Rh2AG166500

isoform X1

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
Physical Location & Seq
Forward (+)
15631216 .. 15634755
3540 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG166500.1

Sequence Viewer

Length: 2037 bp
ATGAAGCGTCGATTCAAAATGTGCAGCGATTCAAATCTGACGAAGCTACACCGTCTGATCGACGATTCTCTCCGTCCGTACACAGAACCAGATGTCGTTTCGGTAGCGAAAGAGAGAGAAATTCTGGTCAGTCTCTCTCAGATTCTTCGGCAAGTGAAGCTCTGGATTGGAGAAGTTGATTCCCATTCTGATAATGGAGTAGTGGTTGGATTGGATTGTGGCAATGAGTGTATGTGTCTGAGTAAAATCTTAACTCACTTGATTGTTTTGCTAACAGTGGAGAGTCAATATGTGAAGCATCTGGCCTGCAATGTTCTAGCTGTTGTCTCCGAATTCGTGGCGGCTTCCGGAAGCCACTGGGATGCCTTTATTCGTTTGTTGTGTGATTGTATGGATTTGGCAATCACTGCGGCAGTTTCATGTTCTACATCAACTTTGGCAACTGGAGCTAGTGATCTTTGTTTTAGTTCATTGAGTTTAATTCTCGTGCTAAAACCTAAGGTGAAAAATGGTGACTGGTCTGTAGCGGCTGGTGTTGTTCGGGCGCTACGTGATATACTGAAGTATTTGAAGTCTGAGGATGATGACGAACTTGTTGAAGTGTTCATTGAGGCTGTTAATTCTTTTCTTTCAACAGTGCCTTGGGATTTATTGCATGAGATTCGTGTTGGTCCAAATGCTGATGCCCTGAAATGCTCCAGGGCAGATGTTTCATTCCAAAGAACCTTGTTTCTAGGAAACTTGATTCAGTTTCTCTGTTCCTTGGTCGAGCAAGGCGGTGTTGTCGATGCTCCAGGTGGATCTCTAGACAAGCATCATCCAGTGTTTTCTAGAATCATCAATCTTGTACCTAAGCTTTTATGTTTATGCCTTGGGGAGCAAGCGGATTGTGTTATCTCTAACAACTGCATCTCTCAATACTTTAAACACAAGTTATTGGTGCTAATGATCAGGCTCATTGTCCAAACTTGTCCAGAATCCTCAATTCTTGTTTCATGGTTGCAACTTATCCATTATTTCTTTGAAGAGCTTTTGCGGCAACCCATTTCTACTCTGGAGTGTAATCAGGAAGATTGTTTGGAAGGCTCTCCATTTCTATCCAGTGTTTCTGATTCAGAAGTAAATAGTCTGTCTTCTCGCCATCTGCAAAGACAGGCTGTGTTCCTTTTTCTGAGGTGTTCTTTTAGTTTGATTAACTCAAATGGAGGCACTAACAGAAAATGTGCTTGTGCAAGTTGGAATTTATGCTTGGACTATGACTCAAATGCAGAGTTGCAGTGTTGTGGAAGAAAGGAAGGACTGTTGGAGCTTAATAACTGGCTTCAAGGACATCTTCCAACTGATATGTTAGTGGACCATGAAATGTATTTTGAAAAATGTGCAGACTTTGCCAAATCCTTCCTCCAACTATATATCAAAGAGGATGATGTATTATTCAGAGTGCTCTTGCAATTGCTTTGTGTACCTTGTCCTGCAGAGAAACAGTTTGAAGAGGAAAGGGGATCATTTCAGGATTCAAAGGGCAATGTGCTTTTCTTTGTCTCAGATCTTTTCAATCCTGTACTCTTATTCCATCTATTTCTTGTAGAGTTAAGCTATGACCATCAGGTGCTTCTTGATTACCTTATTTCAAAAGATACTGGAATCAGTTGTGCAGAATATCTTTTAAGGTGCTTGCGTAAAGTGTGTGATTCATGGAGCTTATTTGTGGAATTTCCACCGAGTGGACAAGCTATAAATCGATCATCTTGCAAGAAAAGAAAAGTTTCATTGAATGGGTCGAGTTTCTGTGGAGCAGATTTGTTTGTGCTAGTGAAAGACTCTGGAGGTTTGTTTCTTGAAGATGAATGTGATGATGAAAACAAATATGATTTCAAGCACACTCGAGAGAATTTCCAAAAAGCCAAAGAGTGCTTAATTTCGTTGAAAAATTCGATTGAAAGTCTCCACCAAAAGAATCTATTTCCCTACAATCCTAATGCTCTTTTGAACCGCTTAATGAGGTTTCAGGAACTCTGTTTTGAGGAGGAAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

678

Amino Acids

76.48

Weight (kDa)

5.34

Isoelectric Point (pI)

45.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LINES_N PF14694 434 - 571 4.2e-09 Lines N-terminus
LINES_C PF14695 635 - 671 4.2e-15 Lines C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1724
AccIII TCCGGA 1 cut(s) 347
AciI CCGC 7 cut(s) 341, 410, 527, 777, 884, 1036, 1993
AclWI GGATC 2 cut(s) 808, 1510
AcsI RAATTY 6 cut(s) 120, 332, 1240, 1712, 1891, 1930
AcuI CTGAAG 1 cut(s) 581
AdeI CACNNNGTG 1 cut(s) 1724
AfaI GTAC 4 cut(s) 80, 849, 1464, 1563
AfiI CCNNNNNNNGG 1 cut(s) 1724
AjnI CCWGG 2 cut(s) 698, 793
AjuI GAANNNNNNNTTGG 2 cut(s) 1232, 1264
Alw21I GWGCWC 1 cut(s) 1446
Alw26I GTCTC 4 cut(s) 137, 331, 1546, 1949
AlwI GGATC 2 cut(s) 808, 1510
Ama87I CYCGRG 1 cut(s) 1884
Aor13HI TCCGGA 1 cut(s) 347
AoxI GGCC 1 cut(s) 303
ApeKI GCWGC 1 cut(s) 24
ApoI RAATTY 6 cut(s) 120, 332, 1240, 1712, 1891, 1930
Asp700I GAANNNNTTC 1 cut(s) 1765
AspLEI GCGC 1 cut(s) 547
AspS9I GGNCC 2 cut(s) 671, 1354
AsuHPI GGTGA 2 cut(s) 514, 524
AvaI CYCGRG 1 cut(s) 1884
AvaII GGWCC 2 cut(s) 671, 1354
AxyI CCTNAGG 1 cut(s) 498
BauI CACGAG 1 cut(s) 485
BbsI GAAGAC 1 cut(s) 1125
Bbv12I GWGCWC 1 cut(s) 1446
BbvI GCAGC 1 cut(s) 36
BccI CCATC 3 cut(s) 1149, 1581, 1611
BcgI CGANNNNNNTGC 4 cut(s) 644, 678, 1731, 1765
BciT130I CCWGG 2 cut(s) 700, 795
BclI TGATCA 1 cut(s) 948
BcoDI GTCTC 4 cut(s) 137, 331, 1546, 1949
BfaI CTAG 6 cut(s) 317, 450, 734, 806, 831, 1811
BfmI CTRYAG 2 cut(s) 522, 1473
BfoI RGCGCY 1 cut(s) 548
BglII AGATCT 1 cut(s) 1546
BisI GCNGC 5 cut(s) 25, 342, 411, 528, 1037
BlsI GCNGC 5 cut(s) 26, 343, 412, 529, 1038
Bme1390I CCNGG 2 cut(s) 700, 795
Bme18I GGWCC 2 cut(s) 671, 1354
BmeT110I CYCGRG 1 cut(s) 1884
BmgT120I GGNCC 2 cut(s) 671, 1354
BmrFI CCNGG 2 cut(s) 700, 795
BmrI ACTGGG 1 cut(s) 367
BmsI GCATC 6 cut(s) 307, 352, 673, 778, 823, 918
BmuI ACTGGG 1 cut(s) 367
BpiI GAAGAC 1 cut(s) 1125
BpmI CTGGAG 5 cut(s) 465, 682, 777, 1076, 1845
Bpu10I CCTNAGC 1 cut(s) 852
Bsa29I ATCGAT 1 cut(s) 1741
BsaAI YACGTR 1 cut(s) 551
BsaBI GATNNNNATC 1 cut(s) 33
BsaJI CCNNGG 4 cut(s) 641, 699, 762, 871
BsaWI WCCGGW 1 cut(s) 347
BsaXI ACNNNNNCTCC 2 cut(s) 189, 219
Bsc4I CCNNNNNNNGG 1 cut(s) 1724
Bse1I ACTGG 7 cut(s) 362, 448, 521, 821, 1101, 1322, 1645
Bse21I CCTNAGG 1 cut(s) 498
Bse3DI GCAATG 3 cut(s) 229, 316, 1531
Bse8I GATNNNNATC 1 cut(s) 33
BseAI TCCGGA 1 cut(s) 347
BseBI CCWGG 2 cut(s) 700, 795
BseCI ATCGAT 1 cut(s) 1741
BseDI CCNNGG 4 cut(s) 641, 699, 762, 871
BseGI GGATG 4 cut(s) 367, 586, 817, 1429
BseJI GATNNNNATC 1 cut(s) 33
BseLI CCNNNNNNNGG 1 cut(s) 1724
BseMI GCAATG 3 cut(s) 229, 316, 1531
BseMII CTCAG 5 cut(s) 152, 230, 567, 1163, 1557
BseNI ACTGG 7 cut(s) 362, 448, 521, 821, 1101, 1322, 1645
BseXI GCAGC 1 cut(s) 36
BsgI GTGCAG 3 cut(s) 43, 1401, 1674
BshFI GGCC 1 cut(s) 305
BshVI ATCGAT 1 cut(s) 1741
BsiHKAI GWGCWC 1 cut(s) 1446
BsiHKCI CYCGRG 1 cut(s) 1884
BsiSI CCGG 1 cut(s) 348
BslI CCNNNNNNNGG 1 cut(s) 1724
BsmAI GTCTC 4 cut(s) 137, 331, 1546, 1949
BsnI GGCC 1 cut(s) 305
BsoBI CYCGRG 1 cut(s) 1884
Bsp1286I GDGCHC 1 cut(s) 1446
Bsp13I TCCGGA 1 cut(s) 347
Bsp143I GATC 7 cut(s) 57, 454, 800, 948, 1502, 1546, 1742
BspACI CCGC 7 cut(s) 341, 410, 527, 777, 884, 1036, 1993
BspANI GGCC 1 cut(s) 305
BspCNI CTCAG 5 cut(s) 151, 231, 568, 1164, 1556
BspDI ATCGAT 1 cut(s) 1741
BspEI TCCGGA 1 cut(s) 347
BspMAI CTGCAG 1 cut(s) 1477
BspPI GGATC 2 cut(s) 808, 1510
BspQI GCTCTTC 1 cut(s) 1020
BsrDI GCAATG 3 cut(s) 229, 316, 1531
BsrI ACTGG 7 cut(s) 362, 448, 521, 821, 1101, 1322, 1645
BssECI CCNNGG 4 cut(s) 641, 699, 762, 871
BssMI GATC 7 cut(s) 57, 454, 800, 948, 1502, 1546, 1742
BssSI CACGAG 1 cut(s) 485
BssT1I CCWWGG 3 cut(s) 641, 762, 871
Bst2BI CACGAG 1 cut(s) 485
Bst2UI CCWGG 2 cut(s) 700, 795
Bst4CI ACNGT 5 cut(s) 53, 277, 637, 1302, 1485
Bst6I CTCTTC 2 cut(s) 1020, 1485
BstAPI GCANNNNNTGC 2 cut(s) 407, 1388
BstBAI YACGTR 1 cut(s) 551
BstC8I GCNNGC 3 cut(s) 307, 882, 1676
BstDEI CTNAG 7 cut(s) 138, 239, 498, 576, 852, 1172, 1543
BstF5I GGATG 4 cut(s) 367, 586, 817, 1429
BstH2I RGCGCY 1 cut(s) 548
BstHHI GCGC 1 cut(s) 547
BstKTI GATC 7 cut(s) 60, 457, 803, 951, 1505, 1549, 1745
BstMAI GTCTC 4 cut(s) 137, 331, 1546, 1949
BstMBI GATC 7 cut(s) 57, 454, 800, 948, 1502, 1546, 1742
BstMWI GCNNNNNNNGC 5 cut(s) 157, 407, 446, 1036, 1388
BstNI CCWGG 2 cut(s) 700, 795
BstSCI CCNGG 2 cut(s) 698, 793
BstSFI CTRYAG 2 cut(s) 522, 1473
BstV1I GCAGC 1 cut(s) 36
BstV2I GAAGAC 1 cut(s) 1125
BstX2I RGATCY 2 cut(s) 800, 1546
BstYI RGATCY 2 cut(s) 800, 1546
Bsu15I ATCGAT 1 cut(s) 1741
Bsu36I CCTNAGG 1 cut(s) 498
BsuRI GGCC 1 cut(s) 305
BsuTUI ATCGAT 1 cut(s) 1741
BtsCI GGATG 4 cut(s) 367, 586, 817, 1429
BtsI GCAGTG 2 cut(s) 405, 1283
BtsIMutI CAGTG 7 cut(s) 282, 355, 405, 642, 828, 1108, 1283
Cac8I GCNNGC 3 cut(s) 307, 882, 1676
CfoI GCGC 1 cut(s) 547
Cfr13I GGNCC 2 cut(s) 671, 1354
ClaI ATCGAT 1 cut(s) 1741
Csp6I GTAC 4 cut(s) 79, 848, 1463, 1562
CviAII CATG 5 cut(s) 420, 656, 996, 1358, 1695
CviQI GTAC 4 cut(s) 79, 848, 1463, 1562
DdeI CTNAG 7 cut(s) 138, 239, 498, 576, 852, 1172, 1543
DpnI GATC 7 cut(s) 59, 456, 802, 950, 1504, 1548, 1744
DpnII GATC 7 cut(s) 57, 454, 800, 948, 1502, 1546, 1742
DraI TTTAAA 1 cut(s) 925
DraIII CACNNNGTG 1 cut(s) 1724
Eam1104I CTCTTC 2 cut(s) 1020, 1485
EarI CTCTTC 2 cut(s) 1020, 1485
Eco130I CCWWGG 3 cut(s) 641, 762, 871
Eco47I GGWCC 2 cut(s) 671, 1354
Eco57I CTGAAG 1 cut(s) 581
Eco81I CCTNAGG 1 cut(s) 498
Eco88I CYCGRG 1 cut(s) 1884
EcoRI GAATTC 1 cut(s) 332
EcoRII CCWGG 2 cut(s) 698, 793
EcoT14I CCWWGG 3 cut(s) 641, 762, 871
ErhI CCWWGG 3 cut(s) 641, 762, 871
FaeI CATG 5 cut(s) 423, 659, 999, 1361, 1698
FalI AAGNNNNNCTT 2 cut(s) 1317, 1349
FatI CATG 5 cut(s) 419, 655, 995, 1357, 1694
FbaI TGATCA 1 cut(s) 948
Fnu4HI GCNGC 5 cut(s) 25, 342, 411, 528, 1037
FokI GGATG 4 cut(s) 374, 593, 804, 1436
Fsp4HI GCNGC 5 cut(s) 25, 342, 411, 528, 1037
FspBI CTAG 6 cut(s) 317, 450, 734, 806, 831, 1811
GlaI GCGC 1 cut(s) 546
GluI GCNGC 5 cut(s) 25, 342, 411, 528, 1037
GsuI CTGGAG 5 cut(s) 465, 682, 777, 1076, 1845
HaeII RGCGCY 1 cut(s) 548
HaeIII GGCC 1 cut(s) 305
HapII CCGG 1 cut(s) 348
HhaI GCGC 1 cut(s) 547
Hin1II CATG 5 cut(s) 423, 659, 999, 1361, 1698
Hin6I GCGC 1 cut(s) 545
HinP1I GCGC 1 cut(s) 545
HindIII AAGCTT 1 cut(s) 854
HpaII CCGG 1 cut(s) 348
HphI GGTGA 2 cut(s) 514, 524
Hpy166II GTNNAC 4 cut(s) 81, 1354, 1463, 1727
Hpy8I GTNNAC 4 cut(s) 81, 1354, 1463, 1727
Hpy99I CGWCG 2 cut(s) 12, 65
HpyAV CCTTC 3 cut(s) 1076, 1289, 1408
HpyCH4III ACNGT 5 cut(s) 53, 277, 637, 1302, 1485
HpyCH4IV ACGT 1 cut(s) 550
HpyF10VI GCNNNNNNNGC 5 cut(s) 157, 407, 446, 1036, 1388
HpyF3I CTNAG 7 cut(s) 138, 239, 498, 576, 852, 1172, 1543
HpySE526I ACGT 1 cut(s) 550
Hsp92II CATG 5 cut(s) 423, 659, 999, 1361, 1698
HspAI GCGC 1 cut(s) 545
Kpn2I TCCGGA 1 cut(s) 347
Ksp22I TGATCA 1 cut(s) 948
Kzo9I GATC 7 cut(s) 57, 454, 800, 948, 1502, 1546, 1742
LguI GCTCTTC 1 cut(s) 1020
LmnI GCTCC 7 cut(s) 446, 701, 796, 877, 1306, 1698, 1793
Lsp1109I GCAGC 1 cut(s) 36
LweI GCATC 6 cut(s) 307, 352, 673, 778, 823, 918
MaeI CTAG 6 cut(s) 317, 450, 734, 806, 831, 1811
MaeII ACGT 1 cut(s) 550
MaeIII GTNAC 1 cut(s) 512
MalI GATC 7 cut(s) 59, 456, 802, 950, 1504, 1548, 1744
MboI GATC 7 cut(s) 57, 454, 800, 948, 1502, 1546, 1742
MboII GAAGA 8 cut(s) 137, 1037, 1082, 1125, 1299, 1325, 1502, 1853
MfeI CAATTG 1 cut(s) 1451
MflI RGATCY 2 cut(s) 800, 1546
MhlI GDGCHC 1 cut(s) 1446
MlyI GAGTC 3 cut(s) 292, 1253, 1814
MmeI TCCRAC 5 cut(s) 187, 1217, 1284, 1361, 1429
MroI TCCGGA 1 cut(s) 347
MroXI GAANNNNTTC 1 cut(s) 1765
MslI CAYNNNNRTG 1 cut(s) 360
MspI CCGG 1 cut(s) 348
MspR9I CCNGG 2 cut(s) 700, 795
MunI CAATTG 1 cut(s) 1451
MvaI CCWGG 2 cut(s) 700, 795
MwoI GCNNNNNNNGC 5 cut(s) 157, 407, 446, 1036, 1388
NdeII GATC 7 cut(s) 57, 454, 800, 948, 1502, 1546, 1742
NlaIII CATG 5 cut(s) 423, 659, 999, 1361, 1698
NmuCI GTSAC 1 cut(s) 512
PaeR7I CTCGAG 1 cut(s) 1884
PciSI GCTCTTC 1 cut(s) 1020
PcsI WCGNNNNNNNCGW 1 cut(s) 547
PdmI GAANNNNTTC 1 cut(s) 1765
PflMI CCANNNNNTGG 1 cut(s) 1724
PkrI GCNGC 5 cut(s) 26, 343, 412, 529, 1038
PleI GAGTC 3 cut(s) 291, 1253, 1814
PpsI GAGTC 3 cut(s) 291, 1253, 1814
Ppu21I YACGTR 1 cut(s) 551
Psp6I CCWGG 2 cut(s) 698, 793
PspGI CCWGG 2 cut(s) 698, 793
PspPI GGNCC 2 cut(s) 671, 1354
PstI CTGCAG 1 cut(s) 1477
PsuI RGATCY 2 cut(s) 800, 1546
RsaI GTAC 4 cut(s) 80, 849, 1464, 1563
RsaNI GTAC 4 cut(s) 79, 848, 1463, 1562
RseI CAYNNNNRTG 1 cut(s) 360
SapI GCTCTTC 1 cut(s) 1020
SatI GCNGC 5 cut(s) 25, 342, 411, 528, 1037
Sau3AI GATC 7 cut(s) 57, 454, 800, 948, 1502, 1546, 1742
Sau96I GGNCC 2 cut(s) 671, 1354
SchI GAGTC 3 cut(s) 292, 1253, 1814
ScrFI CCNGG 2 cut(s) 700, 795
SduI GDGCHC 1 cut(s) 1446
SfaNI GCATC 6 cut(s) 307, 352, 673, 778, 823, 918
SfcI CTRYAG 2 cut(s) 522, 1473
Sfr274I CTCGAG 1 cut(s) 1884
SinI GGWCC 2 cut(s) 671, 1354
SlaI CTCGAG 1 cut(s) 1884
SmiMI CAYNNNNRTG 1 cut(s) 360
SmlI CTYRAG 1 cut(s) 1884
SmoI CTYRAG 1 cut(s) 1884
SsiI CCGC 7 cut(s) 341, 410, 527, 777, 884, 1036, 1993
SspMI CTAG 6 cut(s) 317, 450, 734, 806, 831, 1811
StyD4I CCNGG 2 cut(s) 698, 793
StyI CCWWGG 3 cut(s) 641, 762, 871
TaaI ACNGT 5 cut(s) 53, 277, 637, 1302, 1485
TaiI ACGT 1 cut(s) 553
TaqI TCGA 8 cut(s) 10, 60, 768, 786, 1741, 1781, 1885, 1934
TatI WGTACW 1 cut(s) 1561
TauI GCSGC 4 cut(s) 344, 413, 530, 1039
TscAI CASTG 7 cut(s) 282, 362, 412, 642, 828, 1108, 1283
TseFI GTSAC 1 cut(s) 512
TseI GCWGC 1 cut(s) 24
Tsp45I GTSAC 1 cut(s) 512
TspGWI ACGGA 2 cut(s) 62, 66
TspRI CASTG 7 cut(s) 282, 362, 412, 642, 828, 1108, 1283
Van91I CCANNNNNTGG 1 cut(s) 1724
VpaK11BI GGWCC 2 cut(s) 671, 1354
XapI RAATTY 6 cut(s) 120, 332, 1240, 1712, 1891, 1930
XbaI TCTAGA 2 cut(s) 805, 830
XcmI CCANNNNNNNNNTGG 2 cut(s) 191, 1051
XhoI CTCGAG 1 cut(s) 1884
XmnI GAANNNNTTC 1 cut(s) 1765
XspI CTAG 6 cut(s) 317, 450, 734, 806, 831, 1811
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.