RLG00000029854

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0005021
Physical Location & Seq
Reverse (-)
50210346 .. 50213459
3114 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029854

Sequence Viewer

Length: 1521 bp
ATGAAGCGTCGATTCAGAATGTGCAGTGATTCAAATCTGACGAAGCTCCACCGTCTGATCGATGATTCTCTCCGTCCTGGTGATTGGATTGGATTGGATTTTGAGAATGAGTGTATGTGTCTGAGTAAAATCTTAACTTACTTGATTGTTTTGCTAACAGTGGAGAGTCAATATGTGAAGCATCTGGCCTGCAATGTTCTAGCTGCTGTCTCCGAATTCGTGGCGGCTTGGGGAAGCCACTGGGATGCCTTTATTCGTTTGTTGTGTGATTGTATGGATTTGGCAATCACTGCGGCAGTTTCATGTTCTACATCTACTTTGGCAACTGGAGCTAGTGATCTTTGTTCTAGTTCATTGAGTTTAATTCTCGTGCTGAAACCTAACGTGAAAAATGGTGACTGGTCTGTAGCGGCTGGTGTTGTTCGGTGCCTTGGGGATTTATTGCATGAGATTCGTGTTGGTCCAAATGCTGATGCTCTGAAATGCTCCAGGGCAGATGTTTCATTCCAAAGAACCTTGTTTTTAGGAAACTTGATTCAGTTTCTCTGTTCCTTGGTCGAGCAAGGCAGTGTTGTCGATTCTCCAGGTGGATCTCTAGACAAGCATCATCCAGTGTTTTCTAGAATCGTCAACCTTGTACCTAAGCTTTTACGTTTATGCCTTGGGGAGCGGGCGGATTGTGTTCTCTCTCACAACTGCATCTCTCAATACTTTAAACACAAGTTATTGAATCCTCAATTCTTGTTTCATGGTTGCAACTTATCCGTTATTACTTTGAAGAGCTTTTGCGGCAACCCATTTCTACTCTGGAGTGTAATCAGGAAGATTGTTTGGAAGGCTCTCCATTTCTATCCAGTGTTTCTGATTCAGAAAAAATGTGCTTGTGCAAGTTGGAATTTATGCTTGGACTATGACTCAAATGCAGAGTTGCAGTGTTGTGGAAGAAAGGAAGGACTGTTGGAGCTTAATAACTGGCTTCAAGGACATCTTCCAACTGATATGTTTGTGGACCATGAAATGTATTTTGAAAAATGTGCAGACTTTGCCAAATCCTTCCTCCAACTATATATCAAAGAGGATGATGTATTATTCAGAGTGCTCTTGCAATTGCTTTGTGTACCTTGTCCTGCAGAGAAACAGTTTCAAGAGGAAAGGGGATCATTTCAGGATTCAAAGGGCAATGTGCTTTTCTTTGTTTCAGATCTTTTCAATCCTGTACTCTTATTCCATCTATTTTTTGTAGAGTTAAGCTATGACCATCAGGTGCTTCTTGATTACCTTATTACAAAAGATACTGGAATCAGTTGTGCAGAATATCTTTTAAGGTGCTTGCGTAAAGTGTGTGATTCATGGAGCTTATTTGTGGAATTTCCACCGAGTGGACAAGCTATTAATCGATCGTCTTGCAAGAAAAGAAAAGTTTCATTGAATGGGTCGAGTTTCTGTGGAGTAGATTTGTTTGCGCTAGTGAAAGACTCTGGAGGTTCGTTTCTTGAAGATGAATGTGACGATGAAAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LINES_C LINES_N

Protein Analysis

507

Amino Acids

56.95

Weight (kDa)

6.07

Isoelectric Point (pI)

38.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LINES_N PF14694 333 - 456 1.3e-08 Lines N-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 426
AccB7I CCANNNNNTGG 1 cut(s) 1379
AccBSI CCGCTC 1 cut(s) 670
AciI CCGC 6 cut(s) 224, 293, 410, 670, 674, 789
AclWI GGATC 2 cut(s) 598, 1165
AcsI RAATTY 3 cut(s) 215, 895, 1367
AdeI CACNNNGTG 1 cut(s) 1379
AfaI GTAC 3 cut(s) 639, 1119, 1218
AfiI CCNNNNNNNGG 1 cut(s) 1379
AjnI CCWGG 3 cut(s) 76, 488, 583
AjuI GAANNNNNNNTTGG 2 cut(s) 887, 919
Alw21I GWGCWC 1 cut(s) 1101
Alw26I GTCTC 1 cut(s) 214
AlwI GGATC 2 cut(s) 598, 1165
AoxI GGCC 1 cut(s) 186
ApeKI GCWGC 1 cut(s) 203
ApoI RAATTY 3 cut(s) 215, 895, 1367
AseI ATTAAT 1 cut(s) 1392
Asp700I GAANNNNTTC 1 cut(s) 1420
AspLEI GCGC 1 cut(s) 1465
AspS9I GGNCC 2 cut(s) 461, 1009
AsuHPI GGTGA 2 cut(s) 92, 407
AvaII GGWCC 2 cut(s) 461, 1009
BanI GGYRCC 1 cut(s) 426
BauI CACGAG 1 cut(s) 368
Bbv12I GWGCWC 1 cut(s) 1101
BbvI GCAGC 1 cut(s) 190
BccI CCATC 2 cut(s) 1236, 1266
BcgI CGANNNNNNTGC 6 cut(s) 434, 468, 556, 590, 1386, 1420
BciT130I CCWGG 3 cut(s) 78, 490, 585
BcoDI GTCTC 1 cut(s) 214
BfaI CTAG 6 cut(s) 200, 333, 348, 596, 621, 1466
BfmI CTRYAG 2 cut(s) 405, 1128
BglII AGATCT 1 cut(s) 1201
BisI GCNGC 5 cut(s) 204, 225, 294, 411, 790
BlsI GCNGC 5 cut(s) 205, 226, 295, 412, 791
Bme1390I CCNGG 3 cut(s) 78, 490, 585
Bme18I GGWCC 2 cut(s) 461, 1009
BmgT120I GGNCC 2 cut(s) 461, 1009
BmiI GGNNCC 1 cut(s) 428
BmrFI CCNGG 3 cut(s) 78, 490, 585
BmrI ACTGGG 1 cut(s) 250
BmsI GCATC 5 cut(s) 190, 235, 463, 613, 708
BmuI ACTGGG 1 cut(s) 250
BpmI CTGGAG 5 cut(s) 348, 472, 567, 829, 1500
Bpu10I CCTNAGC 1 cut(s) 642
Bsa29I ATCGAT 2 cut(s) 60, 1396
BsaBI GATNNNNATC 1 cut(s) 33
BsaJI CCNNGG 4 cut(s) 430, 489, 552, 661
Bsc4I CCNNNNNNNGG 1 cut(s) 1379
Bse1I ACTGG 7 cut(s) 245, 331, 404, 611, 854, 977, 1300
Bse3DI GCAATG 2 cut(s) 199, 1186
Bse8I GATNNNNATC 1 cut(s) 33
BseBI CCWGG 3 cut(s) 78, 490, 585
BseCI ATCGAT 2 cut(s) 60, 1396
BseDI CCNNGG 4 cut(s) 430, 489, 552, 661
BseGI GGATG 3 cut(s) 250, 607, 1084
BseJI GATNNNNATC 1 cut(s) 33
BseLI CCNNNNNNNGG 1 cut(s) 1379
BseMI GCAATG 2 cut(s) 199, 1186
BseMII CTCAG 1 cut(s) 113
BseNI ACTGG 7 cut(s) 245, 331, 404, 611, 854, 977, 1300
BseXI GCAGC 1 cut(s) 190
BsgI GTGCAG 3 cut(s) 43, 1056, 1329
Bsh1285I CGRYCG 1 cut(s) 1400
BshFI GGCC 1 cut(s) 188
BshNI GGYRCC 1 cut(s) 426
BshVI ATCGAT 2 cut(s) 60, 1396
BsiEI CGRYCG 1 cut(s) 1400
BsiHKAI GWGCWC 1 cut(s) 1101
BslI CCNNNNNNNGG 1 cut(s) 1379
BsmAI GTCTC 1 cut(s) 214
BsnI GGCC 1 cut(s) 188
Bsp1286I GDGCHC 1 cut(s) 1101
Bsp143I GATC 6 cut(s) 57, 337, 590, 1157, 1201, 1397
BspACI CCGC 6 cut(s) 224, 293, 410, 670, 674, 789
BspANI GGCC 1 cut(s) 188
BspCNI CTCAG 1 cut(s) 114
BspDI ATCGAT 2 cut(s) 60, 1396
BspLI GGNNCC 1 cut(s) 428
BspMAI CTGCAG 1 cut(s) 1132
BspPI GGATC 2 cut(s) 598, 1165
BspQI GCTCTTC 1 cut(s) 773
BspT107I GGYRCC 1 cut(s) 426
BsrBI CCGCTC 1 cut(s) 670
BsrDI GCAATG 2 cut(s) 199, 1186
BsrI ACTGG 7 cut(s) 245, 331, 404, 611, 854, 977, 1300
BssECI CCNNGG 4 cut(s) 430, 489, 552, 661
BssMI GATC 6 cut(s) 57, 337, 590, 1157, 1201, 1397
BssSI CACGAG 1 cut(s) 368
BssT1I CCWWGG 3 cut(s) 430, 552, 661
Bst2BI CACGAG 1 cut(s) 368
Bst2UI CCWGG 3 cut(s) 78, 490, 585
Bst4CI ACNGT 4 cut(s) 53, 160, 957, 1140
Bst6I CTCTTC 1 cut(s) 773
BstAPI GCANNNNNTGC 2 cut(s) 290, 1043
BstC8I GCNNGC 3 cut(s) 190, 672, 1331
BstDEI CTNAG 2 cut(s) 122, 642
BstF5I GGATG 3 cut(s) 250, 607, 1084
BstHHI GCGC 1 cut(s) 1465
BstKTI GATC 6 cut(s) 60, 340, 593, 1160, 1204, 1400
BstMAI GTCTC 1 cut(s) 214
BstMBI GATC 6 cut(s) 57, 337, 590, 1157, 1201, 1397
BstMCI CGRYCG 1 cut(s) 1400
BstMWI GCNNNNNNNGC 4 cut(s) 290, 329, 789, 1043
BstNI CCWGG 3 cut(s) 78, 490, 585
BstSCI CCNGG 3 cut(s) 76, 488, 583
BstSFI CTRYAG 2 cut(s) 405, 1128
BstV1I GCAGC 1 cut(s) 190
BstX2I RGATCY 2 cut(s) 590, 1201
BstYI RGATCY 2 cut(s) 590, 1201
Bsu15I ATCGAT 2 cut(s) 60, 1396
BsuRI GGCC 1 cut(s) 188
BsuTUI ATCGAT 2 cut(s) 60, 1396
BtsCI GGATG 3 cut(s) 250, 607, 1084
BtsI GCAGTG 4 cut(s) 31, 288, 574, 938
BtsIMutI CAGTG 8 cut(s) 31, 165, 238, 288, 574, 618, 861, 938
Cac8I GCNNGC 3 cut(s) 190, 672, 1331
CfoI GCGC 1 cut(s) 1465
Cfr13I GGNCC 2 cut(s) 461, 1009
ClaI ATCGAT 2 cut(s) 60, 1396
Csp6I GTAC 3 cut(s) 638, 1118, 1217
CviAII CATG 5 cut(s) 303, 446, 749, 1013, 1350
CviQI GTAC 3 cut(s) 638, 1118, 1217
DdeI CTNAG 2 cut(s) 122, 642
DpnI GATC 6 cut(s) 59, 339, 592, 1159, 1203, 1399
DpnII GATC 6 cut(s) 57, 337, 590, 1157, 1201, 1397
DraI TTTAAA 1 cut(s) 715
DraIII CACNNNGTG 1 cut(s) 1379
Eam1104I CTCTTC 1 cut(s) 773
EarI CTCTTC 1 cut(s) 773
EciI GGCGGA 1 cut(s) 689
Eco130I CCWWGG 3 cut(s) 430, 552, 661
Eco47I GGWCC 2 cut(s) 461, 1009
EcoRI GAATTC 1 cut(s) 215
EcoRII CCWGG 3 cut(s) 76, 488, 583
EcoT14I CCWWGG 3 cut(s) 430, 552, 661
ErhI CCWWGG 3 cut(s) 430, 552, 661
FaeI CATG 5 cut(s) 306, 449, 752, 1016, 1353
FalI AAGNNNNNCTT 2 cut(s) 972, 1004
FatI CATG 5 cut(s) 302, 445, 748, 1012, 1349
FauI CCCGC 1 cut(s) 663
Fnu4HI GCNGC 5 cut(s) 204, 225, 294, 411, 790
FokI GGATG 3 cut(s) 257, 594, 1091
Fsp4HI GCNGC 5 cut(s) 204, 225, 294, 411, 790
FspBI CTAG 6 cut(s) 200, 333, 348, 596, 621, 1466
GlaI GCGC 1 cut(s) 1464
GluI GCNGC 5 cut(s) 204, 225, 294, 411, 790
GsuI CTGGAG 5 cut(s) 348, 472, 567, 829, 1500
HaeIII GGCC 1 cut(s) 188
HhaI GCGC 1 cut(s) 1465
Hin1II CATG 5 cut(s) 306, 449, 752, 1016, 1353
Hin6I GCGC 1 cut(s) 1463
HinP1I GCGC 1 cut(s) 1463
HincII GTYRAC 1 cut(s) 631
HindII GTYRAC 1 cut(s) 631
HindIII AAGCTT 1 cut(s) 644
HphI GGTGA 2 cut(s) 92, 407
Hpy166II GTNNAC 4 cut(s) 631, 1009, 1118, 1382
Hpy188III TCNNGA 9 cut(s) 596, 621, 808, 820, 1145, 1166, 1271, 1479, 1493
Hpy8I GTNNAC 4 cut(s) 631, 1009, 1118, 1382
Hpy99I CGWCG 1 cut(s) 12
HpyAV CCTTC 3 cut(s) 829, 944, 1063
HpyCH4III ACNGT 4 cut(s) 53, 160, 957, 1140
HpyCH4IV ACGT 2 cut(s) 384, 652
HpyF10VI GCNNNNNNNGC 4 cut(s) 290, 329, 789, 1043
HpyF3I CTNAG 2 cut(s) 122, 642
HpySE526I ACGT 2 cut(s) 384, 652
Hsp92II CATG 5 cut(s) 306, 449, 752, 1016, 1353
HspAI GCGC 1 cut(s) 1463
Kzo9I GATC 6 cut(s) 57, 337, 590, 1157, 1201, 1397
LguI GCTCTTC 1 cut(s) 773
LmnI GCTCC 6 cut(s) 51, 329, 491, 667, 961, 1353
Lsp1109I GCAGC 1 cut(s) 190
LweI GCATC 5 cut(s) 190, 235, 463, 613, 708
MaeI CTAG 6 cut(s) 200, 333, 348, 596, 621, 1466
MaeII ACGT 2 cut(s) 384, 652
MaeIII GTNAC 2 cut(s) 395, 1505
MalI GATC 6 cut(s) 59, 339, 592, 1159, 1203, 1399
MbiI CCGCTC 1 cut(s) 670
MboI GATC 6 cut(s) 57, 337, 590, 1157, 1201, 1397
MboII GAAGA 5 cut(s) 790, 835, 954, 980, 1508
MfeI CAATTG 1 cut(s) 1106
MflI RGATCY 2 cut(s) 590, 1201
MhlI GDGCHC 1 cut(s) 1101
MluCI AATT 6 cut(s) 215, 363, 737, 895, 1106, 1367
MlyI GAGTC 3 cut(s) 175, 908, 1469
MmeI TCCRAC 4 cut(s) 872, 939, 1016, 1084
MnlI CCTC 5 cut(s) 744, 1067, 1069, 1141, 1475
MroXI GAANNNNTTC 1 cut(s) 1420
MseI TTAA 7 cut(s) 134, 362, 714, 966, 1247, 1322, 1392
MslI CAYNNNNRTG 1 cut(s) 243
MspR9I CCNGG 3 cut(s) 78, 490, 585
MunI CAATTG 1 cut(s) 1106
MvaI CCWGG 3 cut(s) 78, 490, 585
MwoI GCNNNNNNNGC 4 cut(s) 290, 329, 789, 1043
NdeII GATC 6 cut(s) 57, 337, 590, 1157, 1201, 1397
NlaIII CATG 5 cut(s) 306, 449, 752, 1016, 1353
NlaIV GGNNCC 1 cut(s) 428
NmuCI GTSAC 2 cut(s) 395, 1505
PciSI GCTCTTC 1 cut(s) 773
PdmI GAANNNNTTC 1 cut(s) 1420
PflMI CCANNNNNTGG 1 cut(s) 1379
PkrI GCNGC 5 cut(s) 205, 226, 295, 412, 791
Ple19I CGATCG 1 cut(s) 1400
PleI GAGTC 3 cut(s) 174, 908, 1469
PpsI GAGTC 3 cut(s) 174, 908, 1469
PshBI ATTAAT 1 cut(s) 1392
Psp6I CCWGG 3 cut(s) 76, 488, 583
PspGI CCWGG 3 cut(s) 76, 488, 583
PspN4I GGNNCC 1 cut(s) 428
PspPI GGNCC 2 cut(s) 461, 1009
PstI CTGCAG 1 cut(s) 1132
PsuI RGATCY 2 cut(s) 590, 1201
PvuI CGATCG 1 cut(s) 1400
RsaI GTAC 3 cut(s) 639, 1119, 1218
RsaNI GTAC 3 cut(s) 638, 1118, 1217
RseI CAYNNNNRTG 1 cut(s) 243
SapI GCTCTTC 1 cut(s) 773
SaqAI TTAA 7 cut(s) 134, 362, 714, 966, 1247, 1322, 1392
SatI GCNGC 5 cut(s) 204, 225, 294, 411, 790
Sau3AI GATC 6 cut(s) 57, 337, 590, 1157, 1201, 1397
Sau96I GGNCC 2 cut(s) 461, 1009
SchI GAGTC 3 cut(s) 175, 908, 1469
ScrFI CCNGG 3 cut(s) 78, 490, 585
SduI GDGCHC 1 cut(s) 1101
SfaNI GCATC 5 cut(s) 190, 235, 463, 613, 708
SfcI CTRYAG 2 cut(s) 405, 1128
SinI GGWCC 2 cut(s) 461, 1009
SmiMI CAYNNNNRTG 1 cut(s) 243
Sse9I AATT 6 cut(s) 215, 363, 737, 895, 1106, 1367
SsiI CCGC 6 cut(s) 224, 293, 410, 670, 674, 789
SspMI CTAG 6 cut(s) 200, 333, 348, 596, 621, 1466
StyD4I CCNGG 3 cut(s) 76, 488, 583
StyI CCWWGG 3 cut(s) 430, 552, 661
TaaI ACNGT 4 cut(s) 53, 160, 957, 1140
TaiI ACGT 2 cut(s) 387, 655
TaqI TCGA 6 cut(s) 10, 60, 558, 576, 1396, 1436
TasI AATT 6 cut(s) 215, 363, 737, 895, 1106, 1367
TatI WGTACW 1 cut(s) 1216
TauI GCSGC 4 cut(s) 227, 296, 413, 792
Tru1I TTAA 7 cut(s) 134, 362, 714, 966, 1247, 1322, 1392
Tru9I TTAA 7 cut(s) 134, 362, 714, 966, 1247, 1322, 1392
TscAI CASTG 8 cut(s) 31, 165, 245, 295, 574, 618, 861, 938
TseFI GTSAC 2 cut(s) 395, 1505
TseI GCWGC 1 cut(s) 203
Tsp45I GTSAC 2 cut(s) 395, 1505
TspDTI ATGAA 9 cut(s) 17, 291, 342, 492, 737, 1029, 1338, 1413, 1515
TspGWI ACGGA 2 cut(s) 62, 754
TspRI CASTG 8 cut(s) 31, 165, 245, 295, 574, 618, 861, 938
Van91I CCANNNNNTGG 1 cut(s) 1379
VpaK11BI GGWCC 2 cut(s) 461, 1009
VspI ATTAAT 1 cut(s) 1392
XapI RAATTY 3 cut(s) 215, 895, 1367
XbaI TCTAGA 2 cut(s) 595, 620
XcmI CCANNNNNNNNNTGG 1 cut(s) 804
XmnI GAANNNNTTC 1 cut(s) 1420
XspI CTAG 6 cut(s) 200, 333, 348, 596, 621, 1466
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.