Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0005021

Physical Location & Seq

Genomic Coordinates Forward (+)

13586214 .. 13589734

Gene Structure 3521 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G013040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2022 bp

ATGTGCAGCGATTCAAATCTGACGAAGCTTCACCGTCTGATCGACGATTCTCTCCGTCAGTACACAGAACCAGATGTCGTTTCGGTAGCGAAAGAGAGAGAAATTCTGGTCAGTCTCTCTCAGATTCTTTGGCAAGTGAAGCTCTGGATTGGAGAAGTTGATTCCCATTCTGATAATGGAGTGGTGATTGGATTGGATTTTGAGAATGAGTGTATGTGTCTGAGTAAAATCTTAACTCACTTGGTTGTTTTGCTAACAGTGGAGAGTCAATATGTGAAGCATCTGGCCTGCAATGTTCTAGCTGCTGTGTCCGAATTCGTGGCGGCTTCGGGAAGCCACTGGGATGCCTTTATTCGTTTGTTGTGTGATTGTATGGATTTGGCAATCACTGCGGCAGTTTCATGTTCTACATCGACTTTGGCAACTGGAGCTAGTGATCTTTGTTTTAGTTCATTGAGTTTAATTCTCGTGCTGAAACCTAAGGTGAAAAATGGTGACTGGTCTGTAGCGGCTGGTGTTGTTAGGGTGCTACGTGATATACTGAAGTATTTGAAGTCTGAGGATGATGACGAACTTGTTGAAGTGTTCATTGAGGCTGTTAATTCTTTTCTTTCAACAGTGCCTTGGGATTTATTGCATGAGATTCATGTTGGTCCAAATGCTGATGCTCTGAAATGCTCCAGGGCAGATGTTTCATTCCAAAGAACCTTGTTTCTAGGAAACTTGATTCAGTTTCTCTGTTCCTTGGTCGAGCAAGGCCGTGTTGTCGATGCTTCAGGTGGATCTCTAGACAAGCATCATCCAGTGTTTTCTAGAATCATCAATCTTGTACCTAAGCTTTTATGTTTATGCCTTGGGGAGCAAGTGGATTGTGTTATCTCTAACAACTGCATCTCTCAATACTTTAAACACAAGTTATTGGTGCTAATGATCAGGCTCATTGTCCAAACTTGTCCAGAATCCTCAATTCTTGTTTCATGGTTGCAACTTATCCATTATTACTTTGAAGAGCTTTTGCGGCAACCCATTTCTACTCTGGAGTGTAATCAGGAAGATTGTTTGGAAGGCTCTCCATTTCTATCCAGTGTTTCTGATTCAGAAGTAAATAATCTGTCTTCTCGCCATCTGCAAAGACAGGCTGTGTTCCTTTTTCTGAGGTGTTCTTTTAGTTTGATCAACTCAAATGGAGGCACTAACAGAAAATGTGCTTGTGCAAGTTGGAATTTATGCTTGGACTATGACTCAAATGCAGAGTTGCAGTGTTGTGGAAGAAAGGAAGGACTGTTGGAGCTTAATAACTGGCTTCAAGGACATCTTCCAACTGATATGTTAGTGGACCATGAAATGTATTTTGAAAAATGTGCAGACTTTGCCAAATCCTTCCTCCAACTATGTATCAAAGAGGATGATGTATTATTCAGAGTGCTCTTGCAATTGCTTTGTGTACCTTGTCCTGCAGAGAAACAGTTTGAAGAGGAAAGGGGATCATTTCAGGATTCAAAGGGCAATGTGCTTTTCTTTGTCTCAGATCTTTTCAATCCTGTACTCTTATTCCATCTATTTCTTGTAGAGTTAAGCTATGACCATCAGGTGCTTCTTGATTACCTTATTTCAAAAGATACTGGAATCAGTTGTGCAGAATATCTTTTAAGGTGCTTGCGTAAAGTGTGTGATTCATGGAGCTTATTTGTGGAATTTCCACCGAGTGGACAAGCTATAAATCGATCATCTTGCAAGAAAAGAAAAGTTTCATTGAATGGGTCGAGTTTCTGTGGAGCAGATTTGTTTGTGCTAGTGAAAGACTCTGGAGGTTTGTTTCTTGAAGATGAATGTGAAGATGAAAACAAATATGATTTCAAGAAGCACACTCGAGAGAATTTCCAAAAAGCCAAAGAGTGCTTAATTTCATTGAAAAATTCGATTGAAAGTCTCCACCAAAAGAATCTATTTCCCTACAATCCTAATGCTCTTTTGAACCGCTTAATGAGGTTTCAGGAACTCTGTTTCGAGGAGGAAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LINES_C LINES_N

Protein Analysis

673

Amino Acids

76.04

Weight (kDa)

5.17

Isoelectric Point (pI)

43.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LINES_N	PF14694	428 - 565	1.9e-09	Lines N-terminus
LINES_C	PF14695	630 - 666	4.2e-15	Lines C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005021)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50430 AT3G50430
fragaria_vesca	FvH4_1g14850
malus_domestica	MD06G1092200.v1.1 MD15G1276100.v1.1
prunus_persica	Prupe.5G239300_v2.0.a1 Prupe.7G141900_v2.0.a1 Prupe.7G141900_v2.0.a1
pyrus_communis	pycom06g08810 pycom15g23900 pycom15g23910
rosa_chinensis	RchiOBHm_Chr1g0329901 RchiOBHm_Chr2g0103811
rosa_laevigata	RLG00000017265 RLG00000029854
rosa_multiflora	Rmu_sc0000112.1_g000009 Rmu_sc0001286.1_g000019
rosa_roxburghii	Rroxscaffold_2G00139340 Rroxscaffold_4G00320520
rosa_rugosa	Rorug01G0084200 Rorug02G0117400
rosa_samantha	Rh1BG081300 Rh1DG105200 Rh2AG166500 Rh2CG172400
rosa_wichuraiana	Rw0G006900 Rw1G008080 Rw1G008130 Rw2G013040 Rw4G001250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1706
AciI	CCGC	5 cut(s)	323, 392, 509, 1018, 1978
AclWI	GGATC	2 cut(s)	790, 1492
AcsI	RAATTY	6 cut(s)	102, 314, 1222, 1694, 1876, 1915
AcuI	CTGAAG	2 cut(s)	563, 759
AdeI	CACNNNGTG	1 cut(s)	1706
AfaI	GTAC	4 cut(s)	62, 831, 1446, 1545
AfiI	CCNNNNNNNGG	1 cut(s)	1706
AjnI	CCWGG	1 cut(s)	680
AjuI	GAANNNNNNNTTGG	2 cut(s)	1214, 1246
Alw21I	GWGCWC	1 cut(s)	1428
Alw26I	GTCTC	3 cut(s)	119, 1528, 1934
AlwI	GGATC	2 cut(s)	790, 1492
Ama87I	CYCGRG	1 cut(s)	1869
AoxI	GGCC	2 cut(s)	285, 757
ApeKI	GCWGC	2 cut(s)	6, 302
ApoI	RAATTY	6 cut(s)	102, 314, 1222, 1694, 1876, 1915
Asp700I	GAANNNNTTC	1 cut(s)	1747
AspS9I	GGNCC	2 cut(s)	653, 1336
AsuHPI	GGTGA	4 cut(s)	23, 196, 496, 506
AvaI	CYCGRG	1 cut(s)	1869
AvaII	GGWCC	2 cut(s)	653, 1336
AxyI	CCTNAGG	1 cut(s)	480
BauI	CACGAG	1 cut(s)	467
BbsI	GAAGAC	1 cut(s)	1107
Bbv12I	GWGCWC	1 cut(s)	1428
BbvI	GCAGC	2 cut(s)	18, 289
BccI	CCATC	3 cut(s)	1131, 1563, 1593
BceAI	ACGGC	1 cut(s)	744
BcgI	CGANNNNNNTGC	2 cut(s)	1713, 1747
BciT130I	CCWGG	1 cut(s)	682
BclI	TGATCA	2 cut(s)	930, 1173
BcoDI	GTCTC	3 cut(s)	119, 1528, 1934
BfaI	CTAG	6 cut(s)	299, 432, 716, 788, 813, 1793
BfmI	CTRYAG	2 cut(s)	504, 1455
BglII	AGATCT	1 cut(s)	1528
BisI	GCNGC	6 cut(s)	7, 303, 324, 393, 510, 1019
BlsI	GCNGC	6 cut(s)	8, 304, 325, 394, 511, 1020
Bme1390I	CCNGG	1 cut(s)	682
Bme18I	GGWCC	2 cut(s)	653, 1336
BmeT110I	CYCGRG	1 cut(s)	1869
BmgT120I	GGNCC	2 cut(s)	653, 1336
BmrFI	CCNGG	1 cut(s)	682
BmrI	ACTGGG	1 cut(s)	349
BmsI	GCATC	6 cut(s)	289, 334, 655, 760, 805, 900
BmuI	ACTGGG	1 cut(s)	349
BpiI	GAAGAC	1 cut(s)	1107
BpmI	CTGGAG	4 cut(s)	447, 664, 1058, 1827
Bpu10I	CCTNAGC	1 cut(s)	834
Bsa29I	ATCGAT	1 cut(s)	1723
BsaAI	YACGTR	1 cut(s)	533
BsaBI	GATNNNNATC	1 cut(s)	15
BsaJI	CCNNGG	4 cut(s)	623, 681, 744, 853
Bsc4I	CCNNNNNNNGG	1 cut(s)	1706
Bse1I	ACTGG	7 cut(s)	344, 430, 503, 803, 1083, 1304, 1627
Bse21I	CCTNAGG	1 cut(s)	480
Bse3DI	GCAATG	2 cut(s)	298, 1513
Bse8I	GATNNNNATC	1 cut(s)	15
BseBI	CCWGG	1 cut(s)	682
BseCI	ATCGAT	1 cut(s)	1723
BseDI	CCNNGG	4 cut(s)	623, 681, 744, 853
BseGI	GGATG	4 cut(s)	349, 568, 799, 1411
BseJI	GATNNNNATC	1 cut(s)	15
BseLI	CCNNNNNNNGG	1 cut(s)	1706
BseMI	GCAATG	2 cut(s)	298, 1513
BseMII	CTCAG	5 cut(s)	134, 212, 549, 1145, 1539
BseNI	ACTGG	7 cut(s)	344, 430, 503, 803, 1083, 1304, 1627
BseXI	GCAGC	2 cut(s)	18, 289
BsgI	GTGCAG	3 cut(s)	25, 1383, 1656
BshFI	GGCC	2 cut(s)	287, 759
BshVI	ATCGAT	1 cut(s)	1723
BsiHKAI	GWGCWC	1 cut(s)	1428
BsiHKCI	CYCGRG	1 cut(s)	1869
BslI	CCNNNNNNNGG	1 cut(s)	1706
BsmAI	GTCTC	3 cut(s)	119, 1528, 1934
BsnI	GGCC	2 cut(s)	287, 759
BsoBI	CYCGRG	1 cut(s)	1869
Bsp1286I	GDGCHC	1 cut(s)	1428
Bsp143I	GATC	8 cut(s)	39, 436, 782, 930, 1173, 1484, 1528, 1724
BspACI	CCGC	5 cut(s)	323, 392, 509, 1018, 1978
BspANI	GGCC	2 cut(s)	287, 759
BspCNI	CTCAG	5 cut(s)	133, 213, 550, 1146, 1538
BspDI	ATCGAT	1 cut(s)	1723
BspMAI	CTGCAG	1 cut(s)	1459
BspPI	GGATC	2 cut(s)	790, 1492
BspQI	GCTCTTC	1 cut(s)	1002
BsrDI	GCAATG	2 cut(s)	298, 1513
BsrI	ACTGG	7 cut(s)	344, 430, 503, 803, 1083, 1304, 1627
BssECI	CCNNGG	4 cut(s)	623, 681, 744, 853
BssMI	GATC	8 cut(s)	39, 436, 782, 930, 1173, 1484, 1528, 1724
BssSI	CACGAG	1 cut(s)	467
BssT1I	CCWWGG	3 cut(s)	623, 744, 853
Bst2BI	CACGAG	1 cut(s)	467
Bst2UI	CCWGG	1 cut(s)	682
Bst4CI	ACNGT	5 cut(s)	35, 259, 619, 1284, 1467
Bst6I	CTCTTC	2 cut(s)	1002, 1467
BstAPI	GCANNNNNTGC	2 cut(s)	389, 1370
BstBAI	YACGTR	1 cut(s)	533
BstC8I	GCNNGC	2 cut(s)	289, 1658
BstDEI	CTNAG	7 cut(s)	120, 221, 480, 558, 834, 1154, 1525
BstF5I	GGATG	4 cut(s)	349, 568, 799, 1411
BstKTI	GATC	8 cut(s)	42, 439, 785, 933, 1176, 1487, 1531, 1727
BstMAI	GTCTC	3 cut(s)	119, 1528, 1934
BstMBI	GATC	8 cut(s)	39, 436, 782, 930, 1173, 1484, 1528, 1724
BstMWI	GCNNNNNNNGC	5 cut(s)	139, 389, 428, 1018, 1370
BstNI	CCWGG	1 cut(s)	682
BstSCI	CCNGG	1 cut(s)	680
BstSFI	CTRYAG	2 cut(s)	504, 1455
BstV1I	GCAGC	2 cut(s)	18, 289
BstV2I	GAAGAC	1 cut(s)	1107
BstX2I	RGATCY	2 cut(s)	782, 1528
BstYI	RGATCY	2 cut(s)	782, 1528
Bsu15I	ATCGAT	1 cut(s)	1723
Bsu36I	CCTNAGG	1 cut(s)	480
BsuRI	GGCC	2 cut(s)	287, 759
BsuTUI	ATCGAT	1 cut(s)	1723
BtsCI	GGATG	4 cut(s)	349, 568, 799, 1411
BtsI	GCAGTG	2 cut(s)	387, 1265
BtsIMutI	CAGTG	7 cut(s)	264, 337, 387, 624, 810, 1090, 1265
Cac8I	GCNNGC	2 cut(s)	289, 1658
Cfr13I	GGNCC	2 cut(s)	653, 1336
ClaI	ATCGAT	1 cut(s)	1723
Csp6I	GTAC	4 cut(s)	61, 830, 1445, 1544
CviAII	CATG	6 cut(s)	402, 638, 647, 978, 1340, 1677
CviQI	GTAC	4 cut(s)	61, 830, 1445, 1544
DdeI	CTNAG	7 cut(s)	120, 221, 480, 558, 834, 1154, 1525
DpnI	GATC	8 cut(s)	41, 438, 784, 932, 1175, 1486, 1530, 1726
DpnII	GATC	8 cut(s)	39, 436, 782, 930, 1173, 1484, 1528, 1724
DraI	TTTAAA	1 cut(s)	907
DraIII	CACNNNGTG	1 cut(s)	1706
Eam1104I	CTCTTC	2 cut(s)	1002, 1467
EarI	CTCTTC	2 cut(s)	1002, 1467
Eco130I	CCWWGG	3 cut(s)	623, 744, 853
Eco47I	GGWCC	2 cut(s)	653, 1336
Eco57I	CTGAAG	2 cut(s)	563, 759
Eco81I	CCTNAGG	1 cut(s)	480
Eco88I	CYCGRG	1 cut(s)	1869
EcoRI	GAATTC	1 cut(s)	314
EcoRII	CCWGG	1 cut(s)	680
EcoT14I	CCWWGG	3 cut(s)	623, 744, 853
ErhI	CCWWGG	3 cut(s)	623, 744, 853
FaeI	CATG	6 cut(s)	405, 641, 650, 981, 1343, 1680
FalI	AAGNNNNNCTT	2 cut(s)	1299, 1331
FatI	CATG	6 cut(s)	401, 637, 646, 977, 1339, 1676
FbaI	TGATCA	2 cut(s)	930, 1173
Fnu4HI	GCNGC	6 cut(s)	7, 303, 324, 393, 510, 1019
FokI	GGATG	4 cut(s)	356, 575, 786, 1418
Fsp4HI	GCNGC	6 cut(s)	7, 303, 324, 393, 510, 1019
FspBI	CTAG	6 cut(s)	299, 432, 716, 788, 813, 1793
GluI	GCNGC	6 cut(s)	7, 303, 324, 393, 510, 1019
GsuI	CTGGAG	4 cut(s)	447, 664, 1058, 1827
HaeIII	GGCC	2 cut(s)	287, 759
Hin1II	CATG	6 cut(s)	405, 641, 650, 981, 1343, 1680
HindIII	AAGCTT	2 cut(s)	26, 836
HphI	GGTGA	4 cut(s)	23, 196, 496, 506
Hpy166II	GTNNAC	4 cut(s)	63, 1336, 1445, 1709
Hpy8I	GTNNAC	4 cut(s)	63, 1336, 1445, 1709
Hpy99I	CGWCG	1 cut(s)	47
HpyAV	CCTTC	3 cut(s)	1058, 1271, 1390
HpyCH4III	ACNGT	5 cut(s)	35, 259, 619, 1284, 1467
HpyCH4IV	ACGT	1 cut(s)	532
HpyF10VI	GCNNNNNNNGC	5 cut(s)	139, 389, 428, 1018, 1370
HpyF3I	CTNAG	7 cut(s)	120, 221, 480, 558, 834, 1154, 1525
HpySE526I	ACGT	1 cut(s)	532
Hsp92II	CATG	6 cut(s)	405, 641, 650, 981, 1343, 1680
Ksp22I	TGATCA	2 cut(s)	930, 1173
Kzo9I	GATC	8 cut(s)	39, 436, 782, 930, 1173, 1484, 1528, 1724
LguI	GCTCTTC	1 cut(s)	1002
LmnI	GCTCC	6 cut(s)	428, 683, 859, 1288, 1680, 1775
Lsp1109I	GCAGC	2 cut(s)	18, 289
LweI	GCATC	6 cut(s)	289, 334, 655, 760, 805, 900
MaeI	CTAG	6 cut(s)	299, 432, 716, 788, 813, 1793
MaeII	ACGT	1 cut(s)	532
MaeIII	GTNAC	1 cut(s)	494
MalI	GATC	8 cut(s)	41, 438, 784, 932, 1175, 1486, 1530, 1726
MboI	GATC	8 cut(s)	39, 436, 782, 930, 1173, 1484, 1528, 1724
MboII	GAAGA	8 cut(s)	1019, 1064, 1107, 1281, 1307, 1484, 1835, 1847
MfeI	CAATTG	1 cut(s)	1433
MflI	RGATCY	2 cut(s)	782, 1528
MhlI	GDGCHC	1 cut(s)	1428
MlyI	GAGTC	3 cut(s)	274, 1235, 1796
MmeI	TCCRAC	4 cut(s)	1199, 1266, 1343, 1411
MroXI	GAANNNNTTC	1 cut(s)	1747
MseI	TTAA	9 cut(s)	233, 461, 600, 906, 1293, 1574, 1649, 1901, 1982
MslI	CAYNNNNRTG	1 cut(s)	342
MspR9I	CCNGG	1 cut(s)	682
MunI	CAATTG	1 cut(s)	1433
MvaI	CCWGG	1 cut(s)	682
MwoI	GCNNNNNNNGC	5 cut(s)	139, 389, 428, 1018, 1370
NdeII	GATC	8 cut(s)	39, 436, 782, 930, 1173, 1484, 1528, 1724
NlaIII	CATG	6 cut(s)	405, 641, 650, 981, 1343, 1680
NmuCI	GTSAC	1 cut(s)	494
PaeR7I	CTCGAG	1 cut(s)	1869
PciSI	GCTCTTC	1 cut(s)	1002
PdmI	GAANNNNTTC	1 cut(s)	1747
PflMI	CCANNNNNTGG	1 cut(s)	1706
PkrI	GCNGC	6 cut(s)	8, 304, 325, 394, 511, 1020
PleI	GAGTC	3 cut(s)	273, 1235, 1796
PpsI	GAGTC	3 cut(s)	273, 1235, 1796
Ppu21I	YACGTR	1 cut(s)	533
Psp6I	CCWGG	1 cut(s)	680
PspGI	CCWGG	1 cut(s)	680
PspPI	GGNCC	2 cut(s)	653, 1336
PstI	CTGCAG	1 cut(s)	1459
PsuI	RGATCY	2 cut(s)	782, 1528
RsaI	GTAC	4 cut(s)	62, 831, 1446, 1545
RsaNI	GTAC	4 cut(s)	61, 830, 1445, 1544
RseI	CAYNNNNRTG	1 cut(s)	342
SapI	GCTCTTC	1 cut(s)	1002
SaqAI	TTAA	9 cut(s)	233, 461, 600, 906, 1293, 1574, 1649, 1901, 1982
SatI	GCNGC	6 cut(s)	7, 303, 324, 393, 510, 1019
Sau3AI	GATC	8 cut(s)	39, 436, 782, 930, 1173, 1484, 1528, 1724
Sau96I	GGNCC	2 cut(s)	653, 1336
SchI	GAGTC	3 cut(s)	274, 1235, 1796
ScrFI	CCNGG	1 cut(s)	682
SduI	GDGCHC	1 cut(s)	1428
SfaNI	GCATC	6 cut(s)	289, 334, 655, 760, 805, 900
SfcI	CTRYAG	2 cut(s)	504, 1455
Sfr274I	CTCGAG	1 cut(s)	1869
SinI	GGWCC	2 cut(s)	653, 1336
SlaI	CTCGAG	1 cut(s)	1869
SmiMI	CAYNNNNRTG	1 cut(s)	342
SmlI	CTYRAG	1 cut(s)	1869
SmoI	CTYRAG	1 cut(s)	1869
SsiI	CCGC	5 cut(s)	323, 392, 509, 1018, 1978
SspMI	CTAG	6 cut(s)	299, 432, 716, 788, 813, 1793
StyD4I	CCNGG	1 cut(s)	680
StyI	CCWWGG	3 cut(s)	623, 744, 853
TaaI	ACNGT	5 cut(s)	35, 259, 619, 1284, 1467
TaiI	ACGT	1 cut(s)	535
TaqI	TCGA	9 cut(s)	42, 413, 750, 768, 1723, 1763, 1870, 1919, 2007
TatI	WGTACW	2 cut(s)	60, 1543
TauI	GCSGC	4 cut(s)	326, 395, 512, 1021
Tru1I	TTAA	9 cut(s)	233, 461, 600, 906, 1293, 1574, 1649, 1901, 1982
Tru9I	TTAA	9 cut(s)	233, 461, 600, 906, 1293, 1574, 1649, 1901, 1982
TscAI	CASTG	7 cut(s)	264, 344, 394, 624, 810, 1090, 1265
TseFI	GTSAC	1 cut(s)	494
TseI	GCWGC	2 cut(s)	6, 302
Tsp45I	GTSAC	1 cut(s)	494
TspGWI	ACGGA	1 cut(s)	44
TspRI	CASTG	7 cut(s)	264, 344, 394, 624, 810, 1090, 1265
Van91I	CCANNNNNTGG	1 cut(s)	1706
VpaK11BI	GGWCC	2 cut(s)	653, 1336
XapI	RAATTY	6 cut(s)	102, 314, 1222, 1694, 1876, 1915
XbaI	TCTAGA	2 cut(s)	787, 812
XcmI	CCANNNNNNNNNTGG	2 cut(s)	173, 1033
XhoI	CTCGAG	1 cut(s)	1869
XmnI	GAANNNNTTC	1 cut(s)	1747
XspI	CTAG	6 cut(s)	299, 432, 716, 788, 813, 1793

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.