Rroxscaffold_2G00139340

isoform X1

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Reverse (-)
77782004 .. 77785634
3631 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00139340.1

Sequence Viewer

Length: 2088 bp
ATGTGCAGCCATTCAAATCTGACGAAGCTTCACCGTCTGATCGACGATTCTCTCCGTCCGTACACAGAACCAGATGTCGTTTCGGTAACGAAAGAGAGAGAAATTCTGGTCAGTCTCTCTCAGGTTCTTCGGCAAGTGAAGCTTTGGATTGGAGAAGTTGATTCCGATTCTGATAATGGAGTGGTGATTGGATTGGATTTTGAGAATGAGTGTATGTGTCTGAGTAAAATCTTAACTCACTTGATTGTTTTGCTAACAGTGGAGAGTCAATATGTGAAGCATCTGGCCTGCAATGTTCTAGCTGCTGTCTCCGAATTCGTGGCGGCTTCGGGAAGCCACTGGGATGCCTTTATTCGTTTGTTGTGTGATTGTATGGATTTGGCAATCACTGCGGCAGTTTCATGTTCTACATCAACTTTGGCAACTGGAGCTAGTGATCTTTGTTCTAGTTCATTGAGTTTAATTCTCGTGCTGAAACCTAAGGTGAAAAATGGTGACTGGTCTGTGGCGGCTGGTGTTGTTCGGGTGCTACGTGATATACTGAAGTATTTGAAGTCTGAGGATGATGAGGAACTTGTTGAAGTGTTCATTGAGGCTGTTAATTCTTTTCTTTCAACCGTGCCTTGGGATTTATTTCATCAGATTCGTGTTGGTTCAACTGCTGATGCTCTGAAATGGTCCAGGGCAGATGTTTCATTCCAAAGAACCTTGTTTCTAGGAAACTTGATTCAGTTTCTCTGTTCCTTGGTCGAGCAAGGTGGTGTTGTCGATGCTCCAGGTGGATCTCTAGACAAGCATCATCCAGTGTTTTCTAGAATCATCAATCTTGTACCTAAGCTTTTAAGTTTATGCCTTGGGGAGCAAGCGGATTGTGTTATCTCTAACAACTGCATCGCTCAATACTTTAAACACAAGTTATTGGTGCTAATGATCAGGCTCATTGTCCAAACTTGTCCAGAATCTTCAATTCTTGTTTCATGGTTGCAACTTATCCATTATTACTTTGAAGAGCTTTTACGGCAACCCATTTCTACTCTGGAGTGTAATCAGGAAGATTGTTTGGAAGGCTCTCCATTTCTATCCAGTGTTTCTGATTCAGAAGTAAATAGTCTGTCTTCTCGCCATCTGCAAAGACAGGCTGTGTTCCTTTTTCTGAGGGGTTCTTTTAGTTTGATTAACTCAAATGGAGGCACTAACAGAAAATGTGCTTGTGCAAGTTGGAATTTATGCTTGGACTATGACTCAAATGCAGAGTTACAGTGTTGTGGAAGAAAGGAAGGACTGTTGGCGCTTAATAACTGGCTTCAAGGACATCTTCCAACTGATATGTTAGTGGACCATGAAATGTATTTTGAGAAATGTGCTGACTTTGCCAAATCCTTCCTCCAACTATATATCAAAGAGGATGATTTATTATTCAGAGTGCTCTTGCAATTGCTTTGTGTACCTTGTCCTTCAGAGAAACAGTTTGAAGAGGAAAGGGGATCATTTCAGGATTCAAAGGGCGATGTGCTTTTCTTTGTCTCAGATCTTTTCAATCCTGTACTCTTATTCCATCTATTTCTTGTAGAGTTAAGCTATGATCATCAGGTGCTTCTTGATTACCTTATTTCAAAAGATACTGGAATCAGTTGTGCAGAATATCTTTTAAGGTGCTTGCGTAAAGTGTGTGATTCATGGAGCTTATTTGTGGAATTTCCACCGAGTGGACAAGCTATAAATCGATCATCTTGCAAGAAAAGAAAAGTTTCATTGAATGGGTCGAGTTTCTGTGGAGCAGATTTGTTTGCGCTAGTGAAAGACTCTGAAGGTTTGTTTCTTGAAGATGAATGTGACGATGAAAACAAATATGATTTCAAGCACACTCAAGAGAATTTCGAAAAAGCCAAAGAGTGCTTAATTTCGTTGAAAAATTCGATTGAATGTCTCCACCAAAAGAATCTATTTCCCTACAATCCTAATGCTCTTTTGAACCGGTGCGTGTCTTTGGTGGAGCTAATCTATGGAGCTATGGAGTTTATTGTTATTTTAAACAATAATGAACGTGAACTACTCAAACTGAACTTCTTGCTCTTGCTTGCAGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

695

Amino Acids

78.16

Weight (kDa)

5.06

Isoelectric Point (pI)

41.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LINES_N PF14694 449 - 565 2.2e-09 Lines N-terminus
LINES_C PF14695 629 - 659 4.5e-12 Lines C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1706
AciI CCGC 4 cut(s) 323, 392, 509, 866
AclWI GGATC 2 cut(s) 790, 1492
AcsI RAATTY 6 cut(s) 102, 314, 1222, 1694, 1873, 1912
AcuI CTGAAG 3 cut(s) 563, 1440, 1827
AdeI CACNNNGTG 1 cut(s) 1706
AfaI GTAC 4 cut(s) 62, 831, 1446, 1545
AfiI CCNNNNNNNGG 2 cut(s) 624, 1706
AgeI ACCGGT 1 cut(s) 1974
AjnI CCWGG 2 cut(s) 680, 775
AjuI GAANNNNNNNTTGG 2 cut(s) 1214, 1246
Alw21I GWGCWC 1 cut(s) 1428
Alw26I GTCTC 4 cut(s) 119, 313, 1528, 1931
AlwI GGATC 2 cut(s) 790, 1492
AoxI GGCC 1 cut(s) 285
ApeKI GCWGC 3 cut(s) 6, 302, 2081
ApoI RAATTY 6 cut(s) 102, 314, 1222, 1694, 1873, 1912
AsiGI ACCGGT 1 cut(s) 1974
Asp700I GAANNNNTTC 1 cut(s) 1747
AspLEI GCGC 2 cut(s) 1291, 1792
AspS9I GGNCC 2 cut(s) 678, 1336
AsuHPI GGTGA 4 cut(s) 23, 196, 496, 506
AsuII TTCGAA 1 cut(s) 1878
AvaII GGWCC 2 cut(s) 678, 1336
AxyI CCTNAGG 1 cut(s) 480
BarI GAAGNNNNNNTAC 2 cut(s) 999, 1031
BauI CACGAG 1 cut(s) 467
BbsI GAAGAC 1 cut(s) 1107
Bbv12I GWGCWC 1 cut(s) 1428
BbvI GCAGC 2 cut(s) 18, 289
BccI CCATC 2 cut(s) 1131, 1563
BceAI ACGGC 1 cut(s) 1034
BcgI CGANNNNNNTGC 2 cut(s) 1713, 1747
BciT130I CCWGG 2 cut(s) 682, 777
BclI TGATCA 2 cut(s) 930, 1582
BcoDI GTCTC 4 cut(s) 119, 313, 1528, 1931
BfaI CTAG 7 cut(s) 299, 432, 447, 716, 788, 813, 1793
BfoI RGCGCY 1 cut(s) 1292
BglII AGATCT 1 cut(s) 1528
BisI GCNGC 6 cut(s) 7, 303, 324, 393, 510, 2082
BlsI GCNGC 6 cut(s) 8, 304, 325, 394, 511, 2083
Bme1390I CCNGG 2 cut(s) 682, 777
Bme18I GGWCC 2 cut(s) 678, 1336
BmgT120I GGNCC 2 cut(s) 678, 1336
BmrFI CCNGG 2 cut(s) 682, 777
BmrI ACTGGG 1 cut(s) 349
BmsI GCATC 6 cut(s) 289, 334, 655, 760, 805, 900
BmuI ACTGGG 1 cut(s) 349
BpiI GAAGAC 1 cut(s) 1107
BpmI CTGGAG 3 cut(s) 447, 759, 1058
Bpu10I CCTNAGC 1 cut(s) 834
Bpu14I TTCGAA 1 cut(s) 1878
BpuEI CTTGAG 1 cut(s) 1851
Bsa29I ATCGAT 1 cut(s) 1723
BsaAI YACGTR 1 cut(s) 533
BsaJI CCNNGG 4 cut(s) 623, 681, 744, 853
BsaWI WCCGGW 1 cut(s) 1974
Bsc4I CCNNNNNNNGG 2 cut(s) 624, 1706
Bse118I RCCGGY 1 cut(s) 1974
Bse1I ACTGG 7 cut(s) 344, 430, 503, 803, 1083, 1304, 1627
Bse21I CCTNAGG 1 cut(s) 480
Bse3DI GCAATG 1 cut(s) 298
BseBI CCWGG 2 cut(s) 682, 777
BseCI ATCGAT 1 cut(s) 1723
BseDI CCNNGG 4 cut(s) 623, 681, 744, 853
BseGI GGATG 4 cut(s) 349, 568, 799, 1411
BseLI CCNNNNNNNGG 2 cut(s) 624, 1706
BseMI GCAATG 1 cut(s) 298
BseMII CTCAG 5 cut(s) 134, 212, 549, 1145, 1539
BseNI ACTGG 7 cut(s) 344, 430, 503, 803, 1083, 1304, 1627
BseXI GCAGC 2 cut(s) 18, 289
BsgI GTGCAG 2 cut(s) 25, 1656
BshFI GGCC 1 cut(s) 287
BshTI ACCGGT 1 cut(s) 1974
BshVI ATCGAT 1 cut(s) 1723
BsiHKAI GWGCWC 1 cut(s) 1428
BsiSI CCGG 1 cut(s) 1975
BslI CCNNNNNNNGG 2 cut(s) 624, 1706
BsmAI GTCTC 4 cut(s) 119, 313, 1528, 1931
BsnI GGCC 1 cut(s) 287
Bsp119I TTCGAA 1 cut(s) 1878
Bsp1286I GDGCHC 1 cut(s) 1428
Bsp143I GATC 8 cut(s) 39, 436, 782, 930, 1484, 1528, 1582, 1724
BspACI CCGC 4 cut(s) 323, 392, 509, 866
BspANI GGCC 1 cut(s) 287
BspCNI CTCAG 5 cut(s) 133, 213, 550, 1146, 1538
BspDI ATCGAT 1 cut(s) 1723
BspPI GGATC 2 cut(s) 790, 1492
BspQI GCTCTTC 1 cut(s) 1002
BspT104I TTCGAA 1 cut(s) 1878
BsrDI GCAATG 1 cut(s) 298
BsrFI RCCGGY 1 cut(s) 1974
BsrI ACTGG 7 cut(s) 344, 430, 503, 803, 1083, 1304, 1627
BssAI RCCGGY 1 cut(s) 1974
BssECI CCNNGG 4 cut(s) 623, 681, 744, 853
BssMI GATC 8 cut(s) 39, 436, 782, 930, 1484, 1528, 1582, 1724
BssSI CACGAG 1 cut(s) 467
BssT1I CCWWGG 3 cut(s) 623, 744, 853
Bst2BI CACGAG 1 cut(s) 467
Bst2UI CCWGG 2 cut(s) 682, 777
Bst4CI ACNGT 6 cut(s) 35, 259, 619, 1260, 1284, 1467
Bst6I CTCTTC 2 cut(s) 1002, 1467
BstAPI GCANNNNNTGC 1 cut(s) 389
BstBAI YACGTR 1 cut(s) 533
BstBI TTCGAA 1 cut(s) 1878
BstC8I GCNNGC 4 cut(s) 289, 864, 1658, 2079
BstDEI CTNAG 7 cut(s) 120, 221, 480, 558, 834, 1154, 1525
BstF5I GGATG 4 cut(s) 349, 568, 799, 1411
BstH2I RGCGCY 1 cut(s) 1292
BstHHI GCGC 2 cut(s) 1291, 1792
BstKTI GATC 8 cut(s) 42, 439, 785, 933, 1487, 1531, 1585, 1727
BstMAI GTCTC 4 cut(s) 119, 313, 1528, 1931
BstMBI GATC 8 cut(s) 39, 436, 782, 930, 1484, 1528, 1582, 1724
BstMWI GCNNNNNNNGC 5 cut(s) 139, 389, 428, 1018, 1370
BstNI CCWGG 2 cut(s) 682, 777
BstSCI CCNGG 2 cut(s) 680, 775
BstV1I GCAGC 2 cut(s) 18, 289
BstV2I GAAGAC 1 cut(s) 1107
BstX2I RGATCY 2 cut(s) 782, 1528
BstYI RGATCY 2 cut(s) 782, 1528
Bsu15I ATCGAT 1 cut(s) 1723
Bsu36I CCTNAGG 1 cut(s) 480
BsuRI GGCC 1 cut(s) 287
BsuTUI ATCGAT 1 cut(s) 1723
BtgZI GCGATG 2 cut(s) 877, 1521
BtsCI GGATG 4 cut(s) 349, 568, 799, 1411
BtsI GCAGTG 1 cut(s) 387
BtsIMutI CAGTG 6 cut(s) 264, 337, 387, 810, 1090, 1265
Cac8I GCNNGC 4 cut(s) 289, 864, 1658, 2079
CfoI GCGC 2 cut(s) 1291, 1792
Cfr10I RCCGGY 1 cut(s) 1974
Cfr13I GGNCC 2 cut(s) 678, 1336
ClaI ATCGAT 1 cut(s) 1723
Csp6I GTAC 4 cut(s) 61, 830, 1445, 1544
CspAI ACCGGT 1 cut(s) 1974
CviAII CATG 4 cut(s) 402, 978, 1340, 1677
CviQI GTAC 4 cut(s) 61, 830, 1445, 1544
DdeI CTNAG 7 cut(s) 120, 221, 480, 558, 834, 1154, 1525
DpnI GATC 8 cut(s) 41, 438, 784, 932, 1486, 1530, 1584, 1726
DpnII GATC 8 cut(s) 39, 436, 782, 930, 1484, 1528, 1582, 1724
DraI TTTAAA 2 cut(s) 907, 2031
DraIII CACNNNGTG 1 cut(s) 1706
Eam1104I CTCTTC 2 cut(s) 1002, 1467
EarI CTCTTC 2 cut(s) 1002, 1467
Eco130I CCWWGG 3 cut(s) 623, 744, 853
Eco47I GGWCC 2 cut(s) 678, 1336
Eco57I CTGAAG 3 cut(s) 563, 1440, 1827
Eco81I CCTNAGG 1 cut(s) 480
EcoRI GAATTC 1 cut(s) 314
EcoRII CCWGG 2 cut(s) 680, 775
EcoT14I CCWWGG 3 cut(s) 623, 744, 853
ErhI CCWWGG 3 cut(s) 623, 744, 853
FaeI CATG 4 cut(s) 405, 981, 1343, 1680
FalI AAGNNNNNCTT 4 cut(s) 126, 158, 1299, 1331
FatI CATG 4 cut(s) 401, 977, 1339, 1676
FbaI TGATCA 2 cut(s) 930, 1582
Fnu4HI GCNGC 6 cut(s) 7, 303, 324, 393, 510, 2082
FokI GGATG 4 cut(s) 356, 575, 786, 1418
Fsp4HI GCNGC 6 cut(s) 7, 303, 324, 393, 510, 2082
FspBI CTAG 7 cut(s) 299, 432, 447, 716, 788, 813, 1793
GlaI GCGC 2 cut(s) 1290, 1791
GluI GCNGC 6 cut(s) 7, 303, 324, 393, 510, 2082
GsuI CTGGAG 3 cut(s) 447, 759, 1058
HaeII RGCGCY 1 cut(s) 1292
HaeIII GGCC 1 cut(s) 287
HapII CCGG 1 cut(s) 1975
HhaI GCGC 2 cut(s) 1291, 1792
Hin1II CATG 4 cut(s) 405, 981, 1343, 1680
Hin6I GCGC 2 cut(s) 1289, 1790
HinP1I GCGC 2 cut(s) 1289, 1790
HindIII AAGCTT 3 cut(s) 26, 140, 836
HpaII CCGG 1 cut(s) 1975
HphI GGTGA 4 cut(s) 23, 196, 496, 506
Hpy166II GTNNAC 5 cut(s) 63, 1336, 1445, 1709, 2048
Hpy8I GTNNAC 5 cut(s) 63, 1336, 1445, 1709, 2048
Hpy99I CGWCG 1 cut(s) 47
HpyAV CCTTC 5 cut(s) 1058, 1271, 1390, 1464, 1802
HpyCH4III ACNGT 6 cut(s) 35, 259, 619, 1260, 1284, 1467
HpyCH4IV ACGT 2 cut(s) 532, 2044
HpyF10VI GCNNNNNNNGC 5 cut(s) 139, 389, 428, 1018, 1370
HpyF3I CTNAG 7 cut(s) 120, 221, 480, 558, 834, 1154, 1525
HpySE526I ACGT 2 cut(s) 532, 2044
Hsp92II CATG 4 cut(s) 405, 981, 1343, 1680
HspAI GCGC 2 cut(s) 1289, 1790
Ksp22I TGATCA 2 cut(s) 930, 1582
Kzo9I GATC 8 cut(s) 39, 436, 782, 930, 1484, 1528, 1582, 1724
LguI GCTCTTC 1 cut(s) 1002
LmnI GCTCC 7 cut(s) 428, 778, 859, 1680, 1775, 1993, 2006
Lsp1109I GCAGC 2 cut(s) 18, 289
LweI GCATC 6 cut(s) 289, 334, 655, 760, 805, 900
MaeI CTAG 7 cut(s) 299, 432, 447, 716, 788, 813, 1793
MaeII ACGT 2 cut(s) 532, 2044
MaeIII GTNAC 4 cut(s) 85, 494, 1254, 1832
MalI GATC 8 cut(s) 41, 438, 784, 932, 1486, 1530, 1584, 1726
MboI GATC 8 cut(s) 39, 436, 782, 930, 1484, 1528, 1582, 1724
MboII GAAGA 9 cut(s) 119, 954, 1019, 1064, 1107, 1281, 1307, 1484, 1835
MfeI CAATTG 1 cut(s) 1433
MflI RGATCY 2 cut(s) 782, 1528
MhlI GDGCHC 1 cut(s) 1428
MlyI GAGTC 3 cut(s) 274, 1235, 1796
MmeI TCCRAC 3 cut(s) 1199, 1343, 1411
MnlI CCTC 8 cut(s) 553, 562, 586, 1149, 1181, 1394, 1396, 1468
MroXI GAANNNNTTC 1 cut(s) 1747
MslI CAYNNNNRTG 1 cut(s) 342
MspI CCGG 1 cut(s) 1975
MspR9I CCNGG 2 cut(s) 682, 777
MunI CAATTG 1 cut(s) 1433
MvaI CCWGG 2 cut(s) 682, 777
MwoI GCNNNNNNNGC 5 cut(s) 139, 389, 428, 1018, 1370
NdeII GATC 8 cut(s) 39, 436, 782, 930, 1484, 1528, 1582, 1724
NlaIII CATG 4 cut(s) 405, 981, 1343, 1680
NmuCI GTSAC 2 cut(s) 494, 1832
NspV TTCGAA 1 cut(s) 1878
PciSI GCTCTTC 1 cut(s) 1002
PcsI WCGNNNNNNNCGW 1 cut(s) 529
PdmI GAANNNNTTC 1 cut(s) 1747
PflMI CCANNNNNTGG 1 cut(s) 1706
PinAI ACCGGT 1 cut(s) 1974
PkrI GCNGC 6 cut(s) 8, 304, 325, 394, 511, 2083
PleI GAGTC 3 cut(s) 273, 1235, 1796
PpsI GAGTC 3 cut(s) 273, 1235, 1796
Ppu21I YACGTR 1 cut(s) 533
Psp6I CCWGG 2 cut(s) 680, 775
PspGI CCWGG 2 cut(s) 680, 775
PspPI GGNCC 2 cut(s) 678, 1336
PsrI GAACNNNNNNTAC 2 cut(s) 2034, 2066
PsuI RGATCY 2 cut(s) 782, 1528
RsaI GTAC 4 cut(s) 62, 831, 1446, 1545
RsaNI GTAC 4 cut(s) 61, 830, 1445, 1544
RseI CAYNNNNRTG 1 cut(s) 342
SapI GCTCTTC 1 cut(s) 1002
SatI GCNGC 6 cut(s) 7, 303, 324, 393, 510, 2082
Sau3AI GATC 8 cut(s) 39, 436, 782, 930, 1484, 1528, 1582, 1724
Sau96I GGNCC 2 cut(s) 678, 1336
SchI GAGTC 3 cut(s) 274, 1235, 1796
ScrFI CCNGG 2 cut(s) 682, 777
SduI GDGCHC 1 cut(s) 1428
SfaNI GCATC 6 cut(s) 289, 334, 655, 760, 805, 900
SfuI TTCGAA 1 cut(s) 1878
SinI GGWCC 2 cut(s) 678, 1336
SmiMI CAYNNNNRTG 1 cut(s) 342
SmlI CTYRAG 1 cut(s) 1866
SmoI CTYRAG 1 cut(s) 1866
SsiI CCGC 4 cut(s) 323, 392, 509, 866
SspMI CTAG 7 cut(s) 299, 432, 447, 716, 788, 813, 1793
StyD4I CCNGG 2 cut(s) 680, 775
StyI CCWWGG 3 cut(s) 623, 744, 853
TaaI ACNGT 6 cut(s) 35, 259, 619, 1260, 1284, 1467
TaiI ACGT 2 cut(s) 535, 2047
TaqI TCGA 7 cut(s) 42, 750, 768, 1723, 1763, 1878, 1916
TatI WGTACW 1 cut(s) 1543
TauI GCSGC 3 cut(s) 326, 395, 512
TscAI CASTG 6 cut(s) 264, 344, 394, 810, 1090, 1265
TseFI GTSAC 2 cut(s) 494, 1832
TseI GCWGC 3 cut(s) 6, 302, 2081
Tsp45I GTSAC 2 cut(s) 494, 1832
TspGWI ACGGA 2 cut(s) 44, 48
TspRI CASTG 6 cut(s) 264, 344, 394, 810, 1090, 1265
Van91I CCANNNNNTGG 1 cut(s) 1706
VpaK11BI GGWCC 2 cut(s) 678, 1336
XapI RAATTY 6 cut(s) 102, 314, 1222, 1694, 1873, 1912
XbaI TCTAGA 2 cut(s) 787, 812
XcmI CCANNNNNNNNNTGG 1 cut(s) 1033
XmnI GAANNNNTTC 1 cut(s) 1747
XspI CTAG 7 cut(s) 299, 432, 447, 716, 788, 813, 1793
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.