Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000112.1

Orthogroup ID

OG0005021

Physical Location & Seq

Genomic Coordinates Reverse (-)

53630 .. 56280

Gene Structure 2651 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000112.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1443 bp

atgaagcgtcgattcaaaatgtgcagcgattcaaatctgacgaagctccaccctctgatcgacgattctctccgtccgtacacagtgatttgtgatcagggagtggtgattggattggattttgagaatgagttggagagtcaatatgtgaagcatctggcctgcaatgttctagctgctgtctccgaattcgtggcggcttcgggaagccactgggatgcctttattcgtttgttgtgtgattgtatggatttggcaatcactgcggcagtttcatgttctacatcgactttggcaactggagctagtgatctttgttctagttcattgagtttaattctcgtgctgaaacctaaggtgaaaaatggtgactggtctgtagcggctggtgttgtttgggtgctacgtgatatactgaagtatttgaagtctgaggatgatgacgagcttgttgaagtgttcattgaggctgttctaatgatcaggctcattgtccaaacttgtccagaatcctcaattcttgtttcatggttgcaacttatccattattactttgaagagcttttgcggcaacccatttctactctggagtgtaatcaggaagattgtttggaaggctctccatttctatccagtgtttctgattcagaagtaaatagtctgtcttctcgccatctgcaaagacaggctgtgttcctttttctgaggtgttcttttagtttgattaactcaaatggaggcactaacagaaaatgtgcttgtgcaagttggaatttatgcttggactatgactcaaatgcagagttgcagtgttgtggaagaaaggaaggactattggagcttaataactggcttcaaggacatcttccaactgatatgtttgtggaccatgaaatgtattttgaaaaatgtgcagactttgccaaatccttcctccaactacatatcaaagaggtgccccattctcatctgaattcactctatagttttgaaattttaagctatgaccatcaggtgcttcttgattaccttattacaaaagatactggaatcagttgtgcagaatatcttttaaggtgcttgcgtaaagtgtgtgattcatggagcttatttgtggaatttccaccgagtggacaagctattaatcgatcatcttgcaagaaaagaaaagtttcattgaatgggtcgagtttctgtggagcagatttgtttgcgctagtgaaagactctggaggtttgtttcttgaagatgaatgtgacgatgaaaacaaatatgatttcaagcacactcgagagaatttccaaaaagccaaagagtgcttaatttcgttgaaaaattcgattgaaagtctccaccaaaagaatctatttccctacaatcctaatgctcttttgaaccgcttaatgaggtttcaggaactctgtttcgaggaggaaaaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LINES_C LINES_N

Protein Analysis

480

Amino Acids

54.4

Weight (kDa)

5.16

Isoelectric Point (pI)

50.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005021)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50430 AT3G50430
fragaria_vesca	FvH4_1g14850
malus_domestica	MD06G1092200.v1.1 MD15G1276100.v1.1
prunus_persica	Prupe.5G239300_v2.0.a1 Prupe.7G141900_v2.0.a1 Prupe.7G141900_v2.0.a1
pyrus_communis	pycom06g08810 pycom15g23900 pycom15g23910
rosa_chinensis	RchiOBHm_Chr1g0329901 RchiOBHm_Chr2g0103811
rosa_laevigata	RLG00000017265 RLG00000029854
rosa_multiflora	Rmu_sc0000112.1_g000009 Rmu_sc0001286.1_g000019
rosa_roxburghii	Rroxscaffold_2G00139340 Rroxscaffold_4G00320520
rosa_rugosa	Rorug01G0084200 Rorug02G0117400
rosa_samantha	Rh1BG081300 Rh1DG105200 Rh2AG166500 Rh2CG172400
rosa_wichuraiana	Rw0G006900 Rw1G008080 Rw1G008130 Rw2G013040 Rw4G001250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	955
AccB7I	CCANNNNNTGG	1 cut(s)	1130
AciI	CCGC	5 cut(s)	197, 266, 383, 568, 1399
AcsI	RAATTY	7 cut(s)	188, 772, 973, 993, 1118, 1297, 1336
AcuI	CTGAAG	1 cut(s)	437
AdeI	CACNNNGTG	1 cut(s)	1130
AfaI	GTAC	1 cut(s)	80
AfiI	CCNNNNNNNGG	1 cut(s)	1130
AjuI	GAANNNNNNNTTGG	2 cut(s)	764, 796
AluBI	AGCT	9 cut(s)	46, 176, 305, 448, 562, 841, 1002, 1107, 1139
AluI	AGCT	9 cut(s)	46, 176, 305, 448, 562, 841, 1002, 1107, 1139
Alw26I	GTCTC	2 cut(s)	187, 1355
Ama87I	CYCGRG	1 cut(s)	1290
AoxI	GGCC	1 cut(s)	159
ApeKI	GCWGC	2 cut(s)	24, 176
ApoI	RAATTY	7 cut(s)	188, 772, 973, 993, 1118, 1297, 1336
AseI	ATTAAT	1 cut(s)	1143
Asp700I	GAANNNNTTC	1 cut(s)	1171
AspLEI	GCGC	1 cut(s)	1216
AspS9I	GGNCC	1 cut(s)	886
AsuHPI	GGTGA	3 cut(s)	118, 370, 380
AvaI	CYCGRG	1 cut(s)	1290
AvaII	GGWCC	1 cut(s)	886
AxyI	CCTNAGG	1 cut(s)	354
BaeGI	GKGCMC	1 cut(s)	960
BanI	GGYRCC	1 cut(s)	955
BauI	CACGAG	1 cut(s)	341
BbsI	GAAGAC	1 cut(s)	657
BbvI	GCAGC	2 cut(s)	36, 163
BccI	CCATC	2 cut(s)	681, 1017
BcgI	CGANNNNNNTGC	2 cut(s)	1137, 1171
BclI	TGATCA	2 cut(s)	94, 480
BcoDI	GTCTC	2 cut(s)	187, 1355
BfaI	CTAG	4 cut(s)	173, 306, 321, 1217
BfmI	CTRYAG	2 cut(s)	378, 982
BisI	GCNGC	6 cut(s)	25, 177, 198, 267, 384, 569
BlsI	GCNGC	6 cut(s)	26, 178, 199, 268, 385, 570
Bme18I	GGWCC	1 cut(s)	886
BmeT110I	CYCGRG	1 cut(s)	1290
BmgT120I	GGNCC	1 cut(s)	886
BmiI	GGNNCC	1 cut(s)	957
BmrI	ACTGGG	1 cut(s)	223
BmsI	GCATC	2 cut(s)	163, 208
BmuI	ACTGGG	1 cut(s)	223
BpiI	GAAGAC	1 cut(s)	657
BpmI	CTGGAG	3 cut(s)	321, 608, 1251
Bsa29I	ATCGAT	1 cut(s)	1147
BsaAI	YACGTR	1 cut(s)	407
BsaBI	GATNNNNATC	1 cut(s)	33
Bsc4I	CCNNNNNNNGG	1 cut(s)	1130
Bse1I	ACTGG	6 cut(s)	218, 304, 377, 633, 854, 1051
Bse21I	CCTNAGG	1 cut(s)	354
Bse3DI	GCAATG	1 cut(s)	172
Bse8I	GATNNNNATC	1 cut(s)	33
BseCI	ATCGAT	1 cut(s)	1147
BseGI	GGATG	2 cut(s)	223, 442
BseJI	GATNNNNATC	1 cut(s)	33
BseLI	CCNNNNNNNGG	1 cut(s)	1130
BseMI	GCAATG	1 cut(s)	172
BseMII	CTCAG	2 cut(s)	423, 695
BseNI	ACTGG	6 cut(s)	218, 304, 377, 633, 854, 1051
BseSI	GKGCMC	1 cut(s)	960
BseXI	GCAGC	2 cut(s)	36, 163
BsgI	GTGCAG	3 cut(s)	43, 933, 1080
BshFI	GGCC	1 cut(s)	161
BshNI	GGYRCC	1 cut(s)	955
BshVI	ATCGAT	1 cut(s)	1147
BsiHKCI	CYCGRG	1 cut(s)	1290
BslI	CCNNNNNNNGG	1 cut(s)	1130
BsmAI	GTCTC	2 cut(s)	187, 1355
BsnI	GGCC	1 cut(s)	161
BsoBI	CYCGRG	1 cut(s)	1290
Bsp1286I	GDGCHC	1 cut(s)	960
Bsp143I	GATC	5 cut(s)	57, 94, 310, 480, 1148
BspACI	CCGC	5 cut(s)	197, 266, 383, 568, 1399
BspANI	GGCC	1 cut(s)	161
BspCNI	CTCAG	2 cut(s)	424, 696
BspDI	ATCGAT	1 cut(s)	1147
BspLI	GGNNCC	1 cut(s)	957
BspQI	GCTCTTC	1 cut(s)	552
BspT107I	GGYRCC	1 cut(s)	955
BsrDI	GCAATG	1 cut(s)	172
BsrI	ACTGG	6 cut(s)	218, 304, 377, 633, 854, 1051
BssMI	GATC	5 cut(s)	57, 94, 310, 480, 1148
BssSI	CACGAG	1 cut(s)	341
Bst2BI	CACGAG	1 cut(s)	341
Bst4CI	ACNGT	1 cut(s)	85
Bst6I	CTCTTC	1 cut(s)	552
BstAPI	GCANNNNNTGC	2 cut(s)	263, 920
BstBAI	YACGTR	1 cut(s)	407
BstC8I	GCNNGC	2 cut(s)	163, 1082
BstDEI	CTNAG	3 cut(s)	354, 432, 704
BstF5I	GGATG	2 cut(s)	223, 442
BstHHI	GCGC	1 cut(s)	1216
BstKTI	GATC	5 cut(s)	60, 97, 313, 483, 1151
BstMAI	GTCTC	2 cut(s)	187, 1355
BstMBI	GATC	5 cut(s)	57, 94, 310, 480, 1148
BstMWI	GCNNNNNNNGC	4 cut(s)	263, 302, 568, 920
BstSFI	CTRYAG	2 cut(s)	378, 982
BstSLI	GKGCMC	1 cut(s)	960
BstV1I	GCAGC	2 cut(s)	36, 163
BstV2I	GAAGAC	1 cut(s)	657
Bsu15I	ATCGAT	1 cut(s)	1147
Bsu36I	CCTNAGG	1 cut(s)	354
BsuRI	GGCC	1 cut(s)	161
BsuTUI	ATCGAT	1 cut(s)	1147
BtsCI	GGATG	2 cut(s)	223, 442
BtsI	GCAGTG	2 cut(s)	261, 815
BtsIMutI	CAGTG	5 cut(s)	90, 211, 261, 640, 815
Cac8I	GCNNGC	2 cut(s)	163, 1082
CfoI	GCGC	1 cut(s)	1216
Cfr13I	GGNCC	1 cut(s)	886
ClaI	ATCGAT	1 cut(s)	1147
Csp6I	GTAC	1 cut(s)	79
CviAII	CATG	4 cut(s)	276, 528, 890, 1101
CviQI	GTAC	1 cut(s)	79
DdeI	CTNAG	3 cut(s)	354, 432, 704
DpnI	GATC	5 cut(s)	59, 96, 312, 482, 1150
DpnII	GATC	5 cut(s)	57, 94, 310, 480, 1148
DraIII	CACNNNGTG	1 cut(s)	1130
Eam1104I	CTCTTC	1 cut(s)	552
EarI	CTCTTC	1 cut(s)	552
Eco47I	GGWCC	1 cut(s)	886
Eco57I	CTGAAG	1 cut(s)	437
Eco81I	CCTNAGG	1 cut(s)	354
Eco88I	CYCGRG	1 cut(s)	1290
EcoRI	GAATTC	2 cut(s)	188, 973
FaeI	CATG	4 cut(s)	279, 531, 893, 1104
FalI	AAGNNNNNCTT	2 cut(s)	849, 881
FatI	CATG	4 cut(s)	275, 527, 889, 1100
FbaI	TGATCA	2 cut(s)	94, 480
Fnu4HI	GCNGC	6 cut(s)	25, 177, 198, 267, 384, 569
FokI	GGATG	2 cut(s)	230, 449
Fsp4HI	GCNGC	6 cut(s)	25, 177, 198, 267, 384, 569
FspBI	CTAG	4 cut(s)	173, 306, 321, 1217
GlaI	GCGC	1 cut(s)	1215
GluI	GCNGC	6 cut(s)	25, 177, 198, 267, 384, 569
GsuI	CTGGAG	3 cut(s)	321, 608, 1251
HaeIII	GGCC	1 cut(s)	161
HhaI	GCGC	1 cut(s)	1216
Hin1II	CATG	4 cut(s)	279, 531, 893, 1104
Hin6I	GCGC	1 cut(s)	1214
HinP1I	GCGC	1 cut(s)	1214
HphI	GGTGA	3 cut(s)	118, 370, 380
Hpy166II	GTNNAC	3 cut(s)	81, 886, 1133
Hpy188I	TCNGA	8 cut(s)	39, 57, 187, 433, 643, 649, 705, 972
Hpy188III	TCNNGA	9 cut(s)	204, 506, 587, 599, 1022, 1230, 1244, 1292, 1415
Hpy8I	GTNNAC	3 cut(s)	81, 886, 1133
Hpy99I	CGWCG	2 cut(s)	12, 65
HpyAV	CCTTC	3 cut(s)	608, 821, 940
HpyCH4III	ACNGT	1 cut(s)	85
HpyCH4IV	ACGT	1 cut(s)	406
HpyF10VI	GCNNNNNNNGC	4 cut(s)	263, 302, 568, 920
HpyF3I	CTNAG	3 cut(s)	354, 432, 704
HpySE526I	ACGT	1 cut(s)	406
Hsp92II	CATG	4 cut(s)	279, 531, 893, 1104
HspAI	GCGC	1 cut(s)	1214
Ksp22I	TGATCA	2 cut(s)	94, 480
Kzo9I	GATC	5 cut(s)	57, 94, 310, 480, 1148
LguI	GCTCTTC	1 cut(s)	552
LmnI	GCTCC	5 cut(s)	51, 302, 838, 1104, 1199
Lsp1109I	GCAGC	2 cut(s)	36, 163
LweI	GCATC	2 cut(s)	163, 208
MaeI	CTAG	4 cut(s)	173, 306, 321, 1217
MaeII	ACGT	1 cut(s)	406
MaeIII	GTNAC	2 cut(s)	368, 1256
MalI	GATC	5 cut(s)	59, 96, 312, 482, 1150
MboI	GATC	5 cut(s)	57, 94, 310, 480, 1148
MboII	GAAGA	6 cut(s)	569, 614, 657, 831, 857, 1259
MhlI	GDGCHC	1 cut(s)	960
MlyI	GAGTC	3 cut(s)	148, 785, 1220
MmeI	TCCRAC	4 cut(s)	114, 749, 893, 961
MroXI	GAANNNNTTC	1 cut(s)	1171
MseI	TTAA	8 cut(s)	335, 726, 843, 998, 1073, 1143, 1322, 1403
MslI	CAYNNNNRTG	1 cut(s)	216
MwoI	GCNNNNNNNGC	4 cut(s)	263, 302, 568, 920
NdeII	GATC	5 cut(s)	57, 94, 310, 480, 1148
NlaIII	CATG	4 cut(s)	279, 531, 893, 1104
NlaIV	GGNNCC	1 cut(s)	957
NmuCI	GTSAC	2 cut(s)	368, 1256
PaeR7I	CTCGAG	1 cut(s)	1290
PciSI	GCTCTTC	1 cut(s)	552
PdmI	GAANNNNTTC	1 cut(s)	1171
PfeI	GAWTC	8 cut(s)	12, 29, 65, 509, 644, 1050, 1097, 1363
PflMI	CCANNNNNTGG	1 cut(s)	1130
PkrI	GCNGC	6 cut(s)	26, 178, 199, 268, 385, 570
PleI	GAGTC	3 cut(s)	147, 785, 1220
PpsI	GAGTC	3 cut(s)	147, 785, 1220
Ppu21I	YACGTR	1 cut(s)	407
PshBI	ATTAAT	1 cut(s)	1143
PspN4I	GGNNCC	1 cut(s)	957
PspPI	GGNCC	1 cut(s)	886
RsaI	GTAC	1 cut(s)	80
RsaNI	GTAC	1 cut(s)	79
RseI	CAYNNNNRTG	1 cut(s)	216
SapI	GCTCTTC	1 cut(s)	552
SaqAI	TTAA	8 cut(s)	335, 726, 843, 998, 1073, 1143, 1322, 1403
SatI	GCNGC	6 cut(s)	25, 177, 198, 267, 384, 569
Sau3AI	GATC	5 cut(s)	57, 94, 310, 480, 1148
Sau96I	GGNCC	1 cut(s)	886
SchI	GAGTC	3 cut(s)	148, 785, 1220
SduI	GDGCHC	1 cut(s)	960
SfaNI	GCATC	2 cut(s)	163, 208
SfcI	CTRYAG	2 cut(s)	378, 982
Sfr274I	CTCGAG	1 cut(s)	1290
SinI	GGWCC	1 cut(s)	886
SlaI	CTCGAG	1 cut(s)	1290
SmiMI	CAYNNNNRTG	1 cut(s)	216
SmlI	CTYRAG	1 cut(s)	1290
SmoI	CTYRAG	1 cut(s)	1290
SsiI	CCGC	5 cut(s)	197, 266, 383, 568, 1399
SspMI	CTAG	4 cut(s)	173, 306, 321, 1217
TaaI	ACNGT	1 cut(s)	85
TaiI	ACGT	1 cut(s)	409
TaqI	TCGA	8 cut(s)	10, 60, 287, 1147, 1187, 1291, 1340, 1428
TauI	GCSGC	4 cut(s)	200, 269, 386, 571
TfiI	GAWTC	8 cut(s)	12, 29, 65, 509, 644, 1050, 1097, 1363
Tru1I	TTAA	8 cut(s)	335, 726, 843, 998, 1073, 1143, 1322, 1403
Tru9I	TTAA	8 cut(s)	335, 726, 843, 998, 1073, 1143, 1322, 1403
TscAI	CASTG	5 cut(s)	90, 218, 268, 640, 815
TseFI	GTSAC	2 cut(s)	368, 1256
TseI	GCWGC	2 cut(s)	24, 176
Tsp45I	GTSAC	2 cut(s)	368, 1256
TspGWI	ACGGA	2 cut(s)	62, 66
TspRI	CASTG	5 cut(s)	90, 218, 268, 640, 815
Van91I	CCANNNNNTGG	1 cut(s)	1130
VpaK11BI	GGWCC	1 cut(s)	886
VspI	ATTAAT	1 cut(s)	1143
XapI	RAATTY	7 cut(s)	188, 772, 973, 993, 1118, 1297, 1336
XcmI	CCANNNNNNNNNTGG	1 cut(s)	583
XhoI	CTCGAG	1 cut(s)	1290
XmnI	GAANNNNTTC	1 cut(s)	1171
XspI	CTAG	4 cut(s)	173, 306, 321, 1217

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.