Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0005021

Physical Location & Seq

Genomic Coordinates Forward (+)

17482379 .. 17485255

Gene Structure 2877 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G008130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1746 bp

ATGTGCAGCGATTCAAATCTGACGAAGCTCCACCGTCTGATCGACGATTCTCTCCGTCCGTACACAGAACCAGATGTCGTTTCGATAACGAAGGAGGGAGAAATTCTGGTCAGTCTCTCTCAGATTCTTCGGCAAGTGAAGCTCTGGATTGGAGAAGTTGATTCCGATTCTGATAATGGAGTGTTGATTGGATTGGAGTTTGAGAATGAGTGTATGTGTCTGAGTAAAATCTTAACTCACTTGATTGTTTTCCTAACAGTGGAGAGTCAATATGTGAAGCATCTGGCCTGCAATGTTCTAGCTGCTGTCTCCGAATTCGTGGCGGCTTCGGGAAGCCACTGGGATGCCTTTATTCGTTTGTTGTGTGATTGTATGGATTTGGCAATCACTGCGGCAGTTTCATGTTCTACATCGACTTTGGCAACTGGAGCTAGTGATCTTTGTTCTAGTTCATTGAGTTTAATTCTCGTGCTGAAACCTAAGGTGAAAAATGGTGACTGGTCTGTAGCGGCTGGTGTTGTTTGGGTGCTACGTGATATACTGAAGTATTTGAAGTCTGAGGATGATGACGAGCTTGTTGAAGTGTTCATTGAGGCTGTTAATTCTTTTCTTTCAACAGTGCCTTGGGGATTTATTACCTGGGAGTATGAGATATTTGTTCTAATGATCAGGCTCATTGTCCAAACTTGTCCAGAATCCTCAATTCTTGTTTCGTGGTTGCAACTTATCCATTATTACTTTGAAGAGCTTTTGCGGCAACCCATTTCTACTCTGGAGTGTAATCAGGAAGATTGTTTGGAAGGCTCTCCATTTCTATCCAGTGTTTCTGATTCAGAAGTAAATAGTCTGTCTTCTCGCCATCTGCAAAGACAGGCTGTGTTCCTTTTTCTGAGGTGTTCTTTTAGTTTGATTAACTCAAATGGAGGCACTAACAGAAAATGTGCTTGTGCAAGTTGGAATTTATGCTTGGACTATGACTCAAATGCAGAGTTGCAGTGTTGTGGAAGAAAGGAAGGACTATTGGAGCTTAATAACTGGCTTCAAGGACATCTTCCAACTGATATGTTTGTGGACCATGAAATGTATTTTGAAAAATGTGCAGACTTTGCCAAATCCTTCCTCCAACTACATATCAAAGAGGATGATGTATTATTCAGAGTGCTCTTGCAATTGCTTTGTGTACCTTGTCCTGCAGAGAAACAGTACGGAATTAATATCCTAGATTCAAAGGGCAATGTGCTTTTTTTTGTTTCAGATCTTTTCAATCCTGTACTCTTATTCCATCTATTTCTTGTAGAGTTAAGCTATGACCATCAGGTGCTTCTTGATTACCTTATTACAAAAGATACTGGAATCAGTTGTGCAGAATATCTTTTAAGGTGCTTGCGTAAAGTGTGTGATTCATGGAGCTTATTTGTGGAATTTCCACCGAGTGGACAAGCTATTAATCGATCATCTTGCAAGAAAAGAAAAGTTTCATTGAATGGGTCGAGTTTCTGTGGAGCAGATTTGTTTGCGCTAGTGAAAGACTCTGGAGGTTTGTTTCTTGAAGATGAATGTGACGATGAAAACAAATATGATTTCAAGCACACTCGAGAGAATTTCCAAAAAGCCAAAGAGTGCTTAATTTCGTTGAAAAATTCGATTGAAAGTCTCCACCAAAAGAATCTATTTCCCTACAATCCTAATGCTCTTTTGAACCGCTTAATGAGGTTTCAGGAACTCTGTTTCGAGGAGGAAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LINES_C LINES_N

Protein Analysis

581

Amino Acids

65.82

Weight (kDa)

4.86

Isoelectric Point (pI)

47.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LINES_N	PF14694	354 - 474	1.9e-07	Lines N-terminus
LINES_C	PF14695	538 - 574	3.5e-15	Lines C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005021)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50430 AT3G50430
fragaria_vesca	FvH4_1g14850
malus_domestica	MD06G1092200.v1.1 MD15G1276100.v1.1
prunus_persica	Prupe.5G239300_v2.0.a1 Prupe.7G141900_v2.0.a1 Prupe.7G141900_v2.0.a1
pyrus_communis	pycom06g08810 pycom15g23900 pycom15g23910
rosa_chinensis	RchiOBHm_Chr1g0329901 RchiOBHm_Chr2g0103811
rosa_laevigata	RLG00000017265 RLG00000029854
rosa_multiflora	Rmu_sc0000112.1_g000009 Rmu_sc0001286.1_g000019
rosa_roxburghii	Rroxscaffold_2G00139340 Rroxscaffold_4G00320520
rosa_rugosa	Rorug01G0084200 Rorug02G0117400
rosa_samantha	Rh1BG081300 Rh1DG105200 Rh2AG166500 Rh2CG172400
rosa_wichuraiana	Rw0G006900 Rw1G008080 Rw1G008130 Rw2G013040 Rw4G001250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1433
AciI	CCGC	5 cut(s)	323, 392, 509, 754, 1702
AcsI	RAATTY	6 cut(s)	102, 314, 958, 1421, 1600, 1639
AcuI	CTGAAG	1 cut(s)	563
AdeI	CACNNNGTG	1 cut(s)	1433
AfaI	GTAC	4 cut(s)	62, 1182, 1205, 1272
AfiI	CCNNNNNNNGG	2 cut(s)	259, 1433
AjnI	CCWGG	1 cut(s)	638
AjuI	GAANNNNNNNTTGG	2 cut(s)	950, 982
Alw21I	GWGCWC	1 cut(s)	1164
Alw26I	GTCTC	3 cut(s)	119, 313, 1658
Ama87I	CYCGRG	1 cut(s)	1593
AoxI	GGCC	1 cut(s)	285
ApeKI	GCWGC	2 cut(s)	6, 302
ApoI	RAATTY	6 cut(s)	102, 314, 958, 1421, 1600, 1639
AseI	ATTAAT	2 cut(s)	1212, 1446
Asp700I	GAANNNNTTC	1 cut(s)	1474
AspLEI	GCGC	1 cut(s)	1519
AspS9I	GGNCC	1 cut(s)	1072
AsuHPI	GGTGA	2 cut(s)	496, 506
AvaI	CYCGRG	1 cut(s)	1593
AvaII	GGWCC	1 cut(s)	1072
AxyI	CCTNAGG	1 cut(s)	480
BauI	CACGAG	1 cut(s)	467
BbsI	GAAGAC	1 cut(s)	843
Bbv12I	GWGCWC	1 cut(s)	1164
BbvI	GCAGC	2 cut(s)	18, 289
BccI	CCATC	3 cut(s)	867, 1290, 1320
BcgI	CGANNNNNNTGC	2 cut(s)	1440, 1474
BciT130I	CCWGG	1 cut(s)	640
BclI	TGATCA	1 cut(s)	666
BcoDI	GTCTC	3 cut(s)	119, 313, 1658
BfaI	CTAG	5 cut(s)	299, 432, 447, 1220, 1520
BfmI	CTRYAG	2 cut(s)	504, 1191
BglII	AGATCT	1 cut(s)	1255
BisI	GCNGC	6 cut(s)	7, 303, 324, 393, 510, 755
BlsI	GCNGC	6 cut(s)	8, 304, 325, 394, 511, 756
Bme1390I	CCNGG	1 cut(s)	640
Bme18I	GGWCC	1 cut(s)	1072
BmeT110I	CYCGRG	1 cut(s)	1593
BmgT120I	GGNCC	1 cut(s)	1072
BmrFI	CCNGG	1 cut(s)	640
BmrI	ACTGGG	1 cut(s)	349
BmsI	GCATC	2 cut(s)	289, 334
BmuI	ACTGGG	1 cut(s)	349
BpiI	GAAGAC	1 cut(s)	843
BpmI	CTGGAG	3 cut(s)	447, 794, 1554
Bsa29I	ATCGAT	1 cut(s)	1450
BsaAI	YACGTR	1 cut(s)	533
BsaBI	GATNNNNATC	1 cut(s)	15
BsaJI	CCNNGG	2 cut(s)	623, 639
Bsc4I	CCNNNNNNNGG	2 cut(s)	259, 1433
Bse1I	ACTGG	6 cut(s)	344, 430, 503, 819, 1040, 1354
Bse21I	CCTNAGG	1 cut(s)	480
Bse3DI	GCAATG	2 cut(s)	298, 1240
Bse8I	GATNNNNATC	1 cut(s)	15
BseBI	CCWGG	1 cut(s)	640
BseCI	ATCGAT	1 cut(s)	1450
BseDI	CCNNGG	2 cut(s)	623, 639
BseGI	GGATG	3 cut(s)	349, 568, 1147
BseJI	GATNNNNATC	1 cut(s)	15
BseLI	CCNNNNNNNGG	2 cut(s)	259, 1433
BseMI	GCAATG	2 cut(s)	298, 1240
BseMII	CTCAG	4 cut(s)	134, 212, 549, 881
BseNI	ACTGG	6 cut(s)	344, 430, 503, 819, 1040, 1354
BseXI	GCAGC	2 cut(s)	18, 289
BsgI	GTGCAG	3 cut(s)	25, 1119, 1383
BshFI	GGCC	1 cut(s)	287
BshVI	ATCGAT	1 cut(s)	1450
BsiHKAI	GWGCWC	1 cut(s)	1164
BsiHKCI	CYCGRG	1 cut(s)	1593
BslI	CCNNNNNNNGG	2 cut(s)	259, 1433
BsmAI	GTCTC	3 cut(s)	119, 313, 1658
BsnI	GGCC	1 cut(s)	287
BsoBI	CYCGRG	1 cut(s)	1593
Bsp1286I	GDGCHC	1 cut(s)	1164
Bsp143I	GATC	5 cut(s)	39, 436, 666, 1255, 1451
BspACI	CCGC	5 cut(s)	323, 392, 509, 754, 1702
BspANI	GGCC	1 cut(s)	287
BspCNI	CTCAG	4 cut(s)	133, 213, 550, 882
BspDI	ATCGAT	1 cut(s)	1450
BspMAI	CTGCAG	1 cut(s)	1195
BspQI	GCTCTTC	1 cut(s)	738
BsrDI	GCAATG	2 cut(s)	298, 1240
BsrI	ACTGG	6 cut(s)	344, 430, 503, 819, 1040, 1354
BssECI	CCNNGG	2 cut(s)	623, 639
BssMI	GATC	5 cut(s)	39, 436, 666, 1255, 1451
BssSI	CACGAG	1 cut(s)	467
BssT1I	CCWWGG	1 cut(s)	623
Bst2BI	CACGAG	1 cut(s)	467
Bst2UI	CCWGG	1 cut(s)	640
Bst4CI	ACNGT	4 cut(s)	35, 259, 619, 1203
Bst6I	CTCTTC	1 cut(s)	738
BstAPI	GCANNNNNTGC	2 cut(s)	389, 1106
BstBAI	YACGTR	1 cut(s)	533
BstC8I	GCNNGC	2 cut(s)	289, 1385
BstDEI	CTNAG	5 cut(s)	120, 221, 480, 558, 890
BstF5I	GGATG	3 cut(s)	349, 568, 1147
BstHHI	GCGC	1 cut(s)	1519
BstKTI	GATC	5 cut(s)	42, 439, 669, 1258, 1454
BstMAI	GTCTC	3 cut(s)	119, 313, 1658
BstMBI	GATC	5 cut(s)	39, 436, 666, 1255, 1451
BstMWI	GCNNNNNNNGC	5 cut(s)	139, 389, 428, 754, 1106
BstNI	CCWGG	1 cut(s)	640
BstSCI	CCNGG	1 cut(s)	638
BstSFI	CTRYAG	2 cut(s)	504, 1191
BstV1I	GCAGC	2 cut(s)	18, 289
BstV2I	GAAGAC	1 cut(s)	843
BstX2I	RGATCY	1 cut(s)	1255
BstYI	RGATCY	1 cut(s)	1255
Bsu15I	ATCGAT	1 cut(s)	1450
Bsu36I	CCTNAGG	1 cut(s)	480
BsuRI	GGCC	1 cut(s)	287
BsuTUI	ATCGAT	1 cut(s)	1450
BtsCI	GGATG	3 cut(s)	349, 568, 1147
BtsI	GCAGTG	2 cut(s)	387, 1001
BtsIMutI	CAGTG	6 cut(s)	264, 337, 387, 624, 826, 1001
Cac8I	GCNNGC	2 cut(s)	289, 1385
CfoI	GCGC	1 cut(s)	1519
Cfr13I	GGNCC	1 cut(s)	1072
ClaI	ATCGAT	1 cut(s)	1450
Csp6I	GTAC	4 cut(s)	61, 1181, 1204, 1271
CviAII	CATG	3 cut(s)	402, 1076, 1404
CviQI	GTAC	4 cut(s)	61, 1181, 1204, 1271
DdeI	CTNAG	5 cut(s)	120, 221, 480, 558, 890
DpnI	GATC	5 cut(s)	41, 438, 668, 1257, 1453
DpnII	GATC	5 cut(s)	39, 436, 666, 1255, 1451
DraIII	CACNNNGTG	1 cut(s)	1433
Eam1104I	CTCTTC	1 cut(s)	738
EarI	CTCTTC	1 cut(s)	738
Eco130I	CCWWGG	1 cut(s)	623
Eco47I	GGWCC	1 cut(s)	1072
Eco57I	CTGAAG	1 cut(s)	563
Eco81I	CCTNAGG	1 cut(s)	480
Eco88I	CYCGRG	1 cut(s)	1593
EcoRI	GAATTC	1 cut(s)	314
EcoRII	CCWGG	1 cut(s)	638
EcoT14I	CCWWGG	1 cut(s)	623
ErhI	CCWWGG	1 cut(s)	623
FaeI	CATG	3 cut(s)	405, 1079, 1407
FalI	AAGNNNNNCTT	2 cut(s)	1035, 1067
FatI	CATG	3 cut(s)	401, 1075, 1403
FbaI	TGATCA	1 cut(s)	666
Fnu4HI	GCNGC	6 cut(s)	7, 303, 324, 393, 510, 755
FokI	GGATG	3 cut(s)	356, 575, 1154
Fsp4HI	GCNGC	6 cut(s)	7, 303, 324, 393, 510, 755
FspBI	CTAG	5 cut(s)	299, 432, 447, 1220, 1520
GlaI	GCGC	1 cut(s)	1518
GluI	GCNGC	6 cut(s)	7, 303, 324, 393, 510, 755
GsuI	CTGGAG	3 cut(s)	447, 794, 1554
HaeIII	GGCC	1 cut(s)	287
HhaI	GCGC	1 cut(s)	1519
Hin1II	CATG	3 cut(s)	405, 1079, 1407
Hin6I	GCGC	1 cut(s)	1517
HinP1I	GCGC	1 cut(s)	1517
HphI	GGTGA	2 cut(s)	496, 506
Hpy166II	GTNNAC	4 cut(s)	63, 1072, 1181, 1436
Hpy8I	GTNNAC	4 cut(s)	63, 1072, 1181, 1436
Hpy99I	CGWCG	1 cut(s)	47
HpyAV	CCTTC	4 cut(s)	85, 794, 1007, 1126
HpyCH4III	ACNGT	4 cut(s)	35, 259, 619, 1203
HpyCH4IV	ACGT	1 cut(s)	532
HpyF10VI	GCNNNNNNNGC	5 cut(s)	139, 389, 428, 754, 1106
HpyF3I	CTNAG	5 cut(s)	120, 221, 480, 558, 890
HpySE526I	ACGT	1 cut(s)	532
Hsp92II	CATG	3 cut(s)	405, 1079, 1407
HspAI	GCGC	1 cut(s)	1517
Ksp22I	TGATCA	1 cut(s)	666
Kzo9I	GATC	5 cut(s)	39, 436, 666, 1255, 1451
LguI	GCTCTTC	1 cut(s)	738
LmnI	GCTCC	5 cut(s)	33, 428, 1024, 1407, 1502
Lsp1109I	GCAGC	2 cut(s)	18, 289
LweI	GCATC	2 cut(s)	289, 334
MaeI	CTAG	5 cut(s)	299, 432, 447, 1220, 1520
MaeII	ACGT	1 cut(s)	532
MaeIII	GTNAC	2 cut(s)	494, 1559
MalI	GATC	5 cut(s)	41, 438, 668, 1257, 1453
MboI	GATC	5 cut(s)	39, 436, 666, 1255, 1451
MboII	GAAGA	7 cut(s)	119, 755, 800, 843, 1017, 1043, 1562
MfeI	CAATTG	1 cut(s)	1169
MflI	RGATCY	1 cut(s)	1255
MhlI	GDGCHC	1 cut(s)	1164
MlyI	GAGTC	3 cut(s)	274, 971, 1523
MmeI	TCCRAC	3 cut(s)	935, 1079, 1147
MroXI	GAANNNNTTC	1 cut(s)	1474
MslI	CAYNNNNRTG	1 cut(s)	342
MspR9I	CCNGG	1 cut(s)	640
MunI	CAATTG	1 cut(s)	1169
MvaI	CCWGG	1 cut(s)	640
MwoI	GCNNNNNNNGC	5 cut(s)	139, 389, 428, 754, 1106
NdeII	GATC	5 cut(s)	39, 436, 666, 1255, 1451
NlaIII	CATG	3 cut(s)	405, 1079, 1407
NmuCI	GTSAC	2 cut(s)	494, 1559
PaeR7I	CTCGAG	1 cut(s)	1593
PciSI	GCTCTTC	1 cut(s)	738
PdmI	GAANNNNTTC	1 cut(s)	1474
PflMI	CCANNNNNTGG	1 cut(s)	1433
PkrI	GCNGC	6 cut(s)	8, 304, 325, 394, 511, 756
PleI	GAGTC	3 cut(s)	273, 971, 1523
PpsI	GAGTC	3 cut(s)	273, 971, 1523
Ppu21I	YACGTR	1 cut(s)	533
PshBI	ATTAAT	2 cut(s)	1212, 1446
Psp6I	CCWGG	1 cut(s)	638
PspGI	CCWGG	1 cut(s)	638
PspPI	GGNCC	1 cut(s)	1072
PstI	CTGCAG	1 cut(s)	1195
PsuI	RGATCY	1 cut(s)	1255
RsaI	GTAC	4 cut(s)	62, 1182, 1205, 1272
RsaNI	GTAC	4 cut(s)	61, 1181, 1204, 1271
RseI	CAYNNNNRTG	1 cut(s)	342
SapI	GCTCTTC	1 cut(s)	738
SatI	GCNGC	6 cut(s)	7, 303, 324, 393, 510, 755
Sau3AI	GATC	5 cut(s)	39, 436, 666, 1255, 1451
Sau96I	GGNCC	1 cut(s)	1072
SchI	GAGTC	3 cut(s)	274, 971, 1523
ScrFI	CCNGG	1 cut(s)	640
SduI	GDGCHC	1 cut(s)	1164
SfaNI	GCATC	2 cut(s)	289, 334
SfcI	CTRYAG	2 cut(s)	504, 1191
Sfr274I	CTCGAG	1 cut(s)	1593
SinI	GGWCC	1 cut(s)	1072
SlaI	CTCGAG	1 cut(s)	1593
SmiMI	CAYNNNNRTG	1 cut(s)	342
SmlI	CTYRAG	1 cut(s)	1593
SmoI	CTYRAG	1 cut(s)	1593
SsiI	CCGC	5 cut(s)	323, 392, 509, 754, 1702
SspMI	CTAG	5 cut(s)	299, 432, 447, 1220, 1520
StyD4I	CCNGG	1 cut(s)	638
StyI	CCWWGG	1 cut(s)	623
TaaI	ACNGT	4 cut(s)	35, 259, 619, 1203
TaiI	ACGT	1 cut(s)	535
TaqI	TCGA	8 cut(s)	42, 83, 413, 1450, 1490, 1594, 1643, 1731
TatI	WGTACW	1 cut(s)	1270
TauI	GCSGC	4 cut(s)	326, 395, 512, 757
TscAI	CASTG	6 cut(s)	264, 344, 394, 624, 826, 1001
TseFI	GTSAC	2 cut(s)	494, 1559
TseI	GCWGC	2 cut(s)	6, 302
Tsp45I	GTSAC	2 cut(s)	494, 1559
TspDTI	ATGAA	8 cut(s)	390, 441, 577, 1092, 1392, 1467, 1569, 1581
TspGWI	ACGGA	3 cut(s)	44, 48, 1221
TspRI	CASTG	6 cut(s)	264, 344, 394, 624, 826, 1001
Van91I	CCANNNNNTGG	1 cut(s)	1433
VpaK11BI	GGWCC	1 cut(s)	1072
VspI	ATTAAT	2 cut(s)	1212, 1446
XapI	RAATTY	6 cut(s)	102, 314, 958, 1421, 1600, 1639
XcmI	CCANNNNNNNNNTGG	1 cut(s)	769
XhoI	CTCGAG	1 cut(s)	1593
XmnI	GAANNNNTTC	1 cut(s)	1474
XspI	CTAG	5 cut(s)	299, 432, 447, 1220, 1520

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.