Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0005021

Physical Location & Seq

Genomic Coordinates Forward (+)

18027562 .. 18030473

Gene Structure 2912 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g23910.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGTTTCCTGTGCTGATGATCAGGCTCATTTTCCGAACCTACTCTCAGCAGTCAGTTCTTGTTTCATGGTTGCAACTTGTCCATGATTACTTTGGAGAGCTTCTGCGGCAACCCATTAGTCCTCTTGAATATCAGGTTGATTGCCTGGAAGGGTCTCCATTTCTATCCAGTGTTTCTGATACAGAAGTAAACAGTCTGTCTTCCCGCCATCTGCAAAGACAGGCTATTTTCCTCTTTCTGAGGTGTTCTTTTGGTTTGATTAGCTCGAACGAAGGAACTAACAACAAATGTGCTTGTGCGATTTGGAACTTATGCTTGACGTGTGACTCAAAAACAGAGCTGGGATGTTGTGGACGAAAGAAAGGTCTATTGGAGCTTTATAGCTGGCTTCAAGGGCATCTTCCAACTGATATGTCAGTGGACCATGAAATGTATTTTGAAAAATGTGTTGATTTTGCTAAATCATTCCTCCAACTATACATTAAAGAGGATGATGTATTATTCAAAGTTCTCCTGCAATTGCTCTCTGTACCTTTTTGTGCCGAAGAACAGTTGGAAAAGGAAAAGGGAGCATTTCAGGATTCAGAGGGCAATACGTTTTTTCGTGTCTCGGATATTTTCAATCCTGTGCTCTTATTCCATCTATTTCTGTTAGAGTTGAGCTATGACCATCAGGTGCTCCTTGATTACCTTATTTCGAAAGATACCGGAATCAGCTGCGCAGAATATCTTTTAAGGTGCTTGCGTAAAGTGTTCGATTCATGGAGCTTATTTGTGGAGTTCTCAATGTGTCGACAAGCTACAAATCAATCATCTAAGAGAAGAAAAGTTGCATCGGAAGTGTGGAGTTGCAAGGGCACTCAAAATGGAGGAAAGTATTTTAAAGAAGCCAAAGGGTGCTTGCTTACGTTGAAAAATTCAATTGAAAGTCTACACCGAAAGAATCTGTTTCCTTACAATCCTAATGTTCTTCTGAACCGCTTAACGCGATTTCAGGAACTCTGTTTTGAGGAAAAGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LINES_C LINES_N

Protein Analysis

341

Amino Acids

39.36

Weight (kDa)

6.66

Isoelectric Point (pI)

47.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005021)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50430 AT3G50430
fragaria_vesca	FvH4_1g14850
malus_domestica	MD06G1092200.v1.1 MD15G1276100.v1.1
prunus_persica	Prupe.5G239300_v2.0.a1 Prupe.7G141900_v2.0.a1 Prupe.7G141900_v2.0.a1
pyrus_communis	pycom06g08810 pycom15g23900 pycom15g23910
rosa_chinensis	RchiOBHm_Chr1g0329901 RchiOBHm_Chr2g0103811
rosa_laevigata	RLG00000017265 RLG00000029854
rosa_multiflora	Rmu_sc0000112.1_g000009 Rmu_sc0001286.1_g000019
rosa_roxburghii	Rroxscaffold_2G00139340 Rroxscaffold_4G00320520
rosa_rugosa	Rorug01G0084200 Rorug02G0117400
rosa_samantha	Rh1BG081300 Rh1DG105200 Rh2AG166500 Rh2CG172400
rosa_wichuraiana	Rw0G006900 Rw1G008080 Rw1G008130 Rw2G013040 Rw4G001250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	721
AccI	GTMKAC	2 cut(s)	793, 931
AccII	CGCG	1 cut(s)	988
AciI	CCGC	3 cut(s)	106, 205, 979
AcsI	RAATTY	1 cut(s)	916
AfaI	GTAC	1 cut(s)	531
AflIII	ACRYGT	1 cut(s)	320
AgsI	TTSAA	8 cut(s)	128, 392, 440, 505, 622, 913, 921, 926
AjiI	CACGTC	1 cut(s)	321
AjnI	CCWGG	1 cut(s)	144
AjuI	GAANNNNNNNTTGG	2 cut(s)	353, 385
AluBI	AGCT	9 cut(s)	100, 264, 340, 376, 384, 663, 717, 768, 800
AluI	AGCT	9 cut(s)	100, 264, 340, 376, 384, 663, 717, 768, 800
Alw21I	GWGCWC	2 cut(s)	633, 681
Alw26I	GTCTC	2 cut(s)	159, 613
ApeKI	GCWGC	1 cut(s)	717
ApoI	RAATTY	1 cut(s)	916
ArsI	GACNNNNNNTTYG	2 cut(s)	349, 381
AspLEI	GCGC	1 cut(s)	722
AspS9I	GGNCC	1 cut(s)	421
AsuII	TTCGAA	1 cut(s)	698
AvaII	GGWCC	1 cut(s)	421
BaeGI	GKGCMC	1 cut(s)	860
BaeI	ACNNNNGTAYC	2 cut(s)	171, 204
BbsI	GAAGAC	1 cut(s)	192
Bbv12I	GWGCWC	2 cut(s)	633, 681
BbvI	GCAGC	1 cut(s)	704
BccI	CCATC	3 cut(s)	216, 648, 678
BciT130I	CCWGG	1 cut(s)	146
BclI	TGATCA	1 cut(s)	18
BcoDI	GTCTC	2 cut(s)	159, 613
BisI	GCNGC	2 cut(s)	107, 718
BlsI	GCNGC	2 cut(s)	108, 719
Bme1390I	CCNGG	1 cut(s)	146
Bme18I	GGWCC	1 cut(s)	421
BmgBI	CACGTC	1 cut(s)	321
BmgT120I	GGNCC	1 cut(s)	421
BmrFI	CCNGG	1 cut(s)	146
BmsI	GCATC	2 cut(s)	406, 842
BpiI	GAAGAC	1 cut(s)	192
Bpu14I	TTCGAA	1 cut(s)	698
BsaI	GGTCTC	1 cut(s)	159
BsaWI	WCCGGW	1 cut(s)	707
Bse1I	ACTGG	1 cut(s)	168
BseBI	CCWGG	1 cut(s)	146
BseGI	GGATG	2 cut(s)	350, 496
BseMII	CTCAG	2 cut(s)	59, 230
BseNI	ACTGG	1 cut(s)	168
BseSI	GKGCMC	1 cut(s)	860
BseXI	GCAGC	1 cut(s)	704
BseYI	CCCAGC	1 cut(s)	340
Bsh1236I	CGCG	1 cut(s)	988
BsiHKAI	GWGCWC	2 cut(s)	633, 681
BsiSI	CCGG	1 cut(s)	708
BsmAI	GTCTC	2 cut(s)	159, 613
Bso31I	GGTCTC	1 cut(s)	159
Bsp119I	TTCGAA	1 cut(s)	698
Bsp1286I	GDGCHC	3 cut(s)	633, 681, 860
Bsp143I	GATC	1 cut(s)	18
BspACI	CCGC	3 cut(s)	106, 205, 979
BspCNI	CTCAG	2 cut(s)	58, 231
BspFNI	CGCG	1 cut(s)	988
BspT104I	TTCGAA	1 cut(s)	698
BspTNI	GGTCTC	1 cut(s)	159
BsrI	ACTGG	1 cut(s)	168
BssMI	GATC	1 cut(s)	18
Bst2UI	CCWGG	1 cut(s)	146
Bst4CI	ACNGT	2 cut(s)	194, 552
BstBI	TTCGAA	1 cut(s)	698
BstC8I	GCNNGC	3 cut(s)	386, 743, 902
BstDEI	CTNAG	3 cut(s)	45, 239, 816
BstF5I	GGATG	2 cut(s)	350, 496
BstFNI	CGCG	1 cut(s)	988
BstHHI	GCGC	1 cut(s)	722
BstKTI	GATC	1 cut(s)	21
BstMAI	GTCTC	2 cut(s)	159, 613
BstMBI	GATC	1 cut(s)	18
BstMWI	GCNNNNNNNGC	2 cut(s)	106, 394
BstNI	CCWGG	1 cut(s)	146
BstSCI	CCNGG	1 cut(s)	144
BstSLI	GKGCMC	1 cut(s)	860
BstUI	CGCG	1 cut(s)	988
BstV1I	GCAGC	1 cut(s)	704
BstV2I	GAAGAC	1 cut(s)	192
BtrI	CACGTC	1 cut(s)	321
BtsCI	GGATG	2 cut(s)	350, 496
BtsIMutI	CAGTG	2 cut(s)	175, 423
Cac8I	GCNNGC	3 cut(s)	386, 743, 902
CfoI	GCGC	1 cut(s)	722
Cfr13I	GGNCC	1 cut(s)	421
Csp6I	GTAC	1 cut(s)	530
CviAII	CATG	4 cut(s)	66, 83, 425, 762
CviQI	GTAC	1 cut(s)	530
DdeI	CTNAG	3 cut(s)	45, 239, 816
DpnI	GATC	1 cut(s)	20
DpnII	GATC	1 cut(s)	18
DraI	TTTAAA	1 cut(s)	883
Eco31I	GGTCTC	1 cut(s)	159
Eco47I	GGWCC	1 cut(s)	421
EcoRII	CCWGG	1 cut(s)	144
FaeI	CATG	4 cut(s)	69, 86, 428, 765
FaiI	YATR	9 cut(s)	67, 84, 313, 381, 413, 426, 478, 666, 763
FalI	AAGNNNNNCTT	2 cut(s)	384, 416
FatI	CATG	4 cut(s)	65, 82, 424, 761
FauI	CCCGC	1 cut(s)	212
FbaI	TGATCA	1 cut(s)	18
FblI	GTMKAC	2 cut(s)	793, 931
Fnu4HI	GCNGC	2 cut(s)	107, 718
FokI	GGATG	2 cut(s)	357, 503
Fsp4HI	GCNGC	2 cut(s)	107, 718
FspI	TGCGCA	1 cut(s)	721
GlaI	GCGC	1 cut(s)	721
GluI	GCNGC	2 cut(s)	107, 718
GsaI	CCCAGC	1 cut(s)	344
HapII	CCGG	1 cut(s)	708
HhaI	GCGC	1 cut(s)	722
Hin1II	CATG	4 cut(s)	69, 86, 428, 765
Hin6I	GCGC	1 cut(s)	720
HinP1I	GCGC	1 cut(s)	720
HincII	GTYRAC	1 cut(s)	794
HindII	GTYRAC	1 cut(s)	794
HinfI	GANTC	5 cut(s)	326, 581, 711, 758, 943
HpaII	CCGG	1 cut(s)	708
Hpy166II	GTNNAC	5 cut(s)	190, 353, 421, 794, 932
Hpy188I	TCNGA	7 cut(s)	35, 178, 240, 586, 613, 838, 975
Hpy188III	TCNNGA	3 cut(s)	125, 578, 995
Hpy8I	GTNNAC	5 cut(s)	190, 353, 421, 794, 932
HpyAV	CCTTC	2 cut(s)	143, 266
HpyCH4III	ACNGT	2 cut(s)	194, 552
HpyCH4IV	ACGT	3 cut(s)	320, 596, 908
HpyCH4V	TGCA	5 cut(s)	73, 214, 517, 833, 852
HpyF10VI	GCNNNNNNNGC	2 cut(s)	106, 394
HpyF3I	CTNAG	3 cut(s)	45, 239, 816
HpySE526I	ACGT	3 cut(s)	320, 596, 908
Hsp92II	CATG	4 cut(s)	69, 86, 428, 765
HspAI	GCGC	1 cut(s)	720
Ksp22I	TGATCA	1 cut(s)	18
Kzo9I	GATC	1 cut(s)	18
LmnI	GCTCC	4 cut(s)	373, 569, 684, 765
Lsp1109I	GCAGC	1 cut(s)	704
LweI	GCATC	2 cut(s)	406, 842
MaeII	ACGT	3 cut(s)	320, 596, 908
MaeIII	GTNAC	1 cut(s)	323
MalI	GATC	1 cut(s)	20
MboI	GATC	1 cut(s)	18
MboII	GAAGA	5 cut(s)	192, 392, 557, 834, 962
MfeI	CAATTG	2 cut(s)	518, 921
MhlI	GDGCHC	3 cut(s)	633, 681, 860
MluCI	AATT	3 cut(s)	518, 916, 921
MlyI	GAGTC	1 cut(s)	320
MmeI	TCCRAC	3 cut(s)	428, 496, 534
MnlI	CCTC	8 cut(s)	132, 234, 242, 479, 481, 580, 863, 1003
MseI	TTAA	4 cut(s)	483, 734, 882, 983
MspA1I	CMGCKG	1 cut(s)	717
MspI	CCGG	1 cut(s)	708
MspR9I	CCNGG	1 cut(s)	146
MunI	CAATTG	2 cut(s)	518, 921
MvaI	CCWGG	1 cut(s)	146
MvnI	CGCG	1 cut(s)	988
MwoI	GCNNNNNNNGC	2 cut(s)	106, 394
NdeII	GATC	1 cut(s)	18
NlaIII	CATG	4 cut(s)	69, 86, 428, 765
NmuCI	GTSAC	1 cut(s)	323
NsbI	TGCGCA	1 cut(s)	721
NspV	TTCGAA	1 cut(s)	698
PfeI	GAWTC	4 cut(s)	581, 711, 758, 943
PkrI	GCNGC	2 cut(s)	108, 719
PleI	GAGTC	1 cut(s)	320
PpsI	GAGTC	1 cut(s)	320
Psp6I	CCWGG	1 cut(s)	144
PspFI	CCCAGC	1 cut(s)	340
PspGI	CCWGG	1 cut(s)	144
PspPI	GGNCC	1 cut(s)	421
PvuII	CAGCTG	1 cut(s)	717
RsaI	GTAC	1 cut(s)	531
RsaNI	GTAC	1 cut(s)	530
SalI	GTCGAC	1 cut(s)	792
SaqAI	TTAA	4 cut(s)	483, 734, 882, 983
SatI	GCNGC	2 cut(s)	107, 718
Sau3AI	GATC	1 cut(s)	18
Sau96I	GGNCC	1 cut(s)	421
SchI	GAGTC	1 cut(s)	320
ScrFI	CCNGG	1 cut(s)	146
SduI	GDGCHC	3 cut(s)	633, 681, 860
SfaNI	GCATC	2 cut(s)	406, 842
SfuI	TTCGAA	1 cut(s)	698
SinI	GGWCC	1 cut(s)	421
Sse9I	AATT	3 cut(s)	518, 916, 921
SsiI	CCGC	3 cut(s)	106, 205, 979
StyD4I	CCNGG	1 cut(s)	144
TaaI	ACNGT	2 cut(s)	194, 552
TaiI	ACGT	3 cut(s)	323, 599, 911
TaqI	TCGA	4 cut(s)	266, 698, 756, 793
TasI	AATT	3 cut(s)	518, 916, 921
TauI	GCSGC	1 cut(s)	109
TfiI	GAWTC	4 cut(s)	581, 711, 758, 943
Tru1I	TTAA	4 cut(s)	483, 734, 882, 983
Tru9I	TTAA	4 cut(s)	483, 734, 882, 983
TscAI	CASTG	2 cut(s)	175, 423
TseFI	GTSAC	1 cut(s)	323
TseI	GCWGC	1 cut(s)	717
Tsp45I	GTSAC	1 cut(s)	323
TspDTI	ATGAA	3 cut(s)	54, 441, 750
TspRI	CASTG	2 cut(s)	175, 423
VpaK11BI	GGWCC	1 cut(s)	421
XapI	RAATTY	1 cut(s)	916
XcmI	CCANNNNNNNNNTGG	1 cut(s)	89
XmiI	GTMKAC	2 cut(s)	793, 931

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.