Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0003373

Physical Location & Seq

Genomic Coordinates Forward (+)

57943551 .. 57944710

Gene Structure 1160 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0418800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGACGCATATAGTGTTAAATGACTACTTTTCTTGTAGTGTTGACAGTAGATGGTTTTGCTATAGATCATTCCATATCGGCTATGCAGATTTCGTAGAGATTTTCTCTGTGGACGCAACCCCATTTGTAGATGAGTACTTCACGGATCCAAAGGGGCATGTCTATGACTGGAGAGGTGTGCTTCCTCGGGAGGATTACCTTTCAAATGTCTTGAAGGGTCTGGATCATGCACTGAAAAATTCCTCTGCAAAATGGAAAATTGCGATCGGTCACCATACAATTAGAAGTGCAGGACATCATGGTAACACCGCTGAGCTTGTAACCAAACTTCTCCCAATCCTTAAGGCAAACAATATAGATTTTTATATAAACGGACATGACCATTGCTTGCAGCACATCAGTGATAATGACAGTAAAATTGAGTTTTTTACCAGTGGAGGTGGCTCCAAGGCTTGGAGAGGTGATATAAAGCCCTGGGATCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000785 GO:0000976 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006325 GO:0006355 GO:0006464 GO:0006482 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008214 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0016569 GO:0016570 GO:0016577 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031326 GO:0031490 GO:0031974 GO:0031981 GO:0032451 GO:0032452 GO:0032454 GO:0033169 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070076 GO:0070988 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:0140096 GO:1901363 GO:1901564 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04714 map04714

Pfam Domains

Protein Families

JmjC WRC

Protein Analysis

161

Amino Acids

18.44

Weight (kDa)

6.39

Isoelectric Point (pI)

38.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Metallophos	PF00149	25 - 129	2.2e-07	Calcineurin-like phosphoesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003373)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21430
fragaria_vesca	FvH4_3g03760 FvH4_3g03760 FvH4_3g03760 FvH4_3g03760 FvH4_3g03760 FvH4_3g03760
malus_domestica	MD05G1326700.v1.1 MD10G1304800.v1.1
prunus_persica	Prupe.4G034800_v2.0.a1 Prupe.4G034800_v2.0.a1 Prupe.4G034800_v2.0.a1 Prupe.4G034800_v2.0.a1 Prupe.4G034800_v2.0.a1 Prupe.4G034800_v2.0.a1 Prupe.4G034800_v2.0.a1
pyrus_communis	pycom05g30110 pycom10g25720
rosa_chinensis	RchiOBHm_Chr5g0005871
rosa_laevigata	RLG00000016376 RLG00000031332 RLG00000031334 RLG00000031337 RLG00000031345 RLG00000031346 RLG00000031385
rosa_multiflora	Rmu_sc0002694.1_g000004
rosa_roxburghii	Rroxscaffold_1G00070030
rosa_rugosa	Rorug04G0418700 Rorug04G0418800 Rorug04G0418900
rosa_samantha	Rh5AG046200 Rh5BG044900 Rh5CG053800 Rh5DG044700
rosa_wichuraiana	Rw5G004640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	453
AciI	CCGC	1 cut(s)	309
AclWI	GGATC	3 cut(s)	140, 153, 231
AcsI	RAATTY	1 cut(s)	238
AfaI	GTAC	1 cut(s)	137
AfiI	CCNNNNNNNGG	1 cut(s)	453
AflII	CTTAAG	1 cut(s)	341
AgsI	TTSAA	2 cut(s)	204, 214
AjnI	CCWGG	1 cut(s)	473
AleI	CACNNNNGTG	1 cut(s)	399
AluBI	AGCT	1 cut(s)	316
AluI	AGCT	1 cut(s)	316
AlwI	GGATC	3 cut(s)	140, 153, 231
Ama87I	CYCGRG	1 cut(s)	186
ApeKI	GCWGC	1 cut(s)	391
ApoI	RAATTY	1 cut(s)	238
AsuHPI	GGTGA	2 cut(s)	263, 473
AvaI	CYCGRG	1 cut(s)	186
BamHI	GGATCC	1 cut(s)	145
BarI	GAAGNNNNNNTAC	2 cut(s)	312, 344
BbvI	GCAGC	1 cut(s)	403
BccI	CCATC	1 cut(s)	45
BciT130I	CCWGG	1 cut(s)	475
BfmI	CTRYAG	1 cut(s)	61
BfrI	CTTAAG	1 cut(s)	341
BisI	GCNGC	1 cut(s)	392
BlpI	GCTNAGC	1 cut(s)	312
BlsI	GCNGC	1 cut(s)	393
BmcAI	AGTACT	1 cut(s)	137
Bme1390I	CCNGG	1 cut(s)	475
BmeT110I	CYCGRG	1 cut(s)	186
BmiI	GGNNCC	2 cut(s)	147, 445
BmrFI	CCNGG	1 cut(s)	475
BplI	GAGNNNNNCTC	2 cut(s)	89, 121
BpmI	CTGGAG	1 cut(s)	190
Bpu1102I	GCTNAGC	1 cut(s)	312
Bsa29I	ATCGAT	1 cut(s)	481
BsaJI	CCNNGG	4 cut(s)	185, 447, 473, 474
Bsc4I	CCNNNNNNNGG	1 cut(s)	453
Bse1I	ACTGG	2 cut(s)	173, 432
Bse3DI	GCAATG	1 cut(s)	382
BseBI	CCWGG	1 cut(s)	475
BseCI	ATCGAT	1 cut(s)	481
BseDI	CCNNGG	4 cut(s)	185, 447, 473, 474
BseLI	CCNNNNNNNGG	1 cut(s)	453
BseMI	GCAATG	1 cut(s)	382
BseMII	CTCAG	1 cut(s)	303
BseNI	ACTGG	2 cut(s)	173, 432
BseXI	GCAGC	1 cut(s)	403
BsgI	GTGCAG	1 cut(s)	309
Bsh1285I	CGRYCG	1 cut(s)	267
BshVI	ATCGAT	1 cut(s)	481
BsiEI	CGRYCG	1 cut(s)	267
BsiHKCI	CYCGRG	1 cut(s)	186
BslI	CCNNNNNNNGG	1 cut(s)	453
BsoBI	CYCGRG	1 cut(s)	186
Bsp143I	GATC	5 cut(s)	65, 145, 223, 264, 478
Bsp1720I	GCTNAGC	1 cut(s)	312
BspACI	CCGC	1 cut(s)	309
BspCNI	CTCAG	1 cut(s)	304
BspDI	ATCGAT	1 cut(s)	481
BspLI	GGNNCC	2 cut(s)	147, 445
BspPI	GGATC	3 cut(s)	140, 153, 231
BspTI	CTTAAG	1 cut(s)	341
BsrDI	GCAATG	1 cut(s)	382
BsrI	ACTGG	2 cut(s)	173, 432
BssECI	CCNNGG	4 cut(s)	185, 447, 473, 474
BssMI	GATC	5 cut(s)	65, 145, 223, 264, 478
BssT1I	CCWWGG	1 cut(s)	447
Bst2UI	CCWGG	1 cut(s)	475
Bst4CI	ACNGT	2 cut(s)	47, 413
BstAFI	CTTAAG	1 cut(s)	341
BstC8I	GCNNGC	1 cut(s)	389
BstDEI	CTNAG	1 cut(s)	312
BstEII	GGTNACC	1 cut(s)	269
BstKTI	GATC	5 cut(s)	68, 148, 226, 267, 481
BstMBI	GATC	5 cut(s)	65, 145, 223, 264, 478
BstMCI	CGRYCG	1 cut(s)	267
BstNI	CCWGG	1 cut(s)	475
BstNSI	RCATGY	1 cut(s)	161
BstPI	GGTNACC	1 cut(s)	269
BstSCI	CCNGG	1 cut(s)	473
BstSFI	CTRYAG	1 cut(s)	61
BstV1I	GCAGC	1 cut(s)	403
BstX2I	RGATCY	1 cut(s)	145
BstYI	RGATCY	1 cut(s)	145
Bsu15I	ATCGAT	1 cut(s)	481
BsuTUI	ATCGAT	1 cut(s)	481
BtsIMutI	CAGTG	3 cut(s)	230, 406, 439
Cac8I	GCNNGC	1 cut(s)	389
ClaI	ATCGAT	1 cut(s)	481
CseI	GACGC	2 cut(s)	13, 122
Csp6I	GTAC	1 cut(s)	136
CviAII	CATG	4 cut(s)	158, 227, 299, 377
CviJI	RGCY	5 cut(s)	81, 316, 444, 452, 472
CviKI_1	RGCY	5 cut(s)	81, 316, 444, 452, 472
CviQI	GTAC	1 cut(s)	136
DdeI	CTNAG	1 cut(s)	312
DpnI	GATC	5 cut(s)	67, 147, 225, 266, 480
DpnII	GATC	5 cut(s)	65, 145, 223, 264, 478
Eco130I	CCWWGG	1 cut(s)	447
Eco88I	CYCGRG	1 cut(s)	186
Eco91I	GGTNACC	1 cut(s)	269
EcoO65I	GGTNACC	1 cut(s)	269
EcoRII	CCWGG	1 cut(s)	473
EcoT14I	CCWWGG	1 cut(s)	447
ErhI	CCWWGG	1 cut(s)	447
FaeI	CATG	4 cut(s)	161, 230, 302, 380
FatI	CATG	4 cut(s)	157, 226, 298, 376
Fnu4HI	GCNGC	1 cut(s)	392
Fsp4HI	GCNGC	1 cut(s)	392
GluI	GCNGC	1 cut(s)	392
GsuI	CTGGAG	1 cut(s)	190
HgaI	GACGC	2 cut(s)	13, 122
Hin1II	CATG	4 cut(s)	161, 230, 302, 380
HincII	GTYRAC	1 cut(s)	43
HindII	GTYRAC	1 cut(s)	43
HphI	GGTGA	2 cut(s)	263, 473
Hpy166II	GTNNAC	2 cut(s)	43, 112
Hpy188III	TCNNGA	3 cut(s)	188, 211, 221
Hpy8I	GTNNAC	2 cut(s)	43, 112
HpyAV	CCTTC	1 cut(s)	208
HpyCH4III	ACNGT	2 cut(s)	47, 413
HpyCH4V	TGCA	5 cut(s)	86, 230, 248, 290, 391
HpyF3I	CTNAG	1 cut(s)	312
Hsp92II	CATG	4 cut(s)	161, 230, 302, 380
Kzo9I	GATC	5 cut(s)	65, 145, 223, 264, 478
LmnI	GCTCC	1 cut(s)	449
LpnPI	CCDG	5 cut(s)	154, 206, 276, 445, 460
Lsp1109I	GCAGC	1 cut(s)	403
MaeIII	GTNAC	3 cut(s)	269, 302, 319
MalI	GATC	5 cut(s)	67, 147, 225, 266, 480
MboI	GATC	5 cut(s)	65, 145, 223, 264, 478
MflI	RGATCY	1 cut(s)	145
MluCI	AATT	4 cut(s)	238, 258, 279, 417
MnlI	CCTC	6 cut(s)	167, 184, 195, 253, 431, 452
MseI	TTAA	2 cut(s)	17, 342
MslI	CAYNNNNRTG	2 cut(s)	162, 399
MspA1I	CMGCKG	1 cut(s)	311
MspCI	CTTAAG	1 cut(s)	341
MspR9I	CCNGG	1 cut(s)	475
MvaI	CCWGG	1 cut(s)	475
NdeII	GATC	5 cut(s)	65, 145, 223, 264, 478
NlaIII	CATG	4 cut(s)	161, 230, 302, 380
NlaIV	GGNNCC	2 cut(s)	147, 445
NmuCI	GTSAC	1 cut(s)	269
NspI	RCATGY	1 cut(s)	161
OliI	CACNNNNGTG	1 cut(s)	399
PasI	CCCWGGG	1 cut(s)	474
PflMI	CCANNNNNTGG	1 cut(s)	453
PkrI	GCNGC	1 cut(s)	393
Ple19I	CGATCG	1 cut(s)	267
Psp6I	CCWGG	1 cut(s)	473
PspEI	GGTNACC	1 cut(s)	269
PspGI	CCWGG	1 cut(s)	473
PspN4I	GGNNCC	2 cut(s)	147, 445
PsuI	RGATCY	1 cut(s)	145
PvuI	CGATCG	1 cut(s)	267
RsaI	GTAC	1 cut(s)	137
RsaNI	GTAC	1 cut(s)	136
RseI	CAYNNNNRTG	2 cut(s)	162, 399
SaqAI	TTAA	2 cut(s)	17, 342
SatI	GCNGC	1 cut(s)	392
Sau3AI	GATC	5 cut(s)	65, 145, 223, 264, 478
ScaI	AGTACT	1 cut(s)	137
ScrFI	CCNGG	1 cut(s)	475
SetI	ASST	5 cut(s)	178, 201, 318, 442, 463
SfcI	CTRYAG	1 cut(s)	61
SmiMI	CAYNNNNRTG	2 cut(s)	162, 399
SmlI	CTYRAG	1 cut(s)	341
SmoI	CTYRAG	1 cut(s)	341
Sse9I	AATT	4 cut(s)	238, 258, 279, 417
SsiI	CCGC	1 cut(s)	309
StyD4I	CCNGG	1 cut(s)	473
StyI	CCWWGG	1 cut(s)	447
TaaI	ACNGT	2 cut(s)	47, 413
TaqI	TCGA	1 cut(s)	481
TaqII	GACCGA	1 cut(s)	257
TasI	AATT	4 cut(s)	238, 258, 279, 417
TatI	WGTACW	1 cut(s)	135
Tru1I	TTAA	2 cut(s)	17, 342
Tru9I	TTAA	2 cut(s)	17, 342
TscAI	CASTG	3 cut(s)	237, 406, 439
TseFI	GTSAC	1 cut(s)	269
TseI	GCWGC	1 cut(s)	391
Tsp45I	GTSAC	1 cut(s)	269
TspGWI	ACGGA	2 cut(s)	158, 387
TspRI	CASTG	3 cut(s)	237, 406, 439
Van91I	CCANNNNNTGG	1 cut(s)	453
Vha464I	CTTAAG	1 cut(s)	341
XapI	RAATTY	1 cut(s)	238
XceI	RCATGY	1 cut(s)	161
ZrmI	AGTACT	1 cut(s)	137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.