3 cut(s) 1065, 1076, 1216
PfeI GAWTC 2 cut(s) 128, 1022
PflMI CCANNNNNTGG 1 cut(s) 1275
PkrI GCNGC 5 cut(s) 259, 517, 520, 706, 793
PshBI ATTAAT 1 cut(s) 1037
Psp6I CCWGG 4 cut(s) 27, 892, 1104, 1194
PspEI GGTNACC 3 cut(s) 160, 1100, 1190
PspGI CCWGG 4 cut(s) 27, 892, 1104, 1194
PspN4I GGNNCC 3 cut(s) 334, 436, 1182
PstI CTGCAG 1 cut(s) 520
PsuI RGATCY 2 cut(s) 300, 1199
PvuII CAGCTG 1 cut(s) 734
RsaI GTAC 5 cut(s) 334, 689, 965, 992, 1233
RsaNI GTAC 5 cut(s) 333, 688, 964, 991, 1232
RseI CAYNNNNRTG 2 cut(s) 110, 1175
SaqAI TTAA 2 cut(s) 530, 1037
SatI GCNGC 5 cut(s) 258, 516, 519, 705, 792
Sau3AI GATC 5 cut(s) 300, 453, 736, 954, 1199
ScaI AGTACT 1 cut(s) 689
ScrFI CCNGG 4 cut(s) 29, 894, 1106, 1196
SduI GDGCHC 3 cut(s) 421, 439, 482
SfaNI GCATC 4 cut(s) 330, 762, 992, 1110
SfcI CTRYAG 2 cut(s) 516, 678
SfuI TTCGAA 1 cut(s) 1145
SmiMI CAYNNNNRTG 2 cut(s) 110, 1175
Sse9I AATT 6 cut(s) 48, 345, 485, 657, 1047, 1222
SsiI CCGC 2 cut(s) 298, 694
SspI AATATT 1 cut(s) 888
SspMI CTAG 6 cut(s) 263, 422, 669, 839, 1136, 1286
StyD4I CCNGG 4 cut(s) 27, 892, 1104, 1194
StyI CCWWGG 3 cut(s) 328, 1135, 1215
TaaI ACNGT 7 cut(s) 13, 155, 727, 825, 961, 1162, 1236
TaiI ACGT 1 cut(s) 368
TaqI TCGA 8 cut(s) 126, 133, 385, 444, 614, 986, 1145, 1272
TaqII GACCGA 1 cut(s) 59
TasI AATT 6 cut(s) 48, 345, 485, 657, 1047, 1222
TatI WGTACW 3 cut(s) 687, 963, 1231
TfiI GAWTC 2 cut(s) 128, 1022
Tru1I TTAA 2 cut(s) 530, 1037
Tru9I TTAA 2 cut(s) 530, 1037
TscAI CASTG 3 cut(s) 160, 966, 978
TseFI GTSAC 3 cut(s) 40, 160, 1100
TseI GCWGC 5 cut(s) 257, 515, 518, 704, 791
Tsp45I GTSAC 3 cut(s) 40, 160, 1100
TspDTI ATGAA 5 cut(s) 122, 288, 478, 616, 921
TspRI CASTG 3 cut(s) 160, 966, 978
Van91I CCANNNNNTGG 1 cut(s) 1275
VneI GTGCAC 1 cut(s) 417
VspI ATTAAT 1 cut(s) 1037
XapI RAATTY 3 cut(s) 485, 1047, 1222
XbaI TCTAGA 1 cut(s) 838
XcmI CCANNNNNNNNNTGG 1 cut(s) 446
XmaJI CCTAGG 1 cut(s) 1135
XmiI GTMKAC 1 cut(s) 799
XspI CTAG 6 cut(s) 263, 422, 669, 839, 1136, 1286
ZrmI AGTACT 1 cut(s) 689
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.