Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0005021

Physical Location & Seq

Genomic Coordinates Reverse (-)

13683322 .. 13687794

Gene Structure 4473 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0084200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 171 bp

ATGTTGATGGTGAAGGAGAGTTCTAATTGGATTGCCACCGGTGGATTTGCCGCTGAGGATTTTGACGGCGAGGACATGTCGATCGATCTCGATACATTCTATCGCCTTCTCGAGGAAGAACCCCCGGTTGTAGGCAAGAGACTCAATCACCTGCAATGTGAATTTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LINES_C LINES_N

Protein Analysis

56

Amino Acids

6.43

Weight (kDa)

4.3

Isoelectric Point (pI)

60.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005021)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50430 AT3G50430
fragaria_vesca	FvH4_1g14850
malus_domestica	MD06G1092200.v1.1 MD15G1276100.v1.1
prunus_persica	Prupe.5G239300_v2.0.a1 Prupe.7G141900_v2.0.a1 Prupe.7G141900_v2.0.a1
pyrus_communis	pycom06g08810 pycom15g23900 pycom15g23910
rosa_chinensis	RchiOBHm_Chr1g0329901 RchiOBHm_Chr2g0103811
rosa_laevigata	RLG00000017265 RLG00000029854
rosa_multiflora	Rmu_sc0000112.1_g000009 Rmu_sc0001286.1_g000019
rosa_roxburghii	Rroxscaffold_2G00139340 Rroxscaffold_4G00320520
rosa_rugosa	Rorug01G0084200 Rorug02G0117400
rosa_samantha	Rh1BG081300 Rh1DG105200 Rh2AG166500 Rh2CG172400
rosa_wichuraiana	Rw0G006900 Rw1G008080 Rw1G008130 Rw2G013040 Rw4G001250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	159
Acc36I	ACCTGC	1 cut(s)	159
AciI	CCGC	1 cut(s)	51
AcsI	RAATTY	1 cut(s)	161
AfiI	CCNNNNNNNGG	2 cut(s)	112, 131
AflIII	ACRYGT	1 cut(s)	75
AgeI	ACCGGT	1 cut(s)	38
Alw26I	GTCTC	1 cut(s)	133
Ama87I	CYCGRG	1 cut(s)	110
ApoI	RAATTY	1 cut(s)	161
AsiGI	ACCGGT	1 cut(s)	38
AsuC2I	CCSGG	1 cut(s)	125
AsuHPI	GGTGA	2 cut(s)	22, 140
AvaI	CYCGRG	1 cut(s)	110
BbvCI	CCTCAGC	1 cut(s)	54
BceAI	ACGGC	1 cut(s)	82
BcnI	CCSGG	1 cut(s)	125
BcoDI	GTCTC	1 cut(s)	133
BfuAI	ACCTGC	1 cut(s)	159
BisI	GCNGC	1 cut(s)	51
BlsI	GCNGC	1 cut(s)	52
Bme1390I	CCNGG	1 cut(s)	125
BmeT110I	CYCGRG	1 cut(s)	110
BmrFI	CCNGG	1 cut(s)	125
Bpu10I	CCTNAGC	1 cut(s)	54
BpuMI	CCSGG	1 cut(s)	125
Bsa29I	ATCGAT	1 cut(s)	84
BsaJI	CCNNGG	1 cut(s)	123
BsaWI	WCCGGW	1 cut(s)	38
Bsc4I	CCNNNNNNNGG	2 cut(s)	112, 131
Bse118I	RCCGGY	1 cut(s)	38
Bse3DI	GCAATG	1 cut(s)	161
BseCI	ATCGAT	1 cut(s)	84
BseDI	CCNNGG	1 cut(s)	123
BseLI	CCNNNNNNNGG	2 cut(s)	112, 131
BseMI	GCAATG	1 cut(s)	161
BseMII	CTCAG	1 cut(s)	45
Bsh1285I	CGRYCG	1 cut(s)	84
BshTI	ACCGGT	1 cut(s)	38
BshVI	ATCGAT	1 cut(s)	84
BsiEI	CGRYCG	1 cut(s)	84
BsiHKCI	CYCGRG	1 cut(s)	110
BsiSI	CCGG	2 cut(s)	39, 125
BslI	CCNNNNNNNGG	2 cut(s)	112, 131
BsmAI	GTCTC	1 cut(s)	133
BsoBI	CYCGRG	1 cut(s)	110
Bsp143I	GATC	2 cut(s)	81, 85
BspACI	CCGC	1 cut(s)	51
BspCNI	CTCAG	1 cut(s)	46
BspDI	ATCGAT	1 cut(s)	84
BspMI	ACCTGC	1 cut(s)	159
BsrDI	GCAATG	1 cut(s)	161
BsrFI	RCCGGY	1 cut(s)	38
BssAI	RCCGGY	1 cut(s)	38
BssECI	CCNNGG	1 cut(s)	123
BssMI	GATC	2 cut(s)	81, 85
BstDEI	CTNAG	1 cut(s)	54
BstENI	CCTNNNNNAGG	1 cut(s)	110
BstKTI	GATC	2 cut(s)	84, 88
BstMAI	GTCTC	1 cut(s)	133
BstMBI	GATC	2 cut(s)	81, 85
BstMCI	CGRYCG	1 cut(s)	84
BstNSI	RCATGY	1 cut(s)	79
BstSCI	CCNGG	1 cut(s)	123
Bsu15I	ATCGAT	1 cut(s)	84
BsuTUI	ATCGAT	1 cut(s)	84
BveI	ACCTGC	1 cut(s)	159
Cfr10I	RCCGGY	1 cut(s)	38
ClaI	ATCGAT	1 cut(s)	84
CspAI	ACCGGT	1 cut(s)	38
CviAII	CATG	1 cut(s)	76
DdeI	CTNAG	1 cut(s)	54
DpnI	GATC	2 cut(s)	83, 87
DpnII	GATC	2 cut(s)	81, 85
Eco88I	CYCGRG	1 cut(s)	110
EcoNI	CCTNNNNNAGG	1 cut(s)	110
FaeI	CATG	1 cut(s)	79
FaiI	YATR	1 cut(s)	77
FatI	CATG	1 cut(s)	75
Fnu4HI	GCNGC	1 cut(s)	51
Fsp4HI	GCNGC	1 cut(s)	51
GluI	GCNGC	1 cut(s)	51
HapII	CCGG	2 cut(s)	39, 125
Hin1II	CATG	1 cut(s)	79
HinfI	GANTC	1 cut(s)	141
HpaII	CCGG	2 cut(s)	39, 125
HphI	GGTGA	2 cut(s)	22, 140
Hpy188III	TCNNGA	2 cut(s)	89, 110
HpyAV	CCTTC	2 cut(s)	7, 116
HpyCH4V	TGCA	1 cut(s)	154
HpyF3I	CTNAG	1 cut(s)	54
Hsp92II	CATG	1 cut(s)	79
Kzo9I	GATC	2 cut(s)	81, 85
LpnPI	CCDG	3 cut(s)	52, 138, 164
MalI	GATC	2 cut(s)	83, 87
MboI	GATC	2 cut(s)	81, 85
MboII	GAAGA	1 cut(s)	128
MluCI	AATT	2 cut(s)	25, 161
MlyI	GAGTC	1 cut(s)	135
MnlI	CCTC	3 cut(s)	49, 64, 106
MspA1I	CMGCKG	1 cut(s)	53
MspI	CCGG	2 cut(s)	39, 125
MspR9I	CCNGG	1 cut(s)	125
NciI	CCSGG	1 cut(s)	125
NdeII	GATC	2 cut(s)	81, 85
NlaIII	CATG	1 cut(s)	79
NspI	RCATGY	1 cut(s)	79
PaeR7I	CTCGAG	1 cut(s)	110
PaqCI	CACCTGC	1 cut(s)	159
PciI	ACATGT	1 cut(s)	75
PinAI	ACCGGT	1 cut(s)	38
PkrI	GCNGC	1 cut(s)	52
Ple19I	CGATCG	1 cut(s)	84
PleI	GAGTC	1 cut(s)	135
PpsI	GAGTC	1 cut(s)	135
PscI	ACATGT	1 cut(s)	75
PvuI	CGATCG	1 cut(s)	84
SatI	GCNGC	1 cut(s)	51
Sau3AI	GATC	2 cut(s)	81, 85
SchI	GAGTC	1 cut(s)	135
ScrFI	CCNGG	1 cut(s)	125
SetI	ASST	1 cut(s)	153
Sfr274I	CTCGAG	1 cut(s)	110
SgrAI	CRCCGGYG	1 cut(s)	38
SlaI	CTCGAG	1 cut(s)	110
SmlI	CTYRAG	1 cut(s)	110
SmoI	CTYRAG	1 cut(s)	110
Sse9I	AATT	2 cut(s)	25, 161
SsiI	CCGC	1 cut(s)	51
StyD4I	CCNGG	1 cut(s)	123
TaqI	TCGA	4 cut(s)	80, 84, 90, 111
TasI	AATT	2 cut(s)	25, 161
TauI	GCSGC	1 cut(s)	53
TspDTI	ATGAA	1 cut(s)	155
XagI	CCTNNNNNAGG	1 cut(s)	110
XapI	RAATTY	1 cut(s)	161
XceI	RCATGY	1 cut(s)	79
XhoI	CTCGAG	1 cut(s)	110

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.