Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00256

Orthogroup ID

OG0005021

Physical Location & Seq

Genomic Coordinates Reverse (-)

32398 .. 35948

Gene Structure 3551 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G006900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2025 bp

ATGTGCAGCGATTCAAATCTGACGAAGCTTCACCGTCTGATCGACGATTCTCTCCGTCAGTACACAGAACCAGATGTCGTTTCGGTAGCGAAAGAGAGAGAAATTCTGGTCAGTCTCTCTCAGATTCTTCGGCAAGTGAAGCTCTGGATTGGAGAAGTTGATTCCCATTCTGATAATGGAGTGGTGATTGGATTGGATTTTGAGAATGAGTGTATGTGTCTGAGTAAAATCTTAACTCACTTGGTTGTTTTGCTAACAGTGGAGAGTCAATATGTGAAGCATCTGGCCTGCAATGTTCTAGCTGCTGTGTCCGAATTCGTGGCGGCTTCGGGAAGCCACTGGGATGCCTTTATTCGTTTGTTGTGTGATTGTATGGATTTGGCAATCACTGCGGCAGTTTCATGTTCTACATCGACTTTGGCAACTGGAGCTAGTGATCTTTGTTTTAGTTCATTGAGTTTAATTCTCGTGCTGAAACCTAAGGTGAAAAATGGTGACTGGTCTGTAGCGGCTGGTGTTGTTAGGGTGCTACGTGATATACTGAAGTATTTGAAGTCTGAGGATGATGACGAACTTGTTGAAGTGTTCATTGAGGCTGTTAATTCTTTTCTTTCAACAGTGCCTTGGGATTTATTGCATGAGATTCATGTTGGTCCAAATGCTGATGCTCTGAAATGCTCCAGGGCAGATGTTTCATTCCAAAGAACCTTGTTTCTAGGAAACTTGATTCAGTTTCTCTGTTCCTTGGTCGAGCAAGGCCGTGTTGTCGATGCTTCAGGTGGATCTCTAGACAAGCATCATCCAGTGTTTTCTAGAATCATCAATCTTGTACCTAAGCTTTTATGTTTATGCCTTGGGGAGCAAGTGGATTGTGTTATCTCTAACAACTGCATCTCTCAATACTTTAAACACAAGTTATTGGTGCTAATGATCAGGCTCATTGTCCAAACTTGTCCAGAATCCTCAATTCTTGTTTCATGGTTGCAACTTATCCATTATTACTTTGAAGAGCTTTTGCGGCAACCCATTTCTACTCTGGAGTGTAATCAGGAAGATTGTTTGGAAGGCTCTCCATTTCTATCCAGTGTTTCTGATTCAGAAGTAAATAATCTGTCTTCTCGCCATCTGCAAAGACAGGCTGTGTTCCTTTTTCTGAGGTGTTCTTTTAGTTTGATCAACTCAAATGGAGGCACTAACAGAAAATGTGCTTGTGCAAGTTGGAATTTATGCTTGGACTATGACTCAAATGCAGAGTTGCAGTGTTGTGGAAGAAAGGAAGGACTGTTGGAGCTTAATAACTGGCTTCAAGGACATCTTCCAACTGATATGTTAGTGGACCATGAAATGTATTTTGAAAAATGTGCAGACTTTGCCAAATCCTTCCTCCAACTATGTATCAAAGAGGTGATGATGTATTATTTCAGAGTGCTCTTGCAATTGCTTTGTGTACCTTGTCCTGCAGAGAAACAGTTTGAAGAGGAAAGGGGATCATTTCAGGATTCAAAGGGCAATGTGCTTTTCTTTGTCTCAGATCTTTTCAATCCTGTACTCTTATTCCATCTATTTCTTGTAGAGTTAAGCTATGACCATCAGGTGCTTCTTGATTACCTTATTTCAAAAGATACTGGAATCAGTTGTGCAGAATATCTTTTAAGGTGCTTGCGTAAAGTGTGTGATTCATGGAGCTTATTTGTGGAATTTCCACCGAGTGGACAAGCTATAAATCGATCATCTTGCAAGAAAAGAAAAGTTTCATTGAATGGGTCGAGTTTCTGTGGAGCAGATTTGTTTGTGCTAGTGAAAGACTCTGGAGGTTTGTTTGTTTGTGCTAATGAATGTGATGATGAAAACAAATATGATTTCAAGCACACTCGAGAGAATTTCCAAAAAGCCAAAGAGTGCTTAATTTCGTTGAAAAATTCGATTGAAAGTCTCCACCAAAAGAATCTATTTCCCTACAATCCTAATGCTCTTTTGAACCGCTTAATGAGGTTTCAGGAACTCTGTTTCGAGGAGGAAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LINES_C LINES_N

Protein Analysis

674

Amino Acids

76.14

Weight (kDa)

5.32

Isoelectric Point (pI)

43.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LINES_N	PF14694	510 - 566	7.4e-08	Lines N-terminus
LINES_C	PF14695	631 - 667	4.2e-15	Lines C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005021)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50430 AT3G50430
fragaria_vesca	FvH4_1g14850
malus_domestica	MD06G1092200.v1.1 MD15G1276100.v1.1
prunus_persica	Prupe.5G239300_v2.0.a1 Prupe.7G141900_v2.0.a1 Prupe.7G141900_v2.0.a1
pyrus_communis	pycom06g08810 pycom15g23900 pycom15g23910
rosa_chinensis	RchiOBHm_Chr1g0329901 RchiOBHm_Chr2g0103811
rosa_laevigata	RLG00000017265 RLG00000029854
rosa_multiflora	Rmu_sc0000112.1_g000009 Rmu_sc0001286.1_g000019
rosa_roxburghii	Rroxscaffold_2G00139340 Rroxscaffold_4G00320520
rosa_rugosa	Rorug01G0084200 Rorug02G0117400
rosa_samantha	Rh1BG081300 Rh1DG105200 Rh2AG166500 Rh2CG172400
rosa_wichuraiana	Rw0G006900 Rw1G008080 Rw1G008130 Rw2G013040 Rw4G001250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1709
AciI	CCGC	5 cut(s)	323, 392, 509, 1018, 1981
AclWI	GGATC	2 cut(s)	790, 1495
AcsI	RAATTY	6 cut(s)	102, 314, 1222, 1697, 1879, 1918
AcuI	CTGAAG	2 cut(s)	563, 759
AdeI	CACNNNGTG	1 cut(s)	1709
AfaI	GTAC	4 cut(s)	62, 831, 1449, 1548
AfiI	CCNNNNNNNGG	1 cut(s)	1709
AjnI	CCWGG	1 cut(s)	680
AjuI	GAANNNNNNNTTGG	2 cut(s)	1214, 1246
Alw21I	GWGCWC	1 cut(s)	1431
Alw26I	GTCTC	3 cut(s)	119, 1531, 1937
AlwI	GGATC	2 cut(s)	790, 1495
Ama87I	CYCGRG	1 cut(s)	1872
AoxI	GGCC	2 cut(s)	285, 757
ApeKI	GCWGC	2 cut(s)	6, 302
ApoI	RAATTY	6 cut(s)	102, 314, 1222, 1697, 1879, 1918
Asp700I	GAANNNNTTC	1 cut(s)	1750
AspS9I	GGNCC	2 cut(s)	653, 1336
AsuHPI	GGTGA	5 cut(s)	23, 196, 496, 506, 1417
AvaI	CYCGRG	1 cut(s)	1872
AvaII	GGWCC	2 cut(s)	653, 1336
AxyI	CCTNAGG	1 cut(s)	480
BauI	CACGAG	1 cut(s)	467
BbsI	GAAGAC	1 cut(s)	1107
Bbv12I	GWGCWC	1 cut(s)	1431
BbvI	GCAGC	2 cut(s)	18, 289
BccI	CCATC	3 cut(s)	1131, 1566, 1596
BceAI	ACGGC	1 cut(s)	744
BcgI	CGANNNNNNTGC	2 cut(s)	1716, 1750
BciT130I	CCWGG	1 cut(s)	682
BclI	TGATCA	2 cut(s)	930, 1173
BcoDI	GTCTC	3 cut(s)	119, 1531, 1937
BfaI	CTAG	6 cut(s)	299, 432, 716, 788, 813, 1796
BfmI	CTRYAG	2 cut(s)	504, 1458
BglII	AGATCT	1 cut(s)	1531
BisI	GCNGC	6 cut(s)	7, 303, 324, 393, 510, 1019
BlsI	GCNGC	6 cut(s)	8, 304, 325, 394, 511, 1020
Bme1390I	CCNGG	1 cut(s)	682
Bme18I	GGWCC	2 cut(s)	653, 1336
BmeT110I	CYCGRG	1 cut(s)	1872
BmgT120I	GGNCC	2 cut(s)	653, 1336
BmrFI	CCNGG	1 cut(s)	682
BmrI	ACTGGG	1 cut(s)	349
BmsI	GCATC	6 cut(s)	289, 334, 655, 760, 805, 900
BmuI	ACTGGG	1 cut(s)	349
BpiI	GAAGAC	1 cut(s)	1107
BpmI	CTGGAG	4 cut(s)	447, 664, 1058, 1830
Bpu10I	CCTNAGC	1 cut(s)	834
Bsa29I	ATCGAT	1 cut(s)	1726
BsaAI	YACGTR	1 cut(s)	533
BsaBI	GATNNNNATC	1 cut(s)	15
BsaJI	CCNNGG	4 cut(s)	623, 681, 744, 853
Bsc4I	CCNNNNNNNGG	1 cut(s)	1709
Bse1I	ACTGG	7 cut(s)	344, 430, 503, 803, 1083, 1304, 1630
Bse21I	CCTNAGG	1 cut(s)	480
Bse3DI	GCAATG	2 cut(s)	298, 1516
Bse8I	GATNNNNATC	1 cut(s)	15
BseBI	CCWGG	1 cut(s)	682
BseCI	ATCGAT	1 cut(s)	1726
BseDI	CCNNGG	4 cut(s)	623, 681, 744, 853
BseGI	GGATG	3 cut(s)	349, 568, 799
BseJI	GATNNNNATC	1 cut(s)	15
BseLI	CCNNNNNNNGG	1 cut(s)	1709
BseMI	GCAATG	2 cut(s)	298, 1516
BseMII	CTCAG	5 cut(s)	134, 212, 549, 1145, 1542
BseNI	ACTGG	7 cut(s)	344, 430, 503, 803, 1083, 1304, 1630
BseXI	GCAGC	2 cut(s)	18, 289
BsgI	GTGCAG	3 cut(s)	25, 1383, 1659
BshFI	GGCC	2 cut(s)	287, 759
BshVI	ATCGAT	1 cut(s)	1726
BsiHKAI	GWGCWC	1 cut(s)	1431
BsiHKCI	CYCGRG	1 cut(s)	1872
BslI	CCNNNNNNNGG	1 cut(s)	1709
BsmAI	GTCTC	3 cut(s)	119, 1531, 1937
BsnI	GGCC	2 cut(s)	287, 759
BsoBI	CYCGRG	1 cut(s)	1872
Bsp1286I	GDGCHC	1 cut(s)	1431
Bsp143I	GATC	8 cut(s)	39, 436, 782, 930, 1173, 1487, 1531, 1727
BspACI	CCGC	5 cut(s)	323, 392, 509, 1018, 1981
BspANI	GGCC	2 cut(s)	287, 759
BspCNI	CTCAG	5 cut(s)	133, 213, 550, 1146, 1541
BspDI	ATCGAT	1 cut(s)	1726
BspMAI	CTGCAG	1 cut(s)	1462
BspPI	GGATC	2 cut(s)	790, 1495
BspQI	GCTCTTC	1 cut(s)	1002
BsrDI	GCAATG	2 cut(s)	298, 1516
BsrI	ACTGG	7 cut(s)	344, 430, 503, 803, 1083, 1304, 1630
BssECI	CCNNGG	4 cut(s)	623, 681, 744, 853
BssMI	GATC	8 cut(s)	39, 436, 782, 930, 1173, 1487, 1531, 1727
BssSI	CACGAG	1 cut(s)	467
BssT1I	CCWWGG	3 cut(s)	623, 744, 853
Bst2BI	CACGAG	1 cut(s)	467
Bst2UI	CCWGG	1 cut(s)	682
Bst4CI	ACNGT	5 cut(s)	35, 259, 619, 1284, 1470
Bst6I	CTCTTC	2 cut(s)	1002, 1470
BstAPI	GCANNNNNTGC	2 cut(s)	389, 1370
BstBAI	YACGTR	1 cut(s)	533
BstC8I	GCNNGC	2 cut(s)	289, 1661
BstDEI	CTNAG	7 cut(s)	120, 221, 480, 558, 834, 1154, 1528
BstF5I	GGATG	3 cut(s)	349, 568, 799
BstKTI	GATC	8 cut(s)	42, 439, 785, 933, 1176, 1490, 1534, 1730
BstMAI	GTCTC	3 cut(s)	119, 1531, 1937
BstMBI	GATC	8 cut(s)	39, 436, 782, 930, 1173, 1487, 1531, 1727
BstMWI	GCNNNNNNNGC	5 cut(s)	139, 389, 428, 1018, 1370
BstNI	CCWGG	1 cut(s)	682
BstSCI	CCNGG	1 cut(s)	680
BstSFI	CTRYAG	2 cut(s)	504, 1458
BstV1I	GCAGC	2 cut(s)	18, 289
BstV2I	GAAGAC	1 cut(s)	1107
BstX2I	RGATCY	2 cut(s)	782, 1531
BstYI	RGATCY	2 cut(s)	782, 1531
Bsu15I	ATCGAT	1 cut(s)	1726
Bsu36I	CCTNAGG	1 cut(s)	480
BsuRI	GGCC	2 cut(s)	287, 759
BsuTUI	ATCGAT	1 cut(s)	1726
BtsCI	GGATG	3 cut(s)	349, 568, 799
BtsI	GCAGTG	2 cut(s)	387, 1265
BtsIMutI	CAGTG	7 cut(s)	264, 337, 387, 624, 810, 1090, 1265
Cac8I	GCNNGC	2 cut(s)	289, 1661
Cfr13I	GGNCC	2 cut(s)	653, 1336
ClaI	ATCGAT	1 cut(s)	1726
Csp6I	GTAC	4 cut(s)	61, 830, 1448, 1547
CviAII	CATG	6 cut(s)	402, 638, 647, 978, 1340, 1680
CviQI	GTAC	4 cut(s)	61, 830, 1448, 1547
DdeI	CTNAG	7 cut(s)	120, 221, 480, 558, 834, 1154, 1528
DpnI	GATC	8 cut(s)	41, 438, 784, 932, 1175, 1489, 1533, 1729
DpnII	GATC	8 cut(s)	39, 436, 782, 930, 1173, 1487, 1531, 1727
DraI	TTTAAA	1 cut(s)	907
DraIII	CACNNNGTG	1 cut(s)	1709
Eam1104I	CTCTTC	2 cut(s)	1002, 1470
EarI	CTCTTC	2 cut(s)	1002, 1470
Eco130I	CCWWGG	3 cut(s)	623, 744, 853
Eco47I	GGWCC	2 cut(s)	653, 1336
Eco57I	CTGAAG	2 cut(s)	563, 759
Eco81I	CCTNAGG	1 cut(s)	480
Eco88I	CYCGRG	1 cut(s)	1872
EcoRI	GAATTC	1 cut(s)	314
EcoRII	CCWGG	1 cut(s)	680
EcoT14I	CCWWGG	3 cut(s)	623, 744, 853
ErhI	CCWWGG	3 cut(s)	623, 744, 853
FaeI	CATG	6 cut(s)	405, 641, 650, 981, 1343, 1683
FalI	AAGNNNNNCTT	2 cut(s)	1299, 1331
FatI	CATG	6 cut(s)	401, 637, 646, 977, 1339, 1679
FbaI	TGATCA	2 cut(s)	930, 1173
Fnu4HI	GCNGC	6 cut(s)	7, 303, 324, 393, 510, 1019
FokI	GGATG	3 cut(s)	356, 575, 786
Fsp4HI	GCNGC	6 cut(s)	7, 303, 324, 393, 510, 1019
FspBI	CTAG	6 cut(s)	299, 432, 716, 788, 813, 1796
GluI	GCNGC	6 cut(s)	7, 303, 324, 393, 510, 1019
GsuI	CTGGAG	4 cut(s)	447, 664, 1058, 1830
HaeIII	GGCC	2 cut(s)	287, 759
Hin1II	CATG	6 cut(s)	405, 641, 650, 981, 1343, 1683
HindIII	AAGCTT	2 cut(s)	26, 836
HphI	GGTGA	5 cut(s)	23, 196, 496, 506, 1417
Hpy166II	GTNNAC	4 cut(s)	63, 1336, 1448, 1712
Hpy8I	GTNNAC	4 cut(s)	63, 1336, 1448, 1712
Hpy99I	CGWCG	1 cut(s)	47
HpyAV	CCTTC	3 cut(s)	1058, 1271, 1390
HpyCH4III	ACNGT	5 cut(s)	35, 259, 619, 1284, 1470
HpyCH4IV	ACGT	1 cut(s)	532
HpyF10VI	GCNNNNNNNGC	5 cut(s)	139, 389, 428, 1018, 1370
HpyF3I	CTNAG	7 cut(s)	120, 221, 480, 558, 834, 1154, 1528
HpySE526I	ACGT	1 cut(s)	532
Hsp92II	CATG	6 cut(s)	405, 641, 650, 981, 1343, 1683
Ksp22I	TGATCA	2 cut(s)	930, 1173
Kzo9I	GATC	8 cut(s)	39, 436, 782, 930, 1173, 1487, 1531, 1727
LguI	GCTCTTC	1 cut(s)	1002
LmnI	GCTCC	6 cut(s)	428, 683, 859, 1288, 1683, 1778
Lsp1109I	GCAGC	2 cut(s)	18, 289
LweI	GCATC	6 cut(s)	289, 334, 655, 760, 805, 900
MaeI	CTAG	6 cut(s)	299, 432, 716, 788, 813, 1796
MaeII	ACGT	1 cut(s)	532
MaeIII	GTNAC	1 cut(s)	494
MalI	GATC	8 cut(s)	41, 438, 784, 932, 1175, 1489, 1533, 1729
MboI	GATC	8 cut(s)	39, 436, 782, 930, 1173, 1487, 1531, 1727
MboII	GAAGA	7 cut(s)	119, 1019, 1064, 1107, 1281, 1307, 1487
MfeI	CAATTG	1 cut(s)	1436
MflI	RGATCY	2 cut(s)	782, 1531
MhlI	GDGCHC	1 cut(s)	1431
MlyI	GAGTC	3 cut(s)	274, 1235, 1799
MmeI	TCCRAC	4 cut(s)	1199, 1266, 1343, 1411
MroXI	GAANNNNTTC	1 cut(s)	1750
MseI	TTAA	9 cut(s)	233, 461, 600, 906, 1293, 1577, 1652, 1904, 1985
MslI	CAYNNNNRTG	1 cut(s)	342
MspR9I	CCNGG	1 cut(s)	682
MunI	CAATTG	1 cut(s)	1436
MvaI	CCWGG	1 cut(s)	682
MwoI	GCNNNNNNNGC	5 cut(s)	139, 389, 428, 1018, 1370
NdeII	GATC	8 cut(s)	39, 436, 782, 930, 1173, 1487, 1531, 1727
NlaIII	CATG	6 cut(s)	405, 641, 650, 981, 1343, 1683
NmuCI	GTSAC	1 cut(s)	494
PaeR7I	CTCGAG	1 cut(s)	1872
PciSI	GCTCTTC	1 cut(s)	1002
PdmI	GAANNNNTTC	1 cut(s)	1750
PflMI	CCANNNNNTGG	1 cut(s)	1709
PkrI	GCNGC	6 cut(s)	8, 304, 325, 394, 511, 1020
PleI	GAGTC	3 cut(s)	273, 1235, 1799
PpsI	GAGTC	3 cut(s)	273, 1235, 1799
Ppu21I	YACGTR	1 cut(s)	533
Psp6I	CCWGG	1 cut(s)	680
PspGI	CCWGG	1 cut(s)	680
PspPI	GGNCC	2 cut(s)	653, 1336
PstI	CTGCAG	1 cut(s)	1462
PsuI	RGATCY	2 cut(s)	782, 1531
RsaI	GTAC	4 cut(s)	62, 831, 1449, 1548
RsaNI	GTAC	4 cut(s)	61, 830, 1448, 1547
RseI	CAYNNNNRTG	1 cut(s)	342
SapI	GCTCTTC	1 cut(s)	1002
SaqAI	TTAA	9 cut(s)	233, 461, 600, 906, 1293, 1577, 1652, 1904, 1985
SatI	GCNGC	6 cut(s)	7, 303, 324, 393, 510, 1019
Sau3AI	GATC	8 cut(s)	39, 436, 782, 930, 1173, 1487, 1531, 1727
Sau96I	GGNCC	2 cut(s)	653, 1336
SchI	GAGTC	3 cut(s)	274, 1235, 1799
ScrFI	CCNGG	1 cut(s)	682
SduI	GDGCHC	1 cut(s)	1431
SfaNI	GCATC	6 cut(s)	289, 334, 655, 760, 805, 900
SfcI	CTRYAG	2 cut(s)	504, 1458
Sfr274I	CTCGAG	1 cut(s)	1872
SinI	GGWCC	2 cut(s)	653, 1336
SlaI	CTCGAG	1 cut(s)	1872
SmiMI	CAYNNNNRTG	1 cut(s)	342
SmlI	CTYRAG	1 cut(s)	1872
SmoI	CTYRAG	1 cut(s)	1872
SsiI	CCGC	5 cut(s)	323, 392, 509, 1018, 1981
SspMI	CTAG	6 cut(s)	299, 432, 716, 788, 813, 1796
StyD4I	CCNGG	1 cut(s)	680
StyI	CCWWGG	3 cut(s)	623, 744, 853
TaaI	ACNGT	5 cut(s)	35, 259, 619, 1284, 1470
TaiI	ACGT	1 cut(s)	535
TaqI	TCGA	9 cut(s)	42, 413, 750, 768, 1726, 1766, 1873, 1922, 2010
TatI	WGTACW	2 cut(s)	60, 1546
TauI	GCSGC	4 cut(s)	326, 395, 512, 1021
Tru1I	TTAA	9 cut(s)	233, 461, 600, 906, 1293, 1577, 1652, 1904, 1985
Tru9I	TTAA	9 cut(s)	233, 461, 600, 906, 1293, 1577, 1652, 1904, 1985
TscAI	CASTG	7 cut(s)	264, 344, 394, 624, 810, 1090, 1265
TseFI	GTSAC	1 cut(s)	494
TseI	GCWGC	2 cut(s)	6, 302
Tsp45I	GTSAC	1 cut(s)	494
TspGWI	ACGGA	1 cut(s)	44
TspRI	CASTG	7 cut(s)	264, 344, 394, 624, 810, 1090, 1265
Van91I	CCANNNNNTGG	1 cut(s)	1709
VpaK11BI	GGWCC	2 cut(s)	653, 1336
XapI	RAATTY	6 cut(s)	102, 314, 1222, 1697, 1879, 1918
XbaI	TCTAGA	2 cut(s)	787, 812
XcmI	CCANNNNNNNNNTGG	2 cut(s)	173, 1033
XhoI	CTCGAG	1 cut(s)	1872
XmnI	GAANNNNTTC	1 cut(s)	1750
XspI	CTAG	6 cut(s)	299, 432, 716, 788, 813, 1796

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.