Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0005021

Physical Location & Seq

Genomic Coordinates Forward (+)

22145734 .. 22147993

Gene Structure 2260 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1092200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGAATTTGGCTATCACTGTGGCAGTGTCTTGTTCTTCATCATGTTCTGTGGATGGAGCTGATGATCTTCATTCTGGTTCGTCGAGGTTGATTCTTGTGTTAAAGCCTAAGCTGGAAAATGCTGACTGGTCTATCACGGCTGGTGTAGTTTGGGTTTTATGTGATATAAGGAAATATTTGAAGTCAGAAGACGATGATGAACTTGTTGAGGTATTCTTTGATTCTATCAATTCCGTTCTTTCAACTGTGCCTTGGAATTTACTAGATGAGATTCATGTTGGTGCAAAGCCTGATGCTCAGAAAGGGTCCAGAGCAGATGCTTTGTTTCAAAGATCCTTGTTTCTAGGAAATTTGATTCAGTTTCTCCGTTCCATGGTTGAGCAAAGTGGTTCTGCGAAAGCTTCAGGTGGATCTACAGACAAACATCACCCAGTTTTTTCTACATTCATCACCCTTGTTCCGCAGCTTTTATGTTGGTGCCTTGGTGAGCAAGCACATTGCAGTAATTTCAACAAGTGCATCTCTCAATACTTTAGACACAAGTTATTGGTATTACATGGTGCAAACCTACAGATGCTTATGATCAGGCTCATTTTCCAAACCTACCCTCAGCAGTCGGTTCTTGTTTCATGGTTGCAACTTGTCCATGATTACTTTGGAGAGCTTCTGAGGCAACCCATTACTCCTCTAGAATATCAGGATGATTGCCTAGAAGGGTCTCCATTTCTATCCAATGTTTCTGATGCAGAAGTAAACAGTCTGTCTTCCCGCCATCTGCAAAGACAGGCTATTTTCCTCTTTCTGAGGTGTTCTTTTGGTTTGATTAGCTCAAAAGAAGGAACTAACAACAAATGTGCTTGTGTTATTTGGAACTTACGCTTGATGTGTGACTCAAAAACAGAGCTGGATTGTTGTGGAAGAAAGAAAGGTCTATTGGAGCTTTATATTTCTGCTTCAAGGGCATCTTCCAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LINES_C LINES_N

Protein Analysis

325

Amino Acids

36.13

Weight (kDa)

6.14

Isoelectric Point (pI)

45.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005021)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50430 AT3G50430
fragaria_vesca	FvH4_1g14850
malus_domestica	MD06G1092200.v1.1 MD15G1276100.v1.1
prunus_persica	Prupe.5G239300_v2.0.a1 Prupe.7G141900_v2.0.a1 Prupe.7G141900_v2.0.a1
pyrus_communis	pycom06g08810 pycom15g23900 pycom15g23910
rosa_chinensis	RchiOBHm_Chr1g0329901 RchiOBHm_Chr2g0103811
rosa_laevigata	RLG00000017265 RLG00000029854
rosa_multiflora	Rmu_sc0000112.1_g000009 Rmu_sc0001286.1_g000019
rosa_roxburghii	Rroxscaffold_2G00139340 Rroxscaffold_4G00320520
rosa_rugosa	Rorug01G0084200 Rorug02G0117400
rosa_samantha	Rh1BG081300 Rh1DG105200 Rh2AG166500 Rh2CG172400
rosa_wichuraiana	Rw0G006900 Rw1G008080 Rw1G008130 Rw2G013040 Rw4G001250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	477
AciI	CCGC	2 cut(s)	461, 769
AclWI	GGATC	2 cut(s)	327, 418
AcsI	RAATTY	3 cut(s)	4, 256, 349
AcuI	CTGAAG	1 cut(s)	387
AfiI	CCNNNNNNNGG	1 cut(s)	373
AgsI	TTSAA	5 cut(s)	181, 243, 329, 511, 957
AjuI	GAANNNNNNNTTGG	2 cut(s)	917, 949
AluBI	AGCT	8 cut(s)	59, 112, 401, 466, 664, 828, 904, 940
AluI	AGCT	8 cut(s)	59, 112, 401, 466, 664, 828, 904, 940
Alw26I	GTCTC	1 cut(s)	723
AlwI	GGATC	2 cut(s)	327, 418
ApeKI	GCWGC	1 cut(s)	463
ApoI	RAATTY	3 cut(s)	4, 256, 349
AspS9I	GGNCC	1 cut(s)	306
AsuHPI	GGTGA	3 cut(s)	419, 442, 497
AvaII	GGWCC	1 cut(s)	306
BanI	GGYRCC	1 cut(s)	477
BbsI	GAAGAC	2 cut(s)	195, 756
BbvCI	CCTCAGC	1 cut(s)	609
BbvI	GCAGC	1 cut(s)	475
BccI	CCATC	2 cut(s)	47, 780
BceAI	ACGGC	1 cut(s)	153
BclI	TGATCA	1 cut(s)	582
BcoDI	GTCTC	1 cut(s)	723
BfaI	CTAG	4 cut(s)	263, 344, 689, 710
BfmI	CTRYAG	2 cut(s)	414, 569
BisI	GCNGC	1 cut(s)	464
BlsI	GCNGC	1 cut(s)	465
Bme18I	GGWCC	1 cut(s)	306
BmgT120I	GGNCC	1 cut(s)	306
BmiI	GGNNCC	2 cut(s)	307, 479
BmrI	ACTGGG	1 cut(s)	425
BmsI	GCATC	6 cut(s)	283, 307, 528, 564, 733, 971
BmuI	ACTGGG	1 cut(s)	425
BpiI	GAAGAC	2 cut(s)	195, 756
Bpu10I	CCTNAGC	2 cut(s)	108, 609
BsaI	GGTCTC	1 cut(s)	723
BsaJI	CCNNGG	3 cut(s)	251, 372, 481
Bsc4I	CCNNNNNNNGG	1 cut(s)	373
Bse1I	ACTGG	2 cut(s)	131, 431
Bse3DI	GCAATG	1 cut(s)	496
BseDI	CCNNGG	3 cut(s)	251, 372, 481
BseGI	GGATG	2 cut(s)	58, 706
BseLI	CCNNNNNNNGG	1 cut(s)	373
BseMI	GCAATG	1 cut(s)	496
BseMII	CTCAG	4 cut(s)	311, 623, 659, 794
BseNI	ACTGG	2 cut(s)	131, 431
BseRI	GAGGAG	1 cut(s)	675
BseXI	GCAGC	1 cut(s)	475
BshNI	GGYRCC	1 cut(s)	477
BslI	CCNNNNNNNGG	1 cut(s)	373
BsmAI	GTCTC	1 cut(s)	723
Bso31I	GGTCTC	1 cut(s)	723
Bsp143I	GATC	4 cut(s)	64, 332, 410, 582
Bsp19I	CCATGG	1 cut(s)	372
BspACI	CCGC	2 cut(s)	461, 769
BspCNI	CTCAG	4 cut(s)	310, 622, 660, 795
BspLI	GGNNCC	2 cut(s)	307, 479
BspPI	GGATC	2 cut(s)	327, 418
BspT107I	GGYRCC	1 cut(s)	477
BspTNI	GGTCTC	1 cut(s)	723
BsrDI	GCAATG	1 cut(s)	496
BsrI	ACTGG	2 cut(s)	131, 431
BssECI	CCNNGG	3 cut(s)	251, 372, 481
BssMI	GATC	4 cut(s)	64, 332, 410, 582
BssT1I	CCWWGG	3 cut(s)	251, 372, 481
Bst4CI	ACNGT	3 cut(s)	19, 247, 758
BstC8I	GCNNGC	1 cut(s)	492
BstDEI	CTNAG	5 cut(s)	108, 297, 609, 668, 803
BstDSI	CCRYGG	1 cut(s)	372
BstF5I	GGATG	2 cut(s)	58, 706
BstKTI	GATC	4 cut(s)	67, 335, 413, 585
BstMAI	GTCTC	1 cut(s)	723
BstMBI	GATC	4 cut(s)	64, 332, 410, 582
BstMWI	GCNNNNNNNGC	2 cut(s)	670, 959
BstSFI	CTRYAG	2 cut(s)	414, 569
BstV1I	GCAGC	1 cut(s)	475
BstV2I	GAAGAC	2 cut(s)	195, 756
BstX2I	RGATCY	2 cut(s)	332, 410
BstYI	RGATCY	2 cut(s)	332, 410
BtgI	CCRYGG	1 cut(s)	372
BtsCI	GGATG	2 cut(s)	58, 706
BtsI	GCAGTG	1 cut(s)	30
BtsIMutI	CAGTG	2 cut(s)	15, 30
Cac8I	GCNNGC	1 cut(s)	492
Cfr13I	GGNCC	1 cut(s)	306
CviAII	CATG	6 cut(s)	42, 275, 373, 557, 630, 647
DdeI	CTNAG	5 cut(s)	108, 297, 609, 668, 803
DpnI	GATC	4 cut(s)	66, 334, 412, 584
DpnII	GATC	4 cut(s)	64, 332, 410, 582
Eco130I	CCWWGG	3 cut(s)	251, 372, 481
Eco31I	GGTCTC	1 cut(s)	723
Eco47I	GGWCC	1 cut(s)	306
Eco57I	CTGAAG	1 cut(s)	387
EcoT14I	CCWWGG	3 cut(s)	251, 372, 481
ErhI	CCWWGG	3 cut(s)	251, 372, 481
FaeI	CATG	6 cut(s)	45, 278, 376, 560, 633, 650
FalI	AAGNNNNNCTT	1 cut(s)	949
FatI	CATG	6 cut(s)	41, 274, 372, 556, 629, 646
FauI	CCCGC	1 cut(s)	776
FbaI	TGATCA	1 cut(s)	582
Fnu4HI	GCNGC	1 cut(s)	464
FokI	GGATG	2 cut(s)	65, 713
Fsp4HI	GCNGC	1 cut(s)	464
FspBI	CTAG	4 cut(s)	263, 344, 689, 710
GluI	GCNGC	1 cut(s)	464
Hin1II	CATG	6 cut(s)	45, 278, 376, 560, 633, 650
HindIII	AAGCTT	1 cut(s)	399
HinfI	GANTC	5 cut(s)	91, 221, 271, 355, 890
HphI	GGTGA	3 cut(s)	419, 442, 497
Hpy166II	GTNNAC	1 cut(s)	754
Hpy188I	TCNGA	5 cut(s)	187, 300, 669, 742, 804
Hpy188III	TCNNGA	3 cut(s)	309, 689, 698
Hpy8I	GTNNAC	1 cut(s)	754
Hpy99I	CGWCG	1 cut(s)	85
HpyAV	CCTTC	2 cut(s)	707, 830
HpyCH4III	ACNGT	3 cut(s)	19, 247, 758
HpyCH4V	TGCA	7 cut(s)	284, 501, 519, 563, 637, 746, 778
HpyF10VI	GCNNNNNNNGC	2 cut(s)	670, 959
HpyF3I	CTNAG	5 cut(s)	108, 297, 609, 668, 803
Hsp92II	CATG	6 cut(s)	45, 278, 376, 560, 633, 650
Ksp22I	TGATCA	1 cut(s)	582
Kzo9I	GATC	4 cut(s)	64, 332, 410, 582
LmnI	GCTCC	2 cut(s)	56, 937
Lsp1109I	GCAGC	1 cut(s)	475
LweI	GCATC	6 cut(s)	283, 307, 528, 564, 733, 971
MaeI	CTAG	4 cut(s)	263, 344, 689, 710
MaeIII	GTNAC	1 cut(s)	887
MalI	GATC	4 cut(s)	66, 334, 412, 584
MboI	GATC	4 cut(s)	64, 332, 410, 582
MboII	GAAGA	6 cut(s)	27, 59, 200, 756, 930, 957
MflI	RGATCY	2 cut(s)	332, 410
MluCI	AATT	5 cut(s)	4, 229, 256, 349, 505
MlyI	GAGTC	1 cut(s)	884
MnlI	CCTC	7 cut(s)	78, 202, 618, 663, 696, 798, 806
MseI	TTAA	1 cut(s)	101
MslI	CAYNNNNRTG	1 cut(s)	279
MwoI	GCNNNNNNNGC	2 cut(s)	670, 959
NcoI	CCATGG	1 cut(s)	372
NdeII	GATC	4 cut(s)	64, 332, 410, 582
NlaIII	CATG	6 cut(s)	45, 278, 376, 560, 633, 650
NlaIV	GGNNCC	2 cut(s)	307, 479
NmuCI	GTSAC	1 cut(s)	887
PfeI	GAWTC	4 cut(s)	91, 221, 271, 355
PkrI	GCNGC	1 cut(s)	465
PleI	GAGTC	1 cut(s)	884
PpsI	GAGTC	1 cut(s)	884
PspN4I	GGNNCC	2 cut(s)	307, 479
PspPI	GGNCC	1 cut(s)	306
PsuI	RGATCY	2 cut(s)	332, 410
RseI	CAYNNNNRTG	1 cut(s)	279
SaqAI	TTAA	1 cut(s)	101
SatI	GCNGC	1 cut(s)	464
Sau3AI	GATC	4 cut(s)	64, 332, 410, 582
Sau96I	GGNCC	1 cut(s)	306
SchI	GAGTC	1 cut(s)	884
SfaNI	GCATC	6 cut(s)	283, 307, 528, 564, 733, 971
SfcI	CTRYAG	2 cut(s)	414, 569
SinI	GGWCC	1 cut(s)	306
SmiMI	CAYNNNNRTG	1 cut(s)	279
Sse9I	AATT	5 cut(s)	4, 229, 256, 349, 505
SsiI	CCGC	2 cut(s)	461, 769
SspI	AATATT	1 cut(s)	176
SspMI	CTAG	4 cut(s)	263, 344, 689, 710
StyI	CCWWGG	3 cut(s)	251, 372, 481
TaaI	ACNGT	3 cut(s)	19, 247, 758
TaqI	TCGA	1 cut(s)	83
TasI	AATT	5 cut(s)	4, 229, 256, 349, 505
TfiI	GAWTC	4 cut(s)	91, 221, 271, 355
Tru1I	TTAA	1 cut(s)	101
Tru9I	TTAA	1 cut(s)	101
TscAI	CASTG	2 cut(s)	22, 30
TseFI	GTSAC	1 cut(s)	887
TseI	GCWGC	1 cut(s)	463
Tsp45I	GTSAC	1 cut(s)	887
TspDTI	ATGAA	7 cut(s)	17, 27, 59, 213, 263, 436, 618
TspGWI	ACGGA	2 cut(s)	223, 356
TspRI	CASTG	2 cut(s)	22, 30
VpaK11BI	GGWCC	1 cut(s)	306
XapI	RAATTY	3 cut(s)	4, 256, 349
XbaI	TCTAGA	1 cut(s)	688
XcmI	CCANNNNNNNNNTGG	1 cut(s)	653
XspI	CTAG	4 cut(s)	263, 344, 689, 710

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.