Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0001163

Physical Location & Seq

Genomic Coordinates Reverse (-)

30339754 .. 30341838

Gene Structure 2085 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g30120.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1155 bp

ATGATCAGTATAAGTGATTACTACTATAACTTGTTTCCGACTTACCATCCTTCGCGGGTTCTCACCATTGTTTATCAACCATTTGCACTTGTAACAATGGCAACACTAGCATACCATGAAGCAAAGGTTGACACCAGGAAGCGGAATTTAATTGGATACGCTCTCTTCTTCCTCGCTACCTTGATGCTTATAATTGTGGATGTAGCCACATCTGCGGGCGGAGGAATTGGACCTTATATTGGTATATGCATATGCGTTGGTGTATTTGGGGTTGCAGATGCCCATGTTCAAGGTGGAATGGTCGGAGACCTTTCGTTTATGCGCCCGGAATTCATCCAGTCCTTCTTTGCTGGCTTGGCTGCATCAGGCGCTCTAACCTCCGGCTTGAGGCTGATAACAAAAGCTGCATTTGAGAAGTCACATGATGGTCTTCGCAAGGGGACGATGTTGTTCTTGACAATTTCCACATTCATTGAGTTTCTCTGTATTCTTCTATATGCAATTTACTTCCCGAGATTGCCTATAGTGAAGTACTACCGCTCAAAGGCAGCTTCCGAAGGCTCTAAAACTGTAACCGCTGATCTTGCTGCTGCTGGAATCCAAACACAAGAAGACATAGAAGTCTCAAACGATGCCAAAGTTGTTCCAACTCGATTGAGCACTATGCAAATATTCAAGCAGAATATAGATTTTTGCCTTGACTTGTTTCTTATATATGTGCTGACATTATCAATCTTCCCTGGTTTCATATTTGAAAATACCGGAAAGCATCAGTTGGGGTCATGGTATCCGCTTGTTCTGTTTGCAATGTACAATGTGTTGGATTTGATATCACGATACATACCTCTCATCAAATGCCTGAAGATAGAGTCCAGAAAGGGCCTCCTGATTGCAATCCTATCACGTTTCCTCTTCGTTCCAGCGTACTACTTCACCGGAAAGTACGCTGACCAAGGGTGGATGATCTTGCTGACATCAATCTTAGGATTAACAAATGGTTATCTAACTGTCTGTGTCATGACAGTGGCACCCAAAGGCTACAACGGACCTGAGCAAAATGCCTTGGGAAATATACTTGTTCTGTGTCTTTTGGGCGGCATATTTGCAGGGGTTTGCCTTGACTGGTTGTGGCTAATTGGTAAAGGCACATTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005337 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0015858 GO:0015931 GO:0015932 GO:0016020 GO:0022857 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:1901264 GO:1901505 GO:1901642

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nucleoside_tran

Protein Analysis

385

Amino Acids

42.4

Weight (kDa)

8.64

Isoelectric Point (pI)

32.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001163)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61630 AT4G05110 AT4G05110 AT4G05110 AT4G05120 AT4G05120 AT4G05130 AT4G05140
fragaria_vesca	FvH4_3g03740 FvH4_3g03740 FvH4_3g03740 FvH4_3g03740 FvH4_3g03750 FvH4_5g10501
malus_domestica	MD05G1326900.v1.1 MD10G1305000.v1.1
prunus_persica	Prupe.4G034600_v2.0.a1
pyrus_communis	pycom05g30120 pycom10g25750
rosa_chinensis	RchiOBHm_Chr5g0005801 RchiOBHm_Chr5g0005811 RchiOBHm_Chr5g0005821 RchiOBHm_Chr7g0187631
rosa_laevigata	RLG00000004764 RLG00000031327 RLG00000031328 RLG00000031329
rosa_multiflora	Rmu_sc0002694.1_g000001
rosa_roxburghii	Rroxscaffold_1G00070040 Rroxscaffold_1G00070050 Rroxscaffold_1G00070060 Rroxscaffold_3G00267210
rosa_rugosa	Rorug04G0418200 Rorug04G0418300 Rorug04G0418400 Rorug04G0418500 Rorug04G0418500 Rorug04G0418600 Rorug04G0418700 Rorug06G0483300
rosa_samantha	Rh5AG045700 Rh5AG045800 Rh5AG045900 Rh5BG044400 Rh5BG044600 Rh5CG053200 Rh5CG053400 Rh5CG053500 Rh5DG044300 Rh7AG088200 Rh7BG089500 Rh7CG088800 Rh7DG090500
rosa_wichuraiana	Rw0G002660 Rw5G004600 Rw5G004610 Rw5G004620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	191
AasI	GACNNNNNNGTC	1 cut(s)	620
AccB1I	GGYRCC	1 cut(s)	1027
AccBSI	CCGCTC	1 cut(s)	540
AccII	CGCG	1 cut(s)	55
AciI	CCGC	8 cut(s)	55, 142, 215, 219, 538, 576, 791, 1095
AcsI	RAATTY	2 cut(s)	145, 329
AcuI	CTGAAG	1 cut(s)	881
AfaI	GTAC	4 cut(s)	533, 812, 926, 944
AfiI	CCNNNNNNNGG	4 cut(s)	141, 239, 387, 544
AgsI	TTSAA	3 cut(s)	290, 676, 755
AjnI	CCWGG	2 cut(s)	134, 739
AluBI	AGCT	2 cut(s)	404, 551
AluI	AGCT	2 cut(s)	404, 551
Alw21I	GWGCWC	1 cut(s)	662
Alw26I	GTCTC	2 cut(s)	300, 628
Ama87I	CYCGRG	1 cut(s)	511
AoxI	GGCC	1 cut(s)	880
ApeKI	GCWGC	5 cut(s)	359, 404, 548, 587, 590
ApoI	RAATTY	2 cut(s)	145, 329
AspLEI	GCGC	2 cut(s)	324, 371
AspS9I	GGNCC	3 cut(s)	230, 880, 1046
AsuC2I	CCSGG	1 cut(s)	326
AsuHPI	GGTGA	2 cut(s)	55, 925
AvaI	CYCGRG	1 cut(s)	511
AvaII	GGWCC	2 cut(s)	230, 1046
BanI	GGYRCC	1 cut(s)	1027
BbsI	GAAGAC	2 cut(s)	422, 618
Bbv12I	GWGCWC	1 cut(s)	662
BbvI	GCAGC	5 cut(s)	346, 391, 560, 574, 577
BccI	CCATC	2 cut(s)	54, 419
BciT130I	CCWGG	2 cut(s)	136, 741
BciVI	GTATCC	2 cut(s)	149, 798
BclI	TGATCA	1 cut(s)	3
BcnI	CCSGG	1 cut(s)	326
BcoDI	GTCTC	2 cut(s)	300, 628
BfaI	CTAG	1 cut(s)	107
BfmI	CTRYAG	1 cut(s)	522
BfoI	RGCGCY	1 cut(s)	372
BfuI	GTATCC	2 cut(s)	149, 798
BisI	GCNGC	6 cut(s)	360, 405, 549, 588, 591, 1096
BlsI	GCNGC	6 cut(s)	361, 406, 550, 589, 592, 1097
BmcAI	AGTACT	1 cut(s)	533
Bme1390I	CCNGG	3 cut(s)	136, 326, 741
Bme18I	GGWCC	2 cut(s)	230, 1046
BmeT110I	CYCGRG	1 cut(s)	511
BmgT120I	GGNCC	3 cut(s)	230, 880, 1046
BmiI	GGNNCC	1 cut(s)	1029
BmrFI	CCNGG	3 cut(s)	136, 326, 741
BmsI	GCATC	5 cut(s)	174, 268, 371, 622, 778
BpiI	GAAGAC	2 cut(s)	422, 618
Bpu10I	CCTNAGC	1 cut(s)	1050
BpuEI	CTTGAG	1 cut(s)	406
BpuMI	CCSGG	1 cut(s)	326
BsaBI	GATNNNNATC	1 cut(s)	893
BsaI	GGTCTC	1 cut(s)	300
BsaJI	CCNNGG	3 cut(s)	739, 952, 1062
BsaWI	WCCGGW	2 cut(s)	761, 935
Bsc4I	CCNNNNNNNGG	4 cut(s)	141, 239, 387, 544
Bse1I	ACTGG	2 cut(s)	337, 1127
Bse3DI	GCAATG	1 cut(s)	813
Bse8I	GATNNNNATC	1 cut(s)	893
BseBI	CCWGG	2 cut(s)	136, 741
BseDI	CCNNGG	3 cut(s)	739, 952, 1062
BseGI	GGATG	4 cut(s)	46, 205, 333, 966
BseJI	GATNNNNATC	1 cut(s)	893
BseLI	CCNNNNNNNGG	4 cut(s)	141, 239, 387, 544
BseMI	GCAATG	1 cut(s)	813
BseMII	CTCAG	1 cut(s)	1041
BseNI	ACTGG	2 cut(s)	337, 1127
BseXI	GCAGC	5 cut(s)	346, 391, 560, 574, 577
Bsh1236I	CGCG	1 cut(s)	55
BshFI	GGCC	1 cut(s)	882
BshNI	GGYRCC	1 cut(s)	1027
BsiHKAI	GWGCWC	1 cut(s)	662
BsiHKCI	CYCGRG	1 cut(s)	511
BsiSI	CCGG	4 cut(s)	326, 381, 762, 936
BslFI	GGGAC	1 cut(s)	454
BslI	CCNNNNNNNGG	4 cut(s)	141, 239, 387, 544
BsmAI	GTCTC	2 cut(s)	300, 628
BsmFI	GGGAC	1 cut(s)	454
BsnI	GGCC	1 cut(s)	882
Bso31I	GGTCTC	1 cut(s)	300
BsoBI	CYCGRG	1 cut(s)	511
Bsp1286I	GDGCHC	1 cut(s)	662
Bsp1407I	TGTACA	1 cut(s)	810
Bsp143I	GATC	3 cut(s)	3, 580, 963
BspACI	CCGC	8 cut(s)	55, 142, 215, 219, 538, 576, 791, 1095
BspANI	GGCC	1 cut(s)	882
BspCNI	CTCAG	1 cut(s)	1042
BspFNI	CGCG	1 cut(s)	55
BspHI	TCATGA	1 cut(s)	1017
BspLI	GGNNCC	1 cut(s)	1029
BspT107I	GGYRCC	1 cut(s)	1027
BspTNI	GGTCTC	1 cut(s)	300
BsrBI	CCGCTC	1 cut(s)	540
BsrDI	GCAATG	1 cut(s)	813
BsrGI	TGTACA	1 cut(s)	810
BsrI	ACTGG	2 cut(s)	337, 1127
BssECI	CCNNGG	3 cut(s)	739, 952, 1062
BssMI	GATC	3 cut(s)	3, 580, 963
BssT1I	CCWWGG	2 cut(s)	952, 1062
Bst2UI	CCWGG	2 cut(s)	136, 741
Bst4CI	ACNGT	3 cut(s)	571, 1009, 1024
Bst6I	CTCTTC	2 cut(s)	170, 917
BstAUI	TGTACA	1 cut(s)	810
BstC8I	GCNNGC	2 cut(s)	217, 352
BstDEI	CTNAG	2 cut(s)	982, 1050
BstF5I	GGATG	4 cut(s)	46, 205, 333, 966
BstFNI	CGCG	1 cut(s)	55
BstH2I	RGCGCY	1 cut(s)	372
BstHHI	GCGC	2 cut(s)	324, 371
BstKTI	GATC	3 cut(s)	6, 583, 966
BstMAI	GTCTC	2 cut(s)	300, 628
BstMBI	GATC	3 cut(s)	3, 580, 963
BstMWI	GCNNNNNNNGC	5 cut(s)	107, 212, 356, 368, 584
BstNI	CCWGG	2 cut(s)	136, 741
BstSCI	CCNGG	3 cut(s)	134, 324, 739
BstSFI	CTRYAG	1 cut(s)	522
BstUI	CGCG	1 cut(s)	55
BstV1I	GCAGC	5 cut(s)	346, 391, 560, 574, 577
BstV2I	GAAGAC	2 cut(s)	422, 618
BsuI	GTATCC	2 cut(s)	149, 798
BsuRI	GGCC	1 cut(s)	882
BtsCI	GGATG	4 cut(s)	46, 205, 333, 966
BtsIMutI	CAGTG	1 cut(s)	1029
Cac8I	GCNNGC	2 cut(s)	217, 352
CciI	TCATGA	1 cut(s)	1017
CfoI	GCGC	2 cut(s)	324, 371
Cfr13I	GGNCC	3 cut(s)	230, 880, 1046
Csp6I	GTAC	4 cut(s)	532, 811, 925, 943
CspCI	CAANNNNNGTGG	2 cut(s)	454, 489
CviAII	CATG	5 cut(s)	116, 284, 422, 783, 1018
CviQI	GTAC	4 cut(s)	532, 811, 925, 943
DdeI	CTNAG	2 cut(s)	982, 1050
DpnI	GATC	3 cut(s)	5, 582, 965
DpnII	GATC	3 cut(s)	3, 580, 963
DrdI	GACNNNNNNGTC	1 cut(s)	620
DseDI	GACNNNNNNGTC	1 cut(s)	620
Eam1104I	CTCTTC	2 cut(s)	170, 917
EarI	CTCTTC	2 cut(s)	170, 917
EciI	GGCGGA	1 cut(s)	234
Eco130I	CCWWGG	2 cut(s)	952, 1062
Eco31I	GGTCTC	1 cut(s)	300
Eco32I	GATATC	1 cut(s)	831
Eco47I	GGWCC	2 cut(s)	230, 1046
Eco57I	CTGAAG	1 cut(s)	881
Eco88I	CYCGRG	1 cut(s)	511
EcoO109I	RGGNCCY	1 cut(s)	880
EcoRI	GAATTC	1 cut(s)	329
EcoRII	CCWGG	2 cut(s)	134, 739
EcoRV	GATATC	1 cut(s)	831
EcoT14I	CCWWGG	2 cut(s)	952, 1062
EcoT22I	ATGCAT	1 cut(s)	251
ErhI	CCWWGG	2 cut(s)	952, 1062
FaeI	CATG	5 cut(s)	119, 287, 425, 786, 1021
FaqI	GGGAC	1 cut(s)	454
FatI	CATG	5 cut(s)	115, 283, 421, 782, 1017
FauI	CCCGC	2 cut(s)	48, 208
FauNDI	CATATG	1 cut(s)	251
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	6 cut(s)	360, 405, 549, 588, 591, 1096
FokI	GGATG	4 cut(s)	33, 212, 320, 973
Fsp4HI	GCNGC	6 cut(s)	360, 405, 549, 588, 591, 1096
FspBI	CTAG	1 cut(s)	107
GlaI	GCGC	2 cut(s)	323, 370
GluI	GCNGC	6 cut(s)	360, 405, 549, 588, 591, 1096
HaeII	RGCGCY	1 cut(s)	372
HaeIII	GGCC	1 cut(s)	882
HapII	CCGG	4 cut(s)	326, 381, 762, 936
HhaI	GCGC	2 cut(s)	324, 371
Hin1II	CATG	5 cut(s)	119, 287, 425, 786, 1021
Hin6I	GCGC	2 cut(s)	322, 369
HinP1I	GCGC	2 cut(s)	322, 369
HincII	GTYRAC	1 cut(s)	130
HindII	GTYRAC	1 cut(s)	130
HinfI	GANTC	2 cut(s)	597, 869
HpaII	CCGG	4 cut(s)	326, 381, 762, 936
HphI	GGTGA	2 cut(s)	55, 925
Hpy166II	GTNNAC	1 cut(s)	130
Hpy188I	TCNGA	3 cut(s)	39, 305, 556
Hpy188III	TCNNGA	6 cut(s)	454, 511, 834, 873, 886, 1018
Hpy8I	GTNNAC	1 cut(s)	130
HpyAV	CCTTC	3 cut(s)	60, 352, 551
HpyCH4III	ACNGT	3 cut(s)	571, 1009, 1024
HpyCH4IV	ACGT	1 cut(s)	904
HpyF10VI	GCNNNNNNNGC	5 cut(s)	107, 212, 356, 368, 584
HpyF3I	CTNAG	2 cut(s)	982, 1050
HpySE526I	ACGT	1 cut(s)	904
Hsp92II	CATG	5 cut(s)	119, 287, 425, 786, 1021
HspAI	GCGC	2 cut(s)	322, 369
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	3 cut(s)	3, 580, 963
Lsp1109I	GCAGC	5 cut(s)	346, 391, 560, 574, 577
LweI	GCATC	5 cut(s)	174, 268, 371, 622, 778
MaeI	CTAG	1 cut(s)	107
MaeII	ACGT	1 cut(s)	904
MaeIII	GTNAC	3 cut(s)	91, 417, 571
MalI	GATC	3 cut(s)	5, 582, 965
MbiI	CCGCTC	1 cut(s)	540
MboI	GATC	3 cut(s)	3, 580, 963
MboII	GAAGA	8 cut(s)	157, 160, 422, 482, 623, 727, 874, 904
MhlI	GDGCHC	1 cut(s)	662
MluCI	AATT	8 cut(s)	145, 150, 192, 225, 329, 459, 501, 1134
MlyI	GAGTC	1 cut(s)	878
MmeI	TCCRAC	4 cut(s)	62, 283, 671, 801
MnlI	CCTC	7 cut(s)	182, 215, 381, 388, 855, 893, 920
Mph1103I	ATGCAT	1 cut(s)	251
MseI	TTAA	2 cut(s)	149, 989
MslI	CAYNNNNRTG	1 cut(s)	1022
MspA1I	CMGCKG	1 cut(s)	578
MspI	CCGG	4 cut(s)	326, 381, 762, 936
MspR9I	CCNGG	3 cut(s)	136, 326, 741
MvaI	CCWGG	2 cut(s)	136, 741
MvnI	CGCG	1 cut(s)	55
MwoI	GCNNNNNNNGC	5 cut(s)	107, 212, 356, 368, 584
NciI	CCSGG	1 cut(s)	326
NdeI	CATATG	1 cut(s)	251
NdeII	GATC	3 cut(s)	3, 580, 963
NlaIII	CATG	5 cut(s)	119, 287, 425, 786, 1021
NlaIV	GGNNCC	1 cut(s)	1029
NmuCI	GTSAC	1 cut(s)	417
NsiI	ATGCAT	1 cut(s)	251
PagI	TCATGA	1 cut(s)	1017
PfeI	GAWTC	1 cut(s)	597
PkrI	GCNGC	6 cut(s)	361, 406, 550, 589, 592, 1097
PleI	GAGTC	1 cut(s)	877
PpsI	GAGTC	1 cut(s)	877
PsiI	TTATAA	1 cut(s)	191
Psp6I	CCWGG	2 cut(s)	134, 739
PspGI	CCWGG	2 cut(s)	134, 739
PspN4I	GGNNCC	1 cut(s)	1029
PspPI	GGNCC	3 cut(s)	230, 880, 1046
RsaI	GTAC	4 cut(s)	533, 812, 926, 944
RsaNI	GTAC	4 cut(s)	532, 811, 925, 943
RseI	CAYNNNNRTG	1 cut(s)	1022
SaqAI	TTAA	2 cut(s)	149, 989
SatI	GCNGC	6 cut(s)	360, 405, 549, 588, 591, 1096
Sau3AI	GATC	3 cut(s)	3, 580, 963
Sau96I	GGNCC	3 cut(s)	230, 880, 1046
ScaI	AGTACT	1 cut(s)	533
SchI	GAGTC	1 cut(s)	878
ScrFI	CCNGG	3 cut(s)	136, 326, 741
SduI	GDGCHC	1 cut(s)	662
SfaNI	GCATC	5 cut(s)	174, 268, 371, 622, 778
SfcI	CTRYAG	1 cut(s)	522
SinI	GGWCC	2 cut(s)	230, 1046
SmiMI	CAYNNNNRTG	1 cut(s)	1022
SmlI	CTYRAG	1 cut(s)	385
SmoI	CTYRAG	1 cut(s)	385
Sse9I	AATT	8 cut(s)	145, 150, 192, 225, 329, 459, 501, 1134
SsiI	CCGC	8 cut(s)	55, 142, 215, 219, 538, 576, 791, 1095
SspI	AATATT	1 cut(s)	672
SspMI	CTAG	1 cut(s)	107
StyD4I	CCNGG	3 cut(s)	134, 324, 739
StyI	CCWWGG	2 cut(s)	952, 1062
TaaI	ACNGT	3 cut(s)	571, 1009, 1024
TaiI	ACGT	1 cut(s)	907
TaqI	TCGA	1 cut(s)	652
TasI	AATT	8 cut(s)	145, 150, 192, 225, 329, 459, 501, 1134
TatI	WGTACW	2 cut(s)	531, 810
TauI	GCSGC	1 cut(s)	1098
TfiI	GAWTC	1 cut(s)	597
Tru1I	TTAA	2 cut(s)	149, 989
Tru9I	TTAA	2 cut(s)	149, 989
TscAI	CASTG	1 cut(s)	1029
TseFI	GTSAC	1 cut(s)	417
TseI	GCWGC	5 cut(s)	359, 404, 548, 587, 590
Tsp45I	GTSAC	1 cut(s)	417
TspDTI	ATGAA	4 cut(s)	132, 322, 460, 736
TspGWI	ACGGA	1 cut(s)	1059
TspRI	CASTG	1 cut(s)	1029
VpaK11BI	GGWCC	2 cut(s)	230, 1046
XapI	RAATTY	2 cut(s)	145, 329
XcmI	CCANNNNNNNNNTGG	1 cut(s)	290
XspI	CTAG	1 cut(s)	107
ZrmI	AGTACT	1 cut(s)	533
Zsp2I	ATGCAT	1 cut(s)	251

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.