MD06G1146500.v1.1

Mitochondrial 28S ribosomal protein S34

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0009129
Physical Location & Seq
Reverse (-)
28912553 .. 28912897
345 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1146500.v1.1.491

Sequence Viewer

Length: 345 bp
ATGGATCGAACCGGAGGCCTCTGGAGGATCGCATCGAACTTCCTCAGAAGCTTCAGCACCGCTTCCCAAAACCCAACTTCCGCCACCGGTTCTTCTTCGGCTTCAAAGAAACCCAAGCGGAAGAAGAAGAAGAAGAACCTTTTCGAGGTAGCCCAGTTTCTTCCCAATTGGGGATTGGGGTACCGAATGGCTAAGACCCACTGGGTCGGCGTCTCTTACCAGATTATCAATCTTTACAAGGTATTGATTGCTATCAAATTTTCCCAGATTTTGTTGGGTTTTTGGGTAGGAGGGGAAGAAGCTTCTTTTTTTTTTTTCCTTTTGTTTTTGTTTTTAATCGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MRP-S34

Protein Analysis

115

Amino Acids

12.98

Weight (kDa)

10.53

Isoelectric Point (pI)

21.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 180
AccB1I GGYRCC 1 cut(s) 180
AciI CCGC 3 cut(s) 60, 81, 118
AclWI GGATC 2 cut(s) 12, 35
AcsI RAATTY 1 cut(s) 257
AcuI CTGAAG 1 cut(s) 37
AcyI GRCGYC 1 cut(s) 210
AfaI GTAC 1 cut(s) 182
AfiI CCNNNNNNNGG 2 cut(s) 145, 170
AgeI ACCGGT 1 cut(s) 86
AgsI TTSAA 1 cut(s) 105
AluBI AGCT 2 cut(s) 51, 302
AluI AGCT 2 cut(s) 51, 302
Alw26I GTCTC 1 cut(s) 217
AlwI GGATC 2 cut(s) 12, 35
AoxI GGCC 1 cut(s) 16
ApoI RAATTY 1 cut(s) 257
AsiGI ACCGGT 1 cut(s) 86
Asp700I GAANNNNTTC 1 cut(s) 140
Asp718I GGTACC 1 cut(s) 180
BanI GGYRCC 1 cut(s) 180
BcoDI GTCTC 1 cut(s) 217
BmiI GGNNCC 1 cut(s) 182
BmrI ACTGGG 2 cut(s) 148, 211
BmsI GCATC 1 cut(s) 41
BmuI ACTGGG 2 cut(s) 148, 211
BpmI CTGGAG 1 cut(s) 43
BsaBI GATNNNNATC 1 cut(s) 251
BsaHI GRCGYC 1 cut(s) 210
BsaWI WCCGGW 2 cut(s) 11, 86
Bsc4I CCNNNNNNNGG 2 cut(s) 145, 170
Bse118I RCCGGY 1 cut(s) 86
Bse1I ACTGG 2 cut(s) 154, 206
Bse8I GATNNNNATC 1 cut(s) 251
BseJI GATNNNNATC 1 cut(s) 251
BseLI CCNNNNNNNGG 2 cut(s) 145, 170
BseMII CTCAG 1 cut(s) 58
BseNI ACTGG 2 cut(s) 154, 206
BshFI GGCC 1 cut(s) 18
BshNI GGYRCC 1 cut(s) 180
BshTI ACCGGT 1 cut(s) 86
BsiSI CCGG 2 cut(s) 12, 87
BslI CCNNNNNNNGG 2 cut(s) 145, 170
BsmAI GTCTC 1 cut(s) 217
BsmBI CGTCTC 1 cut(s) 217
BsnI GGCC 1 cut(s) 18
Bsp143I GATC 2 cut(s) 4, 27
BspACI CCGC 3 cut(s) 60, 81, 118
BspANI GGCC 1 cut(s) 18
BspCNI CTCAG 1 cut(s) 57
BspLI GGNNCC 1 cut(s) 182
BspPI GGATC 2 cut(s) 12, 35
BspT107I GGYRCC 1 cut(s) 180
BsrFI RCCGGY 1 cut(s) 86
BsrI ACTGG 2 cut(s) 154, 206
BssAI RCCGGY 1 cut(s) 86
BssMI GATC 2 cut(s) 4, 27
BssNI GRCGYC 1 cut(s) 210
BstACI GRCGYC 1 cut(s) 210
BstDEI CTNAG 2 cut(s) 44, 192
BstENI CCTNNNNNAGG 1 cut(s) 143
BstKTI GATC 2 cut(s) 7, 30
BstMAI GTCTC 1 cut(s) 217
BstMBI GATC 2 cut(s) 4, 27
BsuRI GGCC 1 cut(s) 18
BtsIMutI CAGTG 1 cut(s) 199
Cfr10I RCCGGY 1 cut(s) 86
CseI GACGC 1 cut(s) 199
Csp6I GTAC 1 cut(s) 181
CspAI ACCGGT 1 cut(s) 86
CviJI RGCY 6 cut(s) 18, 51, 101, 152, 191, 302
CviKI_1 RGCY 6 cut(s) 18, 51, 101, 152, 191, 302
CviQI GTAC 1 cut(s) 181
DdeI CTNAG 2 cut(s) 44, 192
DpnI GATC 2 cut(s) 6, 29
DpnII GATC 2 cut(s) 4, 27
EciI GGCGGA 1 cut(s) 70
Eco147I AGGCCT 1 cut(s) 18
Eco57I CTGAAG 1 cut(s) 37
EcoNI CCTNNNNNAGG 1 cut(s) 143
Esp3I CGTCTC 1 cut(s) 217
FaiI YATR 1 cut(s) 343
GsuI CTGGAG 1 cut(s) 43
HaeIII GGCC 1 cut(s) 18
HapII CCGG 2 cut(s) 12, 87
HgaI GACGC 1 cut(s) 199
Hin1I GRCGYC 1 cut(s) 210
HindIII AAGCTT 2 cut(s) 49, 300
HpaII CCGG 2 cut(s) 12, 87
Hpy188I TCNGA 1 cut(s) 47
Hpy188III TCNNGA 1 cut(s) 22
HpyF3I CTNAG 2 cut(s) 44, 192
Hsp92I GRCGYC 1 cut(s) 210
KpnI GGTACC 1 cut(s) 184
Kzo9I GATC 2 cut(s) 4, 27
LpnPI CCDG 7 cut(s) 7, 25, 100, 167, 187, 233, 278
LweI GCATC 1 cut(s) 41
MalI GATC 2 cut(s) 6, 29
MboI GATC 2 cut(s) 4, 27
MboII GAAGA 9 cut(s) 84, 87, 133, 136, 139, 142, 145, 152, 308
MfeI CAATTG 1 cut(s) 166
MluCI AATT 2 cut(s) 166, 257
MnlI CCTC 6 cut(s) 8, 18, 29, 53, 139, 284
MroXI GAANNNNTTC 1 cut(s) 140
MseI TTAA 1 cut(s) 335
MspI CCGG 2 cut(s) 12, 87
MunI CAATTG 1 cut(s) 166
NdeII GATC 2 cut(s) 4, 27
NlaIV GGNNCC 1 cut(s) 182
PceI AGGCCT 1 cut(s) 18
PdmI GAANNNNTTC 1 cut(s) 140
PinAI ACCGGT 1 cut(s) 86
PspN4I GGNNCC 1 cut(s) 182
RsaI GTAC 1 cut(s) 182
RsaNI GTAC 1 cut(s) 181
SaqAI TTAA 1 cut(s) 335
Sau3AI GATC 2 cut(s) 4, 27
SetI ASST 5 cut(s) 53, 141, 150, 243, 304
SfaNI GCATC 1 cut(s) 41
Sse9I AATT 2 cut(s) 166, 257
SseBI AGGCCT 1 cut(s) 18
SsiI CCGC 3 cut(s) 60, 81, 118
StuI AGGCCT 1 cut(s) 18
TaqI TCGA 3 cut(s) 7, 35, 144
TasI AATT 2 cut(s) 166, 257
Tru1I TTAA 1 cut(s) 335
Tru9I TTAA 1 cut(s) 335
TscAI CASTG 1 cut(s) 206
TspRI CASTG 1 cut(s) 206
XagI CCTNNNNNAGG 1 cut(s) 143
XapI RAATTY 1 cut(s) 257
XcmI CCANNNNNNNNNTGG 1 cut(s) 172
XmnI GAANNNNTTC 1 cut(s) 140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.