isoform X1
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G50430 AT3G50430 |
| fragaria_vesca | FvH4_1g14850 |
| malus_domestica | MD06G1092200.v1.1 MD15G1276100.v1.1 |
| prunus_persica | Prupe.5G239300_v2.0.a1 Prupe.7G141900_v2.0.a1 Prupe.7G141900_v2.0.a1 |
| pyrus_communis | pycom06g08810 pycom15g23900 pycom15g23910 |
| rosa_chinensis | RchiOBHm_Chr1g0329901 RchiOBHm_Chr2g0103811 |
| rosa_laevigata | RLG00000017265 RLG00000029854 |
| rosa_multiflora | Rmu_sc0000112.1_g000009 Rmu_sc0001286.1_g000019 |
| rosa_roxburghii | Rroxscaffold_2G00139340 Rroxscaffold_4G00320520 |
| rosa_rugosa | Rorug01G0084200 Rorug02G0117400 |
| rosa_samantha | Rh1BG081300 Rh1DG105200 Rh2AG166500 Rh2CG172400 |
| rosa_wichuraiana | Rw0G006900 Rw1G008080 Rw1G008130 Rw2G013040 Rw4G001250 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 2 cut(s) | 1706, 2131 |
| AciI | CCGC | 7 cut(s) | 323, 392, 509, 759, 866, 1018, 1975 |
| AclI | AACGTT | 1 cut(s) | 2628 |
| AclWI | GGATC | 4 cut(s) | 790, 1492, 2388, 2520 |
| AcoI | YGGCCR | 1 cut(s) | 2122 |
| AcsI | RAATTY | 7 cut(s) | 102, 314, 1222, 1694, 1745, 1873, 1912 |
| AcuI | CTGAAG | 2 cut(s) | 198, 563 |
| AdeI | CACNNNGTG | 1 cut(s) | 1706 |
| AfaI | GTAC | 6 cut(s) | 62, 831, 1446, 1545, 2360, 2456 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 1706, 2131, 2163 |
| AjnI | CCWGG | 4 cut(s) | 680, 775, 2115, 2212 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 171, 203, 1214, 1246, 2444, 2476 |
| Alw21I | GWGCWC | 1 cut(s) | 1428 |
| Alw26I | GTCTC | 6 cut(s) | 119, 313, 1528, 1931, 2094, 2347 |
| AlwI | GGATC | 4 cut(s) | 790, 1492, 2388, 2520 |
| Ama87I | CYCGRG | 1 cut(s) | 1866 |
| AoxI | GGCC | 3 cut(s) | 285, 2122, 2139 |
| ApeKI | GCWGC | 3 cut(s) | 6, 2183, 2186 |
| ApoI | RAATTY | 7 cut(s) | 102, 314, 1222, 1694, 1745, 1873, 1912 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2330, 2362 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1747 |
| AspLEI | GCGC | 1 cut(s) | 1792 |
| AspS9I | GGNCC | 6 cut(s) | 653, 1336, 2139, 2216, 2301, 2333 |
| AsuHPI | GGTGA | 7 cut(s) | 23, 97, 196, 496, 506, 2416, 2572 |
| AsuII | TTCGAA | 1 cut(s) | 1220 |
| AvaI | CYCGRG | 1 cut(s) | 1866 |
| AvaII | GGWCC | 5 cut(s) | 653, 1336, 2216, 2301, 2333 |
| AxyI | CCTNAGG | 1 cut(s) | 480 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 165, 198 |
| BalI | TGGCCA | 1 cut(s) | 2124 |
| BauI | CACGAG | 1 cut(s) | 467 |
| BbsI | GAAGAC | 2 cut(s) | 1107, 2340 |
| Bbv12I | GWGCWC | 1 cut(s) | 1428 |
| BbvI | GCAGC | 3 cut(s) | 18, 2170, 2198 |
| BccI | CCATC | 3 cut(s) | 1131, 1563, 1593 |
| BceAI | ACGGC | 1 cut(s) | 2126 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 626, 660, 1713, 1747 |
| BciT130I | CCWGG | 4 cut(s) | 682, 777, 2117, 2214 |
| BclI | TGATCA | 3 cut(s) | 930, 2293, 2529 |
| BcoDI | GTCTC | 6 cut(s) | 119, 313, 1528, 1931, 2094, 2347 |
| BfmI | CTRYAG | 3 cut(s) | 504, 1455, 2184 |
| BglII | AGATCT | 2 cut(s) | 1528, 1780 |
| BisI | GCNGC | 7 cut(s) | 7, 324, 393, 510, 1019, 2184, 2187 |
| BlpI | GCTNAGC | 2 cut(s) | 24, 2013 |
| BlsI | GCNGC | 7 cut(s) | 8, 325, 394, 511, 1020, 2185, 2188 |
| Bme1390I | CCNGG | 4 cut(s) | 682, 777, 2117, 2214 |
| Bme18I | GGWCC | 5 cut(s) | 653, 1336, 2216, 2301, 2333 |
| BmeT110I | CYCGRG | 1 cut(s) | 1866 |
| BmgT120I | GGNCC | 6 cut(s) | 653, 1336, 2139, 2216, 2301, 2333 |
| BmiI | GGNNCC | 5 cut(s) | 2140, 2168, 2302, 2466, 2572 |
| BmrFI | CCNGG | 4 cut(s) | 682, 777, 2117, 2214 |
| BmrI | ACTGGG | 1 cut(s) | 349 |
| BmsI | GCATC | 7 cut(s) | 289, 334, 655, 760, 805, 900, 2199 |
| BmuI | ACTGGG | 1 cut(s) | 349 |
| BpiI | GAAGAC | 2 cut(s) | 1107, 2340 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 2597, 2629 |
| BpmI | CTGGAG | 5 cut(s) | 447, 664, 759, 1058, 1827 |
| Bpu10I | CCTNAGC | 1 cut(s) | 834 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 24, 2013 |
| Bpu14I | TTCGAA | 1 cut(s) | 1220 |
| Bsa29I | ATCGAT | 1 cut(s) | 1723 |
| BsaAI | YACGTR | 1 cut(s) | 533 |
| BsaBI | GATNNNNATC | 1 cut(s) | 15 |
| BsaI | GGTCTC | 1 cut(s) | 2094 |
| BsaJI | CCNNGG | 4 cut(s) | 623, 681, 744, 2157 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 1706, 2131, 2163 |
| Bse1I | ACTGG | 7 cut(s) | 344, 430, 503, 803, 1083, 1304, 1627 |
| Bse21I | CCTNAGG | 1 cut(s) | 480 |
| Bse3DI | GCAATG | 2 cut(s) | 298, 1513 |
| Bse8I | GATNNNNATC | 1 cut(s) | 15 |
| BseBI | CCWGG | 4 cut(s) | 682, 777, 2117, 2214 |
| BseCI | ATCGAT | 1 cut(s) | 1723 |
| BseDI | CCNNGG | 4 cut(s) | 623, 681, 744, 2157 |
| BseGI | GGATG | 5 cut(s) | 349, 568, 799, 1411, 2532 |
| BseJI | GATNNNNATC | 1 cut(s) | 15 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 1706, 2131, 2163 |
| BseMI | GCAATG | 2 cut(s) | 298, 1513 |
| BseNI | ACTGG | 7 cut(s) | 344, 430, 503, 803, 1083, 1304, 1627 |
| BseRI | GAGGAG | 2 cut(s) | 2462, 2522 |
| BseXI | GCAGC | 3 cut(s) | 18, 2170, 2198 |
| BsgI | GTGCAG | 3 cut(s) | 25, 1383, 1656 |
| BshFI | GGCC | 3 cut(s) | 287, 2124, 2141 |
| BshVI | ATCGAT | 1 cut(s) | 1723 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1428 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1866 |
| BslFI | GGGAC | 3 cut(s) | 641, 1847, 2314 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 1706, 2131, 2163 |
| BsmAI | GTCTC | 6 cut(s) | 119, 313, 1528, 1931, 2094, 2347 |
| BsmFI | GGGAC | 3 cut(s) | 641, 1847, 2314 |
| BsnI | GGCC | 3 cut(s) | 287, 2124, 2141 |
| Bso31I | GGTCTC | 1 cut(s) | 2094 |
| BsoBI | CYCGRG | 1 cut(s) | 1866 |
| Bsp119I | TTCGAA | 1 cut(s) | 1220 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1428 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 24, 2013 |
| Bsp19I | CCATGG | 1 cut(s) | 2157 |
| BspACI | CCGC | 7 cut(s) | 323, 392, 509, 759, 866, 1018, 1975 |
| BspANI | GGCC | 3 cut(s) | 287, 2124, 2141 |
| BspDI | ATCGAT | 1 cut(s) | 1723 |
| BspLI | GGNNCC | 5 cut(s) | 2140, 2168, 2302, 2466, 2572 |
| BspMAI | CTGCAG | 2 cut(s) | 1459, 2188 |
| BspPI | GGATC | 4 cut(s) | 790, 1492, 2388, 2520 |
| BspQI | GCTCTTC | 1 cut(s) | 1002 |
| BspT104I | TTCGAA | 1 cut(s) | 1220 |
| BspTNI | GGTCTC | 1 cut(s) | 2094 |
| BsrDI | GCAATG | 2 cut(s) | 298, 1513 |
| BsrI | ACTGG | 7 cut(s) | 344, 430, 503, 803, 1083, 1304, 1627 |
| BssECI | CCNNGG | 4 cut(s) | 623, 681, 744, 2157 |
| BssSI | CACGAG | 1 cut(s) | 467 |
| BssT1I | CCWWGG | 3 cut(s) | 623, 744, 2157 |
| Bst2BI | CACGAG | 1 cut(s) | 467 |
| Bst2UI | CCWGG | 4 cut(s) | 682, 777, 2117, 2214 |
| Bst4CI | ACNGT | 6 cut(s) | 35, 259, 619, 1284, 1467, 2358 |
| Bst6I | CTCTTC | 2 cut(s) | 1002, 1467 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 389, 1370, 2049 |
| BstBAI | YACGTR | 1 cut(s) | 533 |
| BstBI | TTCGAA | 1 cut(s) | 1220 |
| BstC8I | GCNNGC | 3 cut(s) | 289, 864, 1658 |
| BstDSI | CCRYGG | 1 cut(s) | 2157 |
| BstF5I | GGATG | 5 cut(s) | 349, 568, 799, 1411, 2532 |
| BstHHI | GCGC | 1 cut(s) | 1792 |
| BstMAI | GTCTC | 6 cut(s) | 119, 313, 1528, 1931, 2094, 2347 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 389, 428, 1018, 1197, 1370, 2049, 2195 |
| BstNI | CCWGG | 4 cut(s) | 682, 777, 2117, 2214 |
| BstNSI | RCATGY | 1 cut(s) | 2010 |
| BstSCI | CCNGG | 4 cut(s) | 680, 775, 2115, 2212 |
| BstSFI | CTRYAG | 3 cut(s) | 504, 1455, 2184 |
| BstV1I | GCAGC | 3 cut(s) | 18, 2170, 2198 |
| BstV2I | GAAGAC | 2 cut(s) | 1107, 2340 |
| BstX2I | RGATCY | 5 cut(s) | 782, 1528, 1780, 2380, 2512 |
| BstYI | RGATCY | 5 cut(s) | 782, 1528, 1780, 2380, 2512 |
| Bsu15I | ATCGAT | 1 cut(s) | 1723 |
| Bsu36I | CCTNAGG | 1 cut(s) | 480 |
| BsuRI | GGCC | 3 cut(s) | 287, 2124, 2141 |
| BsuTUI | ATCGAT | 1 cut(s) | 1723 |
| BtgI | CCRYGG | 1 cut(s) | 2157 |
| BtsCI | GGATG | 5 cut(s) | 349, 568, 799, 1411, 2532 |
| BtsI | GCAGTG | 3 cut(s) | 387, 1265, 2199 |
| Cac8I | GCNNGC | 3 cut(s) | 289, 864, 1658 |
| CfoI | GCGC | 1 cut(s) | 1792 |
| Cfr13I | GGNCC | 6 cut(s) | 653, 1336, 2139, 2216, 2301, 2333 |
| ClaI | ATCGAT | 1 cut(s) | 1723 |
| Csp6I | GTAC | 6 cut(s) | 61, 830, 1445, 1544, 2359, 2455 |
| CviQI | GTAC | 6 cut(s) | 61, 830, 1445, 1544, 2359, 2455 |
| DraI | TTTAAA | 1 cut(s) | 907 |
| DraIII | CACNNNGTG | 1 cut(s) | 1706 |
| EaeI | YGGCCR | 1 cut(s) | 2122 |
| Eam1104I | CTCTTC | 2 cut(s) | 1002, 1467 |
| EarI | CTCTTC | 2 cut(s) | 1002, 1467 |
| Eco130I | CCWWGG | 3 cut(s) | 623, 744, 2157 |
| Eco31I | GGTCTC | 1 cut(s) | 2094 |
| Eco32I | GATATC | 1 cut(s) | 2148 |
| Eco47I | GGWCC | 5 cut(s) | 653, 1336, 2216, 2301, 2333 |
| Eco57I | CTGAAG | 2 cut(s) | 198, 563 |
| Eco81I | CCTNAGG | 1 cut(s) | 480 |
| Eco88I | CYCGRG | 1 cut(s) | 1866 |
| EcoRI | GAATTC | 1 cut(s) | 314 |
| EcoRII | CCWGG | 4 cut(s) | 680, 775, 2115, 2212 |
| EcoRV | GATATC | 1 cut(s) | 2148 |
| EcoT14I | CCWWGG | 3 cut(s) | 623, 744, 2157 |
| ErhI | CCWWGG | 3 cut(s) | 623, 744, 2157 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1299, 1331 |
| FaqI | GGGAC | 3 cut(s) | 641, 1847, 2314 |
| FbaI | TGATCA | 3 cut(s) | 930, 2293, 2529 |
| Fnu4HI | GCNGC | 7 cut(s) | 7, 324, 393, 510, 1019, 2184, 2187 |
| FokI | GGATG | 5 cut(s) | 356, 575, 786, 1418, 2539 |
| Fsp4HI | GCNGC | 7 cut(s) | 7, 324, 393, 510, 1019, 2184, 2187 |
| GlaI | GCGC | 1 cut(s) | 1791 |
| GluI | GCNGC | 7 cut(s) | 7, 324, 393, 510, 1019, 2184, 2187 |
| GsuI | CTGGAG | 5 cut(s) | 447, 664, 759, 1058, 1827 |
| HaeIII | GGCC | 3 cut(s) | 287, 2124, 2141 |
| HhaI | GCGC | 1 cut(s) | 1792 |
| Hin6I | GCGC | 1 cut(s) | 1790 |
| HinP1I | GCGC | 1 cut(s) | 1790 |
| HincII | GTYRAC | 1 cut(s) | 2271 |
| HindII | GTYRAC | 1 cut(s) | 2271 |
| HindIII | AAGCTT | 2 cut(s) | 26, 836 |
| HphI | GGTGA | 7 cut(s) | 23, 97, 196, 496, 506, 2416, 2572 |
| Hpy166II | GTNNAC | 4 cut(s) | 63, 1336, 1445, 2271 |
| Hpy8I | GTNNAC | 4 cut(s) | 63, 1336, 1445, 2271 |
| Hpy99I | CGWCG | 1 cut(s) | 47 |
| HpyAV | CCTTC | 4 cut(s) | 1058, 1271, 1390, 2551 |
| HpyCH4III | ACNGT | 6 cut(s) | 35, 259, 619, 1284, 1467, 2358 |
| HpyCH4IV | ACGT | 4 cut(s) | 532, 844, 2522, 2628 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 389, 428, 1018, 1197, 1370, 2049, 2195 |
| HpySE526I | ACGT | 4 cut(s) | 532, 844, 2522, 2628 |
| HspAI | GCGC | 1 cut(s) | 1790 |
| Ksp22I | TGATCA | 3 cut(s) | 930, 2293, 2529 |
| LguI | GCTCTTC | 1 cut(s) | 1002 |
| Lsp1109I | GCAGC | 3 cut(s) | 18, 2170, 2198 |
| LweI | GCATC | 7 cut(s) | 289, 334, 655, 760, 805, 900, 2199 |
| MaeII | ACGT | 4 cut(s) | 532, 844, 2522, 2628 |
| MaeIII | GTNAC | 6 cut(s) | 85, 494, 2068, 2094, 2228, 2486 |
| MfeI | CAATTG | 3 cut(s) | 1433, 2151, 2342 |
| MflI | RGATCY | 5 cut(s) | 782, 1528, 1780, 2380, 2512 |
| MhlI | GDGCHC | 1 cut(s) | 1428 |
| MlsI | TGGCCA | 1 cut(s) | 2124 |
| MluNI | TGGCCA | 1 cut(s) | 2124 |
| MlyI | GAGTC | 4 cut(s) | 274, 1235, 1796, 1993 |
| MmeI | TCCRAC | 5 cut(s) | 1266, 1343, 1411, 2339, 2640 |
| Mox20I | TGGCCA | 1 cut(s) | 2124 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1747 |
| MscI | TGGCCA | 1 cut(s) | 2124 |
| MslI | CAYNNNNRTG | 3 cut(s) | 342, 1688, 2585 |
| Msp20I | TGGCCA | 1 cut(s) | 2124 |
| MspA1I | CMGCKG | 1 cut(s) | 2189 |
| MspR9I | CCNGG | 4 cut(s) | 682, 777, 2117, 2214 |
| MunI | CAATTG | 3 cut(s) | 1433, 2151, 2342 |
| MvaI | CCWGG | 4 cut(s) | 682, 777, 2117, 2214 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 389, 428, 1018, 1197, 1370, 2049, 2195 |
| NcoI | CCATGG | 1 cut(s) | 2157 |
| NlaIV | GGNNCC | 5 cut(s) | 2140, 2168, 2302, 2466, 2572 |
| NmuCI | GTSAC | 4 cut(s) | 85, 494, 2068, 2486 |
| NspI | RCATGY | 1 cut(s) | 2010 |
| NspV | TTCGAA | 1 cut(s) | 1220 |
| PaeR7I | CTCGAG | 1 cut(s) | 1866 |
| PciSI | GCTCTTC | 1 cut(s) | 1002 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 529 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1747 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 1706, 2131 |
| PkrI | GCNGC | 7 cut(s) | 8, 325, 394, 511, 1020, 2185, 2188 |
| PleI | GAGTC | 4 cut(s) | 273, 1235, 1796, 1992 |
| PpsI | GAGTC | 4 cut(s) | 273, 1235, 1796, 1992 |
| Ppu21I | YACGTR | 1 cut(s) | 533 |
| Psp1406I | AACGTT | 1 cut(s) | 2628 |
| Psp6I | CCWGG | 4 cut(s) | 680, 775, 2115, 2212 |
| PspGI | CCWGG | 4 cut(s) | 680, 775, 2115, 2212 |
| PspN4I | GGNNCC | 5 cut(s) | 2140, 2168, 2302, 2466, 2572 |
| PspPI | GGNCC | 6 cut(s) | 653, 1336, 2139, 2216, 2301, 2333 |
| PstI | CTGCAG | 2 cut(s) | 1459, 2188 |
| PsuI | RGATCY | 5 cut(s) | 782, 1528, 1780, 2380, 2512 |
| PvuII | CAGCTG | 1 cut(s) | 2189 |
| RsaI | GTAC | 6 cut(s) | 62, 831, 1446, 1545, 2360, 2456 |
| RsaNI | GTAC | 6 cut(s) | 61, 830, 1445, 1544, 2359, 2455 |
| RseI | CAYNNNNRTG | 3 cut(s) | 342, 1688, 2585 |
| SapI | GCTCTTC | 1 cut(s) | 1002 |
| SatI | GCNGC | 7 cut(s) | 7, 324, 393, 510, 1019, 2184, 2187 |
| Sau96I | GGNCC | 6 cut(s) | 653, 1336, 2139, 2216, 2301, 2333 |
| SchI | GAGTC | 4 cut(s) | 274, 1235, 1796, 1993 |
| ScrFI | CCNGG | 4 cut(s) | 682, 777, 2117, 2214 |
| SduI | GDGCHC | 1 cut(s) | 1428 |
| SfaNI | GCATC | 7 cut(s) | 289, 334, 655, 760, 805, 900, 2199 |
| SfcI | CTRYAG | 3 cut(s) | 504, 1455, 2184 |
| Sfr274I | CTCGAG | 1 cut(s) | 1866 |
| SfuI | TTCGAA | 1 cut(s) | 1220 |
| SinI | GGWCC | 5 cut(s) | 653, 1336, 2216, 2301, 2333 |
| SlaI | CTCGAG | 1 cut(s) | 1866 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 342, 1688, 2585 |
| SmlI | CTYRAG | 1 cut(s) | 1866 |
| SmoI | CTYRAG | 1 cut(s) | 1866 |
| SsiI | CCGC | 7 cut(s) | 323, 392, 509, 759, 866, 1018, 1975 |
| SspI | AATATT | 2 cut(s) | 1055, 2642 |
| StyD4I | CCNGG | 4 cut(s) | 680, 775, 2115, 2212 |
| StyI | CCWWGG | 3 cut(s) | 623, 744, 2157 |
| TaaI | ACNGT | 6 cut(s) | 35, 259, 619, 1284, 1467, 2358 |
| TaiI | ACGT | 4 cut(s) | 535, 847, 2525, 2631 |
| TaqI | TCGA | 9 cut(s) | 42, 413, 750, 1220, 1723, 1763, 1867, 1916, 2351 |
| TatI | WGTACW | 1 cut(s) | 1543 |
| TauI | GCSGC | 4 cut(s) | 326, 395, 512, 1021 |
| TseFI | GTSAC | 4 cut(s) | 85, 494, 2068, 2486 |
| TseI | GCWGC | 3 cut(s) | 6, 2183, 2186 |
| Tsp45I | GTSAC | 4 cut(s) | 85, 494, 2068, 2486 |
| TspGWI | ACGGA | 4 cut(s) | 44, 48, 2087, 2472 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 1706, 2131 |
| VpaK11BI | GGWCC | 5 cut(s) | 653, 1336, 2216, 2301, 2333 |
| XapI | RAATTY | 7 cut(s) | 102, 314, 1222, 1694, 1745, 1873, 1912 |
| XbaI | TCTAGA | 4 cut(s) | 787, 812, 2383, 2594 |
| XceI | RCATGY | 1 cut(s) | 2010 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 1033, 2132 |
| XhoI | CTCGAG | 1 cut(s) | 1866 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1747 |