Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0005021

Physical Location & Seq

Genomic Coordinates Forward (+)

18026258 .. 18027415

Gene Structure 1158 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g23900.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGTGCGGTGATTCGAAGCTCTCGCGGCTGTGCCGTTTGGACCACGATTTTCTCCGTCCGTACACCGAATCCGGCGTCGTTTTGGTAGCCCAAGAGAGGGAAGTTCTGGTCACTCTCTCTCAGGTTCTTCGACAAGTCAAGCTCTGGACCCAAGCACTTGATTCCGACTCTGAAAATGTCAGTTTCTCTATCTCTCTCATTCTAGAGACTGCAAATTTGACTTGCTCTGATAAAAAGGCTCAAACTTTCCTTGATCAGGGAGTGGCGATAGGATTGGATTGTGAGAGTGATTGTATGTGTCTGACTAAAATCGTAACTCACTTGATGGTTTTGCTGACAGTGGAGAGTCAATATGTCAAGCATCTGGCGTGCAATGTTCTTGTTGCTGTGTCGAAATTCCTTGTTGATTCGGGGAGCAACTGGGAGGGTTTTATCCGTTTGTTGTGTGTTTGTATGAATTTGGCGATCACTGTGGCGGTGTCTTGTTCTTCATCATGGTCGGTGGATGGAGCTGATGATCTTCATTCTTGTTCGTCGAGGTTGATTCTTGTGTTAAAGCCTAAGCTGGAAAATGCTGACTGGTCTATTGCGGCTGCTGTTGTTCGGGTTTTACGTGATATAAGGAAATATTTGAAGTCAGAAGACGATGATGAACTTATTGAAGCATTCTTTGATTCTATCAATTCCGTTCTTTCAACTGTGCCATGGAATTTGCTAGATGAGATTCAAGTTGGTGCAAACCCTGATGCTCAGAAAGGGTCCAGAGCTGATGCTTTGTTTCAAAGATCCTTGTTTCTAGGAAATTTGATTCAGTTTCTCTGTTCCATGGTTGAGCAAAGTGGTTCTGCGGAAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LINES_C LINES_N

Protein Analysis

286

Amino Acids

31.39

Weight (kDa)

4.72

Isoelectric Point (pI)

33.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005021)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50430 AT3G50430
fragaria_vesca	FvH4_1g14850
malus_domestica	MD06G1092200.v1.1 MD15G1276100.v1.1
prunus_persica	Prupe.5G239300_v2.0.a1 Prupe.7G141900_v2.0.a1 Prupe.7G141900_v2.0.a1
pyrus_communis	pycom06g08810 pycom15g23900 pycom15g23910
rosa_chinensis	RchiOBHm_Chr1g0329901 RchiOBHm_Chr2g0103811
rosa_laevigata	RLG00000017265 RLG00000029854
rosa_multiflora	Rmu_sc0000112.1_g000009 Rmu_sc0001286.1_g000019
rosa_roxburghii	Rroxscaffold_2G00139340 Rroxscaffold_4G00320520
rosa_rugosa	Rorug01G0084200 Rorug02G0117400
rosa_samantha	Rh1BG081300 Rh1DG105200 Rh2AG166500 Rh2CG172400
rosa_wichuraiana	Rw0G006900 Rw1G008080 Rw1G008130 Rw2G013040 Rw4G001250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	25
AciI	CCGC	5 cut(s)	6, 25, 476, 590, 848
AclWI	GGATC	1 cut(s)	780
AcsI	RAATTY	5 cut(s)	214, 395, 457, 709, 802
AcyI	GRCGYC	1 cut(s)	75
AfaI	GTAC	1 cut(s)	62
AfiI	CCNNNNNNNGG	3 cut(s)	96, 97, 256
AgsI	TTSAA	5 cut(s)	634, 662, 696, 728, 782
AluBI	AGCT	6 cut(s)	19, 142, 512, 565, 767, 854
AluI	AGCT	6 cut(s)	19, 142, 512, 565, 767, 854
Alw26I	GTCTC	1 cut(s)	200
AlwI	GGATC	1 cut(s)	780
ApeKI	GCWGC	1 cut(s)	593
ApoI	RAATTY	5 cut(s)	214, 395, 457, 709, 802
ArsI	GACNNNNNNTTYG	4 cut(s)	60, 92, 199, 231
AspS9I	GGNCC	3 cut(s)	40, 147, 759
AsuHPI	GGTGA	1 cut(s)	20
AsuII	TTCGAA	1 cut(s)	14
AvaII	GGWCC	3 cut(s)	40, 147, 759
BbsI	GAAGAC	1 cut(s)	648
BbvI	GCAGC	1 cut(s)	580
BccI	CCATC	2 cut(s)	319, 500
BceAI	ACGGC	1 cut(s)	18
BclI	TGATCA	1 cut(s)	253
BcoDI	GTCTC	1 cut(s)	200
BfaI	CTAG	3 cut(s)	203, 716, 797
BisI	GCNGC	3 cut(s)	26, 591, 594
BlsI	GCNGC	3 cut(s)	27, 592, 595
Bme18I	GGWCC	3 cut(s)	40, 147, 759
BmgT120I	GGNCC	3 cut(s)	40, 147, 759
BmiI	GGNNCC	2 cut(s)	149, 760
BmrI	ACTGGG	1 cut(s)	430
BmsI	GCATC	3 cut(s)	370, 736, 760
BmuI	ACTGGG	1 cut(s)	430
BpiI	GAAGAC	1 cut(s)	648
Bpu10I	CCTNAGC	1 cut(s)	561
Bpu14I	TTCGAA	1 cut(s)	14
BsaAI	YACGTR	1 cut(s)	614
BsaHI	GRCGYC	1 cut(s)	75
BsaJI	CCNNGG	2 cut(s)	704, 825
Bsc4I	CCNNNNNNNGG	3 cut(s)	96, 97, 256
Bse1I	ACTGG	2 cut(s)	425, 584
Bse3DI	GCAATG	1 cut(s)	379
BseDI	CCNNGG	2 cut(s)	704, 825
BseGI	GGATG	1 cut(s)	511
BseLI	CCNNNNNNNGG	3 cut(s)	96, 97, 256
BseMI	GCAATG	1 cut(s)	379
BseMII	CTCAG	2 cut(s)	134, 764
BseNI	ACTGG	2 cut(s)	425, 584
BseXI	GCAGC	1 cut(s)	580
Bsh1236I	CGCG	1 cut(s)	25
BsiSI	CCGG	1 cut(s)	72
BslI	CCNNNNNNNGG	3 cut(s)	96, 97, 256
BsmAI	GTCTC	1 cut(s)	200
BsmI	GAATGC	1 cut(s)	665
Bsp119I	TTCGAA	1 cut(s)	14
Bsp143I	GATC	4 cut(s)	253, 465, 517, 785
Bsp19I	CCATGG	2 cut(s)	704, 825
BspACI	CCGC	5 cut(s)	6, 25, 476, 590, 848
BspCNI	CTCAG	2 cut(s)	133, 763
BspFNI	CGCG	1 cut(s)	25
BspLI	GGNNCC	2 cut(s)	149, 760
BspPI	GGATC	1 cut(s)	780
BspT104I	TTCGAA	1 cut(s)	14
BsrDI	GCAATG	1 cut(s)	379
BsrI	ACTGG	2 cut(s)	425, 584
BssECI	CCNNGG	2 cut(s)	704, 825
BssMI	GATC	4 cut(s)	253, 465, 517, 785
BssNI	GRCGYC	1 cut(s)	75
BssT1I	CCWWGG	2 cut(s)	704, 825
Bst4CI	ACNGT	3 cut(s)	340, 472, 700
BstACI	GRCGYC	1 cut(s)	75
BstBAI	YACGTR	1 cut(s)	614
BstBI	TTCGAA	1 cut(s)	14
BstC8I	GCNNGC	1 cut(s)	370
BstDEI	CTNAG	3 cut(s)	120, 561, 750
BstDSI	CCRYGG	2 cut(s)	704, 825
BstENI	CCTNNNNNAGG	1 cut(s)	254
BstF5I	GGATG	1 cut(s)	511
BstFNI	CGCG	1 cut(s)	25
BstKTI	GATC	4 cut(s)	256, 468, 520, 788
BstMAI	GTCTC	1 cut(s)	200
BstMBI	GATC	4 cut(s)	253, 465, 517, 785
BstMWI	GCNNNNNNNGC	1 cut(s)	25
BstUI	CGCG	1 cut(s)	25
BstV1I	GCAGC	1 cut(s)	580
BstV2I	GAAGAC	1 cut(s)	648
BstX2I	RGATCY	1 cut(s)	785
BstYI	RGATCY	1 cut(s)	785
BtgI	CCRYGG	2 cut(s)	704, 825
BtsCI	GGATG	1 cut(s)	511
BtsIMutI	CAGTG	2 cut(s)	345, 468
Cac8I	GCNNGC	1 cut(s)	370
Cfr13I	GGNCC	3 cut(s)	40, 147, 759
CseI	GACGC	1 cut(s)	64
Csp6I	GTAC	1 cut(s)	61
CviAII	CATG	3 cut(s)	495, 705, 826
CviQI	GTAC	1 cut(s)	61
DdeI	CTNAG	3 cut(s)	120, 561, 750
DpnI	GATC	4 cut(s)	255, 467, 519, 787
DpnII	GATC	4 cut(s)	253, 465, 517, 785
Eco130I	CCWWGG	2 cut(s)	704, 825
Eco47I	GGWCC	3 cut(s)	40, 147, 759
EcoNI	CCTNNNNNAGG	1 cut(s)	254
EcoT14I	CCWWGG	2 cut(s)	704, 825
ErhI	CCWWGG	2 cut(s)	704, 825
FaeI	CATG	3 cut(s)	498, 708, 829
FaiI	YATR	7 cut(s)	296, 354, 455, 496, 620, 706, 827
FatI	CATG	3 cut(s)	494, 704, 825
FbaI	TGATCA	1 cut(s)	253
Fnu4HI	GCNGC	3 cut(s)	26, 591, 594
FokI	GGATG	1 cut(s)	518
Fsp4HI	GCNGC	3 cut(s)	26, 591, 594
FspBI	CTAG	3 cut(s)	203, 716, 797
GluI	GCNGC	3 cut(s)	26, 591, 594
HapII	CCGG	1 cut(s)	72
HgaI	GACGC	1 cut(s)	64
Hin1I	GRCGYC	1 cut(s)	75
Hin1II	CATG	3 cut(s)	498, 708, 829
HindIII	AAGCTT	1 cut(s)	852
HpaII	CCGG	1 cut(s)	72
HphI	GGTGA	1 cut(s)	20
Hpy166II	GTNNAC	1 cut(s)	63
Hpy188I	TCNGA	6 cut(s)	166, 172, 229, 303, 640, 753
Hpy188III	TCNNGA	3 cut(s)	145, 203, 762
Hpy8I	GTNNAC	1 cut(s)	63
Hpy99I	CGWCG	2 cut(s)	80, 538
HpyCH4III	ACNGT	3 cut(s)	340, 472, 700
HpyCH4IV	ACGT	1 cut(s)	613
HpyCH4V	TGCA	3 cut(s)	212, 372, 737
HpyF10VI	GCNNNNNNNGC	1 cut(s)	25
HpyF3I	CTNAG	3 cut(s)	120, 561, 750
HpySE526I	ACGT	1 cut(s)	613
Hsp92I	GRCGYC	1 cut(s)	75
Hsp92II	CATG	3 cut(s)	498, 708, 829
Ksp22I	TGATCA	1 cut(s)	253
Kzo9I	GATC	4 cut(s)	253, 465, 517, 785
LmnI	GCTCC	2 cut(s)	414, 509
Lsp1109I	GCAGC	1 cut(s)	580
LweI	GCATC	3 cut(s)	370, 736, 760
MaeI	CTAG	3 cut(s)	203, 716, 797
MaeII	ACGT	1 cut(s)	613
MaeIII	GTNAC	2 cut(s)	109, 313
MalI	GATC	4 cut(s)	255, 467, 519, 787
MboI	GATC	4 cut(s)	253, 465, 517, 785
MboII	GAAGA	4 cut(s)	119, 480, 512, 653
MflI	RGATCY	1 cut(s)	785
MluCI	AATT	6 cut(s)	214, 395, 457, 682, 709, 802
MlyI	GAGTC	2 cut(s)	161, 355
MmeI	TCCRAC	1 cut(s)	189
MnlI	CCTC	3 cut(s)	90, 418, 531
MseI	TTAA	2 cut(s)	554, 856
MspI	CCGG	1 cut(s)	72
Mva1269I	GAATGC	1 cut(s)	665
MvnI	CGCG	1 cut(s)	25
MwoI	GCNNNNNNNGC	1 cut(s)	25
NcoI	CCATGG	2 cut(s)	704, 825
NdeII	GATC	4 cut(s)	253, 465, 517, 785
NlaIII	CATG	3 cut(s)	498, 708, 829
NlaIV	GGNNCC	2 cut(s)	149, 760
NmuCI	GTSAC	1 cut(s)	109
NspV	TTCGAA	1 cut(s)	14
PcsI	WCGNNNNNNNCGW	1 cut(s)	610
PctI	GAATGC	1 cut(s)	665
PfeI	GAWTC	8 cut(s)	11, 68, 161, 407, 544, 674, 724, 808
PkrI	GCNGC	3 cut(s)	27, 592, 595
PleI	GAGTC	2 cut(s)	161, 354
PpsI	GAGTC	2 cut(s)	161, 354
Ppu21I	YACGTR	1 cut(s)	614
PspN4I	GGNNCC	2 cut(s)	149, 760
PspPI	GGNCC	3 cut(s)	40, 147, 759
PsuI	RGATCY	1 cut(s)	785
RsaI	GTAC	1 cut(s)	62
RsaNI	GTAC	1 cut(s)	61
SaqAI	TTAA	2 cut(s)	554, 856
SatI	GCNGC	3 cut(s)	26, 591, 594
Sau3AI	GATC	4 cut(s)	253, 465, 517, 785
Sau96I	GGNCC	3 cut(s)	40, 147, 759
SchI	GAGTC	2 cut(s)	161, 355
SetI	ASST	9 cut(s)	21, 126, 144, 514, 542, 567, 616, 769, 856
SfaNI	GCATC	3 cut(s)	370, 736, 760
SfuI	TTCGAA	1 cut(s)	14
SinI	GGWCC	3 cut(s)	40, 147, 759
Sse9I	AATT	6 cut(s)	214, 395, 457, 682, 709, 802
SsiI	CCGC	5 cut(s)	6, 25, 476, 590, 848
SspI	AATATT	1 cut(s)	629
SspMI	CTAG	3 cut(s)	203, 716, 797
StyI	CCWWGG	2 cut(s)	704, 825
TaaI	ACNGT	3 cut(s)	340, 472, 700
TaiI	ACGT	1 cut(s)	616
TaqI	TCGA	4 cut(s)	14, 130, 392, 536
TasI	AATT	6 cut(s)	214, 395, 457, 682, 709, 802
TauI	GCSGC	2 cut(s)	28, 593
TfiI	GAWTC	8 cut(s)	11, 68, 161, 407, 544, 674, 724, 808
Tru1I	TTAA	2 cut(s)	554, 856
Tru9I	TTAA	2 cut(s)	554, 856
TscAI	CASTG	2 cut(s)	345, 475
TseFI	GTSAC	1 cut(s)	109
TseI	GCWGC	1 cut(s)	593
Tsp45I	GTSAC	1 cut(s)	109
TspDTI	ATGAA	4 cut(s)	470, 480, 512, 666
TspGWI	ACGGA	4 cut(s)	44, 48, 425, 676
TspRI	CASTG	2 cut(s)	345, 475
VpaK11BI	GGWCC	3 cut(s)	40, 147, 759
XagI	CCTNNNNNAGG	1 cut(s)	254
XapI	RAATTY	5 cut(s)	214, 395, 457, 709, 802
XbaI	TCTAGA	1 cut(s)	202
XspI	CTAG	3 cut(s)	203, 716, 797

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.