Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0005021

Physical Location & Seq

Genomic Coordinates Forward (+)

17405771 .. 17406930

Gene Structure 1160 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G008080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGATGACGAACTTGTTGAAGTGTTCATTGAGGCTGTTAATTCTTTTCTTTCAACAGTGCCTTGGGGATTTATTGCATGAGATTCGTGTTGGTCCAAATGCTGATGCTCTGAAATGCTCCAGGGCAGATGTTTCATTCCAAAGAACCTTGTTTCTAGGAAACTTGATTCAGTTTCTCTGTTCCTTGGTCGAGCAAGGCAGTGTTGTCGATGCTCCAGGTGGATCTCTAGACCAGCATCATCCAGTGTTTTCTAGAATCATCAACCTTGTACCTAAGCTTTTACGTTTATGCCTTGGGGAGCAGGCGGATTGTGTTATCTCTCGCAACTGCATCTCTCAATACTTTAAACACAAGTTATTGGTGCTAATGATCAGGCTCATTGTCCAAACTTGTCCAGAATCCTCAATTCTTGTTTCATGGTTGCAACTTATCCATTATTACTTTGAAGAGCTTTTGCGGCAACCCATTTCTACTCTGGAGTGTAATCAGGAAGATTGTTTGGAAGGCTCTCCATTTCTATCCAGTGTTTCTGATTCAGAAGTAAATAGTCTGTCTTCTCGCCATCTGCAAAGACAGGCTGTGTTCCTTTTTCTGAGAGTTGCAGTGTTGTGGAAGAAAGGAAGGACTGTTGGAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LINES_C LINES_N

Protein Analysis

212

Amino Acids

23.97

Weight (kDa)

8.06

Isoelectric Point (pI)

48.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005021)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50430 AT3G50430
fragaria_vesca	FvH4_1g14850
malus_domestica	MD06G1092200.v1.1 MD15G1276100.v1.1
prunus_persica	Prupe.5G239300_v2.0.a1 Prupe.7G141900_v2.0.a1 Prupe.7G141900_v2.0.a1
pyrus_communis	pycom06g08810 pycom15g23900 pycom15g23910
rosa_chinensis	RchiOBHm_Chr1g0329901 RchiOBHm_Chr2g0103811
rosa_laevigata	RLG00000017265 RLG00000029854
rosa_multiflora	Rmu_sc0000112.1_g000009 Rmu_sc0001286.1_g000019
rosa_roxburghii	Rroxscaffold_2G00139340 Rroxscaffold_4G00320520
rosa_rugosa	Rorug01G0084200 Rorug02G0117400
rosa_samantha	Rh1BG081300 Rh1DG105200 Rh2AG166500 Rh2CG172400
rosa_wichuraiana	Rw0G006900 Rw1G008080 Rw1G008130 Rw2G013040 Rw4G001250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	305, 457
AclWI	GGATC	1 cut(s)	229
AfaI	GTAC	1 cut(s)	270
AgsI	TTSAA	3 cut(s)	19, 53, 446
AjnI	CCWGG	2 cut(s)	119, 214
AluBI	AGCT	3 cut(s)	277, 451, 635
AluI	AGCT	3 cut(s)	277, 451, 635
AlwI	GGATC	1 cut(s)	229
AspS9I	GGNCC	1 cut(s)	92
AvaII	GGWCC	1 cut(s)	92
BbsI	GAAGAC	1 cut(s)	546
BccI	CCATC	1 cut(s)	570
BcgI	CGANNNNNNTGC	4 cut(s)	65, 99, 187, 221
BciT130I	CCWGG	2 cut(s)	121, 216
BclI	TGATCA	1 cut(s)	369
BfaI	CTAG	3 cut(s)	155, 227, 252
BisI	GCNGC	1 cut(s)	458
BlsI	GCNGC	1 cut(s)	459
Bme1390I	CCNGG	2 cut(s)	121, 216
Bme18I	GGWCC	1 cut(s)	92
BmgT120I	GGNCC	1 cut(s)	92
BmrFI	CCNGG	2 cut(s)	121, 216
BmsI	GCATC	4 cut(s)	94, 199, 244, 339
BpiI	GAAGAC	1 cut(s)	546
BpmI	CTGGAG	3 cut(s)	103, 198, 497
Bpu10I	CCTNAGC	1 cut(s)	273
BsaJI	CCNNGG	4 cut(s)	61, 120, 183, 292
Bse1I	ACTGG	2 cut(s)	242, 522
BseBI	CCWGG	2 cut(s)	121, 216
BseDI	CCNNGG	4 cut(s)	61, 120, 183, 292
BseGI	GGATG	1 cut(s)	238
BseMII	CTCAG	1 cut(s)	584
BseNI	ACTGG	2 cut(s)	242, 522
Bsp143I	GATC	2 cut(s)	221, 369
BspACI	CCGC	2 cut(s)	305, 457
BspCNI	CTCAG	1 cut(s)	585
BspPI	GGATC	1 cut(s)	229
BspQI	GCTCTTC	1 cut(s)	441
BsrI	ACTGG	2 cut(s)	242, 522
BssECI	CCNNGG	4 cut(s)	61, 120, 183, 292
BssMI	GATC	2 cut(s)	221, 369
BssT1I	CCWWGG	3 cut(s)	61, 183, 292
Bst2UI	CCWGG	2 cut(s)	121, 216
Bst4CI	ACNGT	2 cut(s)	57, 628
Bst6I	CTCTTC	1 cut(s)	441
BstC8I	GCNNGC	1 cut(s)	303
BstDEI	CTNAG	2 cut(s)	273, 593
BstF5I	GGATG	1 cut(s)	238
BstKTI	GATC	2 cut(s)	224, 372
BstMBI	GATC	2 cut(s)	221, 369
BstMWI	GCNNNNNNNGC	1 cut(s)	457
BstNI	CCWGG	2 cut(s)	121, 216
BstSCI	CCNGG	2 cut(s)	119, 214
BstV2I	GAAGAC	1 cut(s)	546
BstX2I	RGATCY	1 cut(s)	221
BstYI	RGATCY	1 cut(s)	221
BtsCI	GGATG	1 cut(s)	238
BtsI	GCAGTG	2 cut(s)	205, 609
BtsIMutI	CAGTG	5 cut(s)	62, 205, 249, 529, 609
Cac8I	GCNNGC	1 cut(s)	303
Cfr13I	GGNCC	1 cut(s)	92
Csp6I	GTAC	1 cut(s)	269
CviAII	CATG	2 cut(s)	77, 417
CviJI	RGCY	7 cut(s)	34, 277, 376, 451, 507, 578, 635
CviKI_1	RGCY	7 cut(s)	34, 277, 376, 451, 507, 578, 635
CviQI	GTAC	1 cut(s)	269
DdeI	CTNAG	2 cut(s)	273, 593
DpnI	GATC	2 cut(s)	223, 371
DpnII	GATC	2 cut(s)	221, 369
DraI	TTTAAA	1 cut(s)	346
Eam1104I	CTCTTC	1 cut(s)	441
EarI	CTCTTC	1 cut(s)	441
EciI	GGCGGA	1 cut(s)	320
Eco130I	CCWWGG	3 cut(s)	61, 183, 292
Eco47I	GGWCC	1 cut(s)	92
EcoRII	CCWGG	2 cut(s)	119, 214
EcoT14I	CCWWGG	3 cut(s)	61, 183, 292
ErhI	CCWWGG	3 cut(s)	61, 183, 292
FaeI	CATG	2 cut(s)	80, 420
FaiI	YATR	3 cut(s)	78, 289, 418
FatI	CATG	2 cut(s)	76, 416
FbaI	TGATCA	1 cut(s)	369
Fnu4HI	GCNGC	1 cut(s)	458
FokI	GGATG	1 cut(s)	225
Fsp4HI	GCNGC	1 cut(s)	458
FspBI	CTAG	3 cut(s)	155, 227, 252
GluI	GCNGC	1 cut(s)	458
GsuI	CTGGAG	3 cut(s)	103, 198, 497
Hin1II	CATG	2 cut(s)	80, 420
HindIII	AAGCTT	1 cut(s)	275
HinfI	GANTC	5 cut(s)	82, 166, 255, 398, 533
Hpy188I	TCNGA	4 cut(s)	111, 532, 538, 594
Hpy188III	TCNNGA	5 cut(s)	227, 252, 395, 476, 488
HpyAV	CCTTC	2 cut(s)	497, 615
HpyCH4III	ACNGT	2 cut(s)	57, 628
HpyCH4IV	ACGT	1 cut(s)	283
HpyCH4V	TGCA	5 cut(s)	76, 330, 424, 568, 602
HpyF10VI	GCNNNNNNNGC	1 cut(s)	457
HpyF3I	CTNAG	2 cut(s)	273, 593
HpySE526I	ACGT	1 cut(s)	283
Hsp92II	CATG	2 cut(s)	80, 420
Ksp22I	TGATCA	1 cut(s)	369
Kzo9I	GATC	2 cut(s)	221, 369
LguI	GCTCTTC	1 cut(s)	441
LmnI	GCTCC	4 cut(s)	122, 217, 298, 632
LweI	GCATC	4 cut(s)	94, 199, 244, 339
MaeI	CTAG	3 cut(s)	155, 227, 252
MaeII	ACGT	1 cut(s)	283
MalI	GATC	2 cut(s)	223, 371
MboI	GATC	2 cut(s)	221, 369
MboII	GAAGA	4 cut(s)	458, 503, 546, 625
MflI	RGATCY	1 cut(s)	221
MluCI	AATT	2 cut(s)	39, 405
MmeI	TCCRAC	1 cut(s)	610
MnlI	CCTC	2 cut(s)	24, 412
MseI	TTAA	3 cut(s)	38, 345, 637
MspR9I	CCNGG	2 cut(s)	121, 216
MvaI	CCWGG	2 cut(s)	121, 216
MwoI	GCNNNNNNNGC	1 cut(s)	457
NdeII	GATC	2 cut(s)	221, 369
NlaIII	CATG	2 cut(s)	80, 420
PciSI	GCTCTTC	1 cut(s)	441
PfeI	GAWTC	5 cut(s)	82, 166, 255, 398, 533
PkrI	GCNGC	1 cut(s)	459
Psp6I	CCWGG	2 cut(s)	119, 214
PspGI	CCWGG	2 cut(s)	119, 214
PspPI	GGNCC	1 cut(s)	92
PsuI	RGATCY	1 cut(s)	221
RsaI	GTAC	1 cut(s)	270
RsaNI	GTAC	1 cut(s)	269
SapI	GCTCTTC	1 cut(s)	441
SaqAI	TTAA	3 cut(s)	38, 345, 637
SatI	GCNGC	1 cut(s)	458
Sau3AI	GATC	2 cut(s)	221, 369
Sau96I	GGNCC	1 cut(s)	92
ScrFI	CCNGG	2 cut(s)	121, 216
SetI	ASST	8 cut(s)	149, 220, 267, 274, 279, 286, 453, 637
SfaNI	GCATC	4 cut(s)	94, 199, 244, 339
SinI	GGWCC	1 cut(s)	92
Sse9I	AATT	2 cut(s)	39, 405
SsiI	CCGC	2 cut(s)	305, 457
SspMI	CTAG	3 cut(s)	155, 227, 252
StyD4I	CCNGG	2 cut(s)	119, 214
StyI	CCWWGG	3 cut(s)	61, 183, 292
TaaI	ACNGT	2 cut(s)	57, 628
TaiI	ACGT	1 cut(s)	286
TaqI	TCGA	2 cut(s)	189, 207
TasI	AATT	2 cut(s)	39, 405
TauI	GCSGC	1 cut(s)	460
TfiI	GAWTC	5 cut(s)	82, 166, 255, 398, 533
Tru1I	TTAA	3 cut(s)	38, 345, 637
Tru9I	TTAA	3 cut(s)	38, 345, 637
TscAI	CASTG	5 cut(s)	62, 205, 249, 529, 609
TspDTI	ATGAA	3 cut(s)	15, 123, 405
TspRI	CASTG	5 cut(s)	62, 205, 249, 529, 609
VpaK11BI	GGWCC	1 cut(s)	92
XbaI	TCTAGA	2 cut(s)	226, 251
XcmI	CCANNNNNNNNNTGG	1 cut(s)	472
XspI	CTAG	3 cut(s)	155, 227, 252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.