Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0003373

Physical Location & Seq

Genomic Coordinates Reverse (-)

4657628 .. 4659556

Gene Structure 1929 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031385

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGTGTCTTCAGTTTGTCGAGGAACTTGCCCCTGTAAGGAATGCTCTTCAAATCAACCTAAAGATGCTGAAAGATTATGTGGGGGTTAAAAATAAAGTTGAAATTATATTACAGTTTCATTACCTCGTCTGTATGCTTCTCCCCGTGCTGAAACAAATCAACCAAGATCAGAAGGTTGAGCTGGAAGCAGAGGCAAAAATGAGAGGGAAAAAGCTCTCCGAAGTTTATATCAAGCAGGCTGAATTTAGCTGCAGTGAACAAAACAGCCGCAATAAATGCAAAGCTTCCATTGTGGATCTTCATAGAAGCTGCCAAAATTGTTCCTATAACCTTTGTTTGAGCTGTTGTCGAGATCAATTGCAGGGGACTTTCCGGGGAGGTCATCCTGTTATAGTCCGAGATGTCCTTCGGACTACGTCAGATTTGAGTTGGGATCCAGTATTCATGTTCTGCACTTATCTTGAGAGGAGCATTTCTAGATATGAAAATAACAAAAATGCACTGGAAGCTATCCGCTGCTTGGATTGGTGTGAGGTGGAAATGGGGATCAGGCAGTATTTTATGGAACAGTTTCCAGCTCATTATGCTGAAATCATCCAAGCTCTACCACTTCAAGAGTACATGAATCCCACGTCTGGTCTTTTAAATGTTGCTGGTCCATGTGTTTATATTTCGTACGGCTGCAGTGAACAGTTTGTACAGGCTGATTCAGTGATAAAGTTGTGTCATGGCTCGTATGATGTGGCACGACACTGTTGTCCAAGAACAGTGACTGCAGTTCTTGCATCTCGATCATCTGAAGCTATAGAATCAATCTGCCACCTCATCAGACCAACTTCACCCAGCATTAATCCAACTTCCTTGTATTTCTTTCTAGTTCAAATTTTCAAGCATTTTGAAGAACTACTGTCGAAAGTCTCTGAAAGAGAAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000785 GO:0000976 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006325 GO:0006355 GO:0006464 GO:0006482 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008214 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0016569 GO:0016570 GO:0016577 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031326 GO:0031490 GO:0031974 GO:0031981 GO:0032451 GO:0032452 GO:0032454 GO:0033169 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070076 GO:0070988 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:0140096 GO:1901363 GO:1901564 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04714 map04714

Pfam Domains

Protein Families

JmjC WRC

Protein Analysis

312

Amino Acids

35.68

Weight (kDa)

7.03

Isoelectric Point (pI)

56.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003373)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21430
fragaria_vesca	FvH4_3g03760 FvH4_3g03760 FvH4_3g03760 FvH4_3g03760 FvH4_3g03760 FvH4_3g03760
malus_domestica	MD05G1326700.v1.1 MD10G1304800.v1.1
prunus_persica	Prupe.4G034800_v2.0.a1 Prupe.4G034800_v2.0.a1 Prupe.4G034800_v2.0.a1 Prupe.4G034800_v2.0.a1 Prupe.4G034800_v2.0.a1 Prupe.4G034800_v2.0.a1 Prupe.4G034800_v2.0.a1
pyrus_communis	pycom05g30110 pycom10g25720
rosa_chinensis	RchiOBHm_Chr5g0005871
rosa_laevigata	RLG00000016376 RLG00000031332 RLG00000031334 RLG00000031337 RLG00000031345 RLG00000031346 RLG00000031385
rosa_multiflora	Rmu_sc0002694.1_g000004
rosa_roxburghii	Rroxscaffold_1G00070030
rosa_rugosa	Rorug04G0418700 Rorug04G0418800 Rorug04G0418900
rosa_samantha	Rh5AG046200 Rh5BG044900 Rh5CG053800 Rh5DG044700
rosa_wichuraiana	Rw5G004640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	756
AciI	CCGC	2 cut(s)	268, 514
AclWI	GGATC	4 cut(s)	303, 428, 441, 554
AcsI	RAATTY	2 cut(s)	242, 882
AcuI	CTGAAG	1 cut(s)	819
AfaI	GTAC	3 cut(s)	620, 677, 699
AfiI	CCNNNNNNNGG	3 cut(s)	36, 520, 635
AgsI	TTSAA	6 cut(s)	50, 101, 614, 881, 889, 899
AjiI	CACGTC	1 cut(s)	633
Alw26I	GTCTC	1 cut(s)	922
AlwI	GGATC	4 cut(s)	303, 428, 441, 554
AlwNI	CAGNNNCTG	1 cut(s)	773
ApeKI	GCWGC	4 cut(s)	249, 309, 516, 681
ApoI	RAATTY	2 cut(s)	242, 882
AseI	ATTAAT	1 cut(s)	849
Asp700I	GAANNNNTTC	1 cut(s)	570
AspS9I	GGNCC	1 cut(s)	656
AsuC2I	CCSGG	1 cut(s)	374
AsuHPI	GGTGA	1 cut(s)	831
AvaII	GGWCC	1 cut(s)	656
BamHI	GGATCC	1 cut(s)	433
BbvI	GCAGC	4 cut(s)	236, 296, 503, 668
BceAI	ACGGC	1 cut(s)	694
BcgI	CGANNNNNNTGC	2 cut(s)	8, 42
BcnI	CCSGG	1 cut(s)	374
BcoDI	GTCTC	1 cut(s)	922
BfaI	CTAG	2 cut(s)	477, 875
BfmI	CTRYAG	4 cut(s)	250, 682, 774, 804
BisI	GCNGC	5 cut(s)	250, 268, 310, 517, 682
BlsI	GCNGC	5 cut(s)	251, 269, 311, 518, 683
Bme1390I	CCNGG	1 cut(s)	374
Bme18I	GGWCC	1 cut(s)	656
BmgBI	CACGTC	1 cut(s)	633
BmgT120I	GGNCC	1 cut(s)	656
BmiI	GGNNCC	1 cut(s)	435
BmrFI	CCNGG	1 cut(s)	374
BmsI	GCATC	2 cut(s)	54, 794
BpuEI	CTTGAG	1 cut(s)	482
BpuMI	CCSGG	1 cut(s)	374
BsaJI	CCNNGG	1 cut(s)	373
Bsc4I	CCNNNNNNNGG	3 cut(s)	36, 520, 635
Bse1I	ACTGG	2 cut(s)	437, 507
BseDI	CCNNGG	1 cut(s)	373
BseGI	GGATG	2 cut(s)	382, 594
BseLI	CCNNNNNNNGG	3 cut(s)	36, 520, 635
BseNI	ACTGG	2 cut(s)	437, 507
BseRI	GAGGAG	1 cut(s)	481
BseXI	GCAGC	4 cut(s)	236, 296, 503, 668
BseYI	CCCAGC	1 cut(s)	842
BsgI	GTGCAG	1 cut(s)	436
BsiSI	CCGG	1 cut(s)	373
BsiWI	CGTACG	1 cut(s)	675
BslFI	GGGAC	1 cut(s)	379
BslI	CCNNNNNNNGG	3 cut(s)	36, 520, 635
BsmAI	GTCTC	1 cut(s)	922
BsmFI	GGGAC	1 cut(s)	379
BsmI	GAATGC	1 cut(s)	46
Bsp1407I	TGTACA	1 cut(s)	697
Bsp143I	GATC	6 cut(s)	166, 295, 352, 433, 546, 791
BspACI	CCGC	2 cut(s)	268, 514
BspLI	GGNNCC	1 cut(s)	435
BspMAI	CTGCAG	3 cut(s)	254, 686, 778
BspPI	GGATC	4 cut(s)	303, 428, 441, 554
BspQI	GCTCTTC	1 cut(s)	51
BsrGI	TGTACA	1 cut(s)	697
BsrI	ACTGG	2 cut(s)	437, 507
BssECI	CCNNGG	1 cut(s)	373
BssMI	GATC	6 cut(s)	166, 295, 352, 433, 546, 791
Bst4CI	ACNGT	6 cut(s)	114, 570, 693, 755, 769, 909
Bst6I	CTCTTC	1 cut(s)	51
BstAPI	GCANNNNNTGC	2 cut(s)	276, 782
BstAUI	TGTACA	1 cut(s)	697
BstC8I	GCNNGC	1 cut(s)	237
BstF5I	GGATG	2 cut(s)	382, 594
BstKTI	GATC	6 cut(s)	169, 298, 355, 436, 549, 794
BstMAI	GTCTC	1 cut(s)	922
BstMBI	GATC	6 cut(s)	166, 295, 352, 433, 546, 791
BstMWI	GCNNNNNNNGC	4 cut(s)	276, 506, 584, 782
BstSCI	CCNGG	1 cut(s)	372
BstSFI	CTRYAG	4 cut(s)	250, 682, 774, 804
BstV1I	GCAGC	4 cut(s)	236, 296, 503, 668
BstX2I	RGATCY	2 cut(s)	295, 433
BstYI	RGATCY	2 cut(s)	295, 433
BtrI	CACGTC	1 cut(s)	633
BtsCI	GGATG	2 cut(s)	382, 594
BtsI	GCAGTG	2 cut(s)	259, 691
BtsIMutI	CAGTG	6 cut(s)	259, 500, 691, 717, 751, 774
Cac8I	GCNNGC	1 cut(s)	237
CaiI	CAGNNNCTG	1 cut(s)	773
Cfr13I	GGNCC	1 cut(s)	656
Csp6I	GTAC	3 cut(s)	619, 676, 698
CviAII	CATG	4 cut(s)	445, 622, 660, 728
CviQI	GTAC	3 cut(s)	619, 676, 698
DpnI	GATC	6 cut(s)	168, 297, 354, 435, 548, 793
DpnII	GATC	6 cut(s)	166, 295, 352, 433, 546, 791
DraI	TTTAAA	1 cut(s)	645
DrdI	GACNNNNNNGTC	1 cut(s)	756
DseDI	GACNNNNNNGTC	1 cut(s)	756
Eam1104I	CTCTTC	1 cut(s)	51
EarI	CTCTTC	1 cut(s)	51
Eco47I	GGWCC	1 cut(s)	656
Eco57I	CTGAAG	1 cut(s)	819
FaeI	CATG	4 cut(s)	448, 625, 663, 731
FaqI	GGGAC	1 cut(s)	379
FatI	CATG	4 cut(s)	444, 621, 659, 727
Fnu4HI	GCNGC	5 cut(s)	250, 268, 310, 517, 682
FokI	GGATG	2 cut(s)	369, 581
Fsp4HI	GCNGC	5 cut(s)	250, 268, 310, 517, 682
FspBI	CTAG	2 cut(s)	477, 875
GluI	GCNGC	5 cut(s)	250, 268, 310, 517, 682
GsaI	CCCAGC	1 cut(s)	846
HapII	CCGG	1 cut(s)	373
Hin1II	CATG	4 cut(s)	448, 625, 663, 731
HindIII	AAGCTT	1 cut(s)	282
HinfI	GANTC	3 cut(s)	625, 707, 809
HpaII	CCGG	1 cut(s)	373
HphI	GGTGA	1 cut(s)	831
Hpy166II	GTNNAC	2 cut(s)	257, 689
Hpy188I	TCNGA	8 cut(s)	171, 220, 398, 411, 421, 799, 830, 922
Hpy188III	TCNNGA	5 cut(s)	350, 461, 477, 614, 789
Hpy8I	GTNNAC	2 cut(s)	257, 689
HpyAV	CCTTC	2 cut(s)	166, 416
HpyCH4III	ACNGT	6 cut(s)	114, 570, 693, 755, 769, 909
HpyCH4IV	ACGT	2 cut(s)	416, 632
HpyCH4V	TGCA	8 cut(s)	252, 279, 361, 453, 500, 684, 776, 785
HpyF10VI	GCNNNNNNNGC	4 cut(s)	276, 506, 584, 782
HpySE526I	ACGT	2 cut(s)	416, 632
Hsp92II	CATG	4 cut(s)	448, 625, 663, 731
Kzo9I	GATC	6 cut(s)	166, 295, 352, 433, 546, 791
LguI	GCTCTTC	1 cut(s)	51
LmnI	GCTCC	1 cut(s)	468
Lsp1109I	GCAGC	4 cut(s)	236, 296, 503, 668
LweI	GCATC	2 cut(s)	54, 794
MaeI	CTAG	2 cut(s)	477, 875
MaeII	ACGT	2 cut(s)	416, 632
MaeIII	GTNAC	1 cut(s)	769
MalI	GATC	6 cut(s)	168, 297, 354, 435, 548, 793
MboI	GATC	6 cut(s)	166, 295, 352, 433, 546, 791
MboII	GAAGA	3 cut(s)	38, 290, 911
MfeI	CAATTG	1 cut(s)	356
MflI	RGATCY	2 cut(s)	295, 433
MluCI	AATT	5 cut(s)	102, 242, 316, 356, 882
MmeI	TCCRAC	1 cut(s)	878
MnlI	CCTC	8 cut(s)	13, 134, 184, 197, 371, 459, 526, 833
MroXI	GAANNNNTTC	1 cut(s)	570
MseI	TTAA	3 cut(s)	87, 644, 849
MspA1I	CMGCKG	1 cut(s)	516
MspI	CCGG	1 cut(s)	373
MspR9I	CCNGG	1 cut(s)	374
MunI	CAATTG	1 cut(s)	356
Mva1269I	GAATGC	1 cut(s)	46
MwoI	GCNNNNNNNGC	4 cut(s)	276, 506, 584, 782
NciI	CCSGG	1 cut(s)	374
NdeII	GATC	6 cut(s)	166, 295, 352, 433, 546, 791
NlaIII	CATG	4 cut(s)	448, 625, 663, 731
NlaIV	GGNNCC	1 cut(s)	435
NmuCI	GTSAC	1 cut(s)	769
PciSI	GCTCTTC	1 cut(s)	51
PctI	GAATGC	1 cut(s)	46
PdmI	GAANNNNTTC	1 cut(s)	570
PfeI	GAWTC	3 cut(s)	625, 707, 809
Pfl23II	CGTACG	1 cut(s)	675
PflFI	GACNNNGTC	1 cut(s)	415
PkrI	GCNGC	5 cut(s)	251, 269, 311, 518, 683
PshBI	ATTAAT	1 cut(s)	849
PspFI	CCCAGC	1 cut(s)	842
PspLI	CGTACG	1 cut(s)	675
PspN4I	GGNNCC	1 cut(s)	435
PspPI	GGNCC	1 cut(s)	656
PsrI	GAACNNNNNNTAC	2 cut(s)	681, 713
PstI	CTGCAG	3 cut(s)	254, 686, 778
PstNI	CAGNNNCTG	1 cut(s)	773
PsuI	RGATCY	2 cut(s)	295, 433
PsyI	GACNNNGTC	1 cut(s)	415
RsaI	GTAC	3 cut(s)	620, 677, 699
RsaNI	GTAC	3 cut(s)	619, 676, 698
SapI	GCTCTTC	1 cut(s)	51
SaqAI	TTAA	3 cut(s)	87, 644, 849
SatI	GCNGC	5 cut(s)	250, 268, 310, 517, 682
Sau3AI	GATC	6 cut(s)	166, 295, 352, 433, 546, 791
Sau96I	GGNCC	1 cut(s)	656
ScrFI	CCNGG	1 cut(s)	374
SfaNI	GCATC	2 cut(s)	54, 794
SfcI	CTRYAG	4 cut(s)	250, 682, 774, 804
SinI	GGWCC	1 cut(s)	656
SmlI	CTYRAG	1 cut(s)	461
SmoI	CTYRAG	1 cut(s)	461
Sse9I	AATT	5 cut(s)	102, 242, 316, 356, 882
SsiI	CCGC	2 cut(s)	268, 514
SspMI	CTAG	2 cut(s)	477, 875
StyD4I	CCNGG	1 cut(s)	372
TaaI	ACNGT	6 cut(s)	114, 570, 693, 755, 769, 909
TaiI	ACGT	2 cut(s)	419, 635
TaqI	TCGA	4 cut(s)	18, 349, 790, 911
TasI	AATT	5 cut(s)	102, 242, 316, 356, 882
TatI	WGTACW	2 cut(s)	618, 697
TauI	GCSGC	1 cut(s)	270
TfiI	GAWTC	3 cut(s)	625, 707, 809
Tru1I	TTAA	3 cut(s)	87, 644, 849
Tru9I	TTAA	3 cut(s)	87, 644, 849
TscAI	CASTG	6 cut(s)	259, 507, 691, 717, 758, 774
TseFI	GTSAC	1 cut(s)	769
TseI	GCWGC	4 cut(s)	249, 309, 516, 681
Tsp45I	GTSAC	1 cut(s)	769
TspDTI	ATGAA	5 cut(s)	107, 290, 433, 498, 638
TspRI	CASTG	6 cut(s)	259, 507, 691, 717, 758, 774
Tth111I	GACNNNGTC	1 cut(s)	415
VpaK11BI	GGWCC	1 cut(s)	656
VspI	ATTAAT	1 cut(s)	849
XapI	RAATTY	2 cut(s)	242, 882
XbaI	TCTAGA	1 cut(s)	476
XmnI	GAANNNNTTC	1 cut(s)	570
XspI	CTAG	2 cut(s)	477, 875

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.