Rh7BG147000

Mitochondrial 28S ribosomal protein S34

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0009129
Physical Location & Seq
Forward (+)
10938153 .. 10940663
2511 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG147000.1

Sequence Viewer

Length: 342 bp
ATGAGAAAGAGGTGGTGGTTGCTGCCAGGGCAGCTACAACTGAATTTGTTGCAGATCCGCCTGTGGCTTTTCATGAAAGCACAAACACTACAGTTGAAATCCGCCTGTGGCCTAGACATAAGTGGTTGTGAATCACCGATAGAGGATGGTAGGCATGGAAAGGCTTGGGGAGTCGTTCATAAGGAAGGCTTGCCAGCTGCAGATGCTCCCAAGAAAATAAGTAGAGTCCACAAGCGTGGTTGGAGGTACATTCCAAGCTTATCTAAGTTGACTGAAAGTGTTCCAAGTGTGAGTAAACCAACTGAAACTGCTCCAGCAACACCTGAAGTTCAACCAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MRP-S34

Protein Analysis

113

Amino Acids

12.62

Weight (kDa)

9.94

Isoelectric Point (pI)

74.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 58, 102
AclWI GGATC 1 cut(s) 49
AcsI RAATTY 1 cut(s) 43
AfaI GTAC 1 cut(s) 248
AgsI TTSAA 2 cut(s) 97, 332
AjnI CCWGG 1 cut(s) 25
AleI CACNNNNGTG 1 cut(s) 234
AluBI AGCT 4 cut(s) 34, 197, 258, 338
AluI AGCT 4 cut(s) 34, 197, 258, 338
AlwI GGATC 1 cut(s) 49
AoxI GGCC 1 cut(s) 109
ApeKI GCWGC 3 cut(s) 22, 31, 197
ApoI RAATTY 1 cut(s) 43
Asp700I GAANNNNTTC 1 cut(s) 279
AsuHPI GGTGA 1 cut(s) 126
BbvI GCAGC 3 cut(s) 9, 43, 184
BccI CCATC 1 cut(s) 140
BciT130I CCWGG 1 cut(s) 27
BfaI CTAG 1 cut(s) 113
BfmI CTRYAG 2 cut(s) 89, 198
BisI GCNGC 3 cut(s) 23, 32, 198
BlsI GCNGC 3 cut(s) 24, 33, 199
Bme1390I CCNGG 1 cut(s) 27
BmrFI CCNGG 1 cut(s) 27
BmsI GCATC 1 cut(s) 193
BpmI CTGGAG 1 cut(s) 297
BsaJI CCNNGG 1 cut(s) 26
BseBI CCWGG 1 cut(s) 27
BseDI CCNNGG 1 cut(s) 26
BseGI GGATG 1 cut(s) 151
BseXI GCAGC 3 cut(s) 9, 43, 184
BshFI GGCC 1 cut(s) 111
BsnI GGCC 1 cut(s) 111
Bsp143I GATC 1 cut(s) 54
BspACI CCGC 2 cut(s) 58, 102
BspANI GGCC 1 cut(s) 111
BspHI TCATGA 1 cut(s) 72
BspMAI CTGCAG 1 cut(s) 202
BspPI GGATC 1 cut(s) 49
BssECI CCNNGG 1 cut(s) 26
BssMI GATC 1 cut(s) 54
Bst2UI CCWGG 1 cut(s) 27
Bst4CI ACNGT 1 cut(s) 93
BstC8I GCNNGC 2 cut(s) 191, 195
BstDEI CTNAG 1 cut(s) 264
BstF5I GGATG 1 cut(s) 151
BstKTI GATC 1 cut(s) 57
BstMBI GATC 1 cut(s) 54
BstMWI GCNNNNNNNGC 3 cut(s) 28, 31, 203
BstNI CCWGG 1 cut(s) 27
BstSCI CCNGG 1 cut(s) 25
BstSFI CTRYAG 2 cut(s) 89, 198
BstV1I GCAGC 3 cut(s) 9, 43, 184
BstX2I RGATCY 1 cut(s) 54
BstXI CCANNNNNNTGG 1 cut(s) 236
BstYI RGATCY 1 cut(s) 54
BsuRI GGCC 1 cut(s) 111
BtsCI GGATG 1 cut(s) 151
Cac8I GCNNGC 2 cut(s) 191, 195
CciI TCATGA 1 cut(s) 72
Csp6I GTAC 1 cut(s) 247
CviAII CATG 2 cut(s) 73, 155
CviJI RGCY 8 cut(s) 34, 67, 111, 164, 189, 197, 258, 338
CviKI_1 RGCY 8 cut(s) 34, 67, 111, 164, 189, 197, 258, 338
CviQI GTAC 1 cut(s) 247
DdeI CTNAG 1 cut(s) 264
DpnI GATC 1 cut(s) 56
DpnII GATC 1 cut(s) 54
EciI GGCGGA 2 cut(s) 47, 91
EcoRII CCWGG 1 cut(s) 25
FaeI CATG 2 cut(s) 76, 158
FaiI YATR 4 cut(s) 74, 119, 156, 180
FalI AAGNNNNNCTT 2 cut(s) 173, 205
FatI CATG 2 cut(s) 72, 154
Fnu4HI GCNGC 3 cut(s) 23, 32, 198
FokI GGATG 1 cut(s) 158
Fsp4HI GCNGC 3 cut(s) 23, 32, 198
FspBI CTAG 1 cut(s) 113
GluI GCNGC 3 cut(s) 23, 32, 198
GsuI CTGGAG 1 cut(s) 297
HaeIII GGCC 1 cut(s) 111
Hin1II CATG 2 cut(s) 76, 158
HincII GTYRAC 1 cut(s) 270
HindII GTYRAC 1 cut(s) 270
HindIII AAGCTT 1 cut(s) 256
HinfI GANTC 3 cut(s) 131, 171, 225
HphI GGTGA 1 cut(s) 126
Hpy166II GTNNAC 3 cut(s) 229, 270, 296
Hpy188III TCNNGA 1 cut(s) 73
Hpy8I GTNNAC 3 cut(s) 229, 270, 296
HpyAV CCTTC 1 cut(s) 179
HpyCH4III ACNGT 1 cut(s) 93
HpyCH4V TGCA 2 cut(s) 52, 200
HpyF10VI GCNNNNNNNGC 3 cut(s) 28, 31, 203
HpyF3I CTNAG 1 cut(s) 264
Hsp92II CATG 2 cut(s) 76, 158
Kzo9I GATC 1 cut(s) 54
LmnI GCTCC 2 cut(s) 211, 316
LpnPI CCDG 7 cut(s) 12, 39, 74, 118, 207, 327, 336
Lsp1109I GCAGC 3 cut(s) 9, 43, 184
LweI GCATC 1 cut(s) 193
MaeI CTAG 1 cut(s) 113
MalI GATC 1 cut(s) 56
MboI GATC 1 cut(s) 54
MflI RGATCY 1 cut(s) 54
MluCI AATT 1 cut(s) 43
MlyI GAGTC 2 cut(s) 180, 234
MmeI TCCRAC 1 cut(s) 221
MnlI CCTC 3 cut(s) 3, 136, 237
MroXI GAANNNNTTC 1 cut(s) 279
MslI CAYNNNNRTG 1 cut(s) 234
MspA1I CMGCKG 1 cut(s) 197
MspR9I CCNGG 1 cut(s) 27
MvaI CCWGG 1 cut(s) 27
MwoI GCNNNNNNNGC 3 cut(s) 28, 31, 203
NdeII GATC 1 cut(s) 54
NlaIII CATG 2 cut(s) 76, 158
OliI CACNNNNGTG 1 cut(s) 234
PagI TCATGA 1 cut(s) 72
PdmI GAANNNNTTC 1 cut(s) 279
PfeI GAWTC 1 cut(s) 131
PkrI GCNGC 3 cut(s) 24, 33, 199
PleI GAGTC 2 cut(s) 179, 233
PpsI GAGTC 2 cut(s) 179, 233
Psp6I CCWGG 1 cut(s) 25
PspGI CCWGG 1 cut(s) 25
PstI CTGCAG 1 cut(s) 202
PsuI RGATCY 1 cut(s) 54
PvuII CAGCTG 1 cut(s) 197
RsaI GTAC 1 cut(s) 248
RsaNI GTAC 1 cut(s) 247
RseI CAYNNNNRTG 1 cut(s) 234
SatI GCNGC 3 cut(s) 23, 32, 198
Sau3AI GATC 1 cut(s) 54
SchI GAGTC 2 cut(s) 180, 234
ScrFI CCNGG 1 cut(s) 27
SetI ASST 7 cut(s) 14, 36, 199, 248, 260, 325, 340
SfaNI GCATC 1 cut(s) 193
SfcI CTRYAG 2 cut(s) 89, 198
SmiMI CAYNNNNRTG 1 cut(s) 234
Sse9I AATT 1 cut(s) 43
SsiI CCGC 2 cut(s) 58, 102
SspMI CTAG 1 cut(s) 113
StyD4I CCNGG 1 cut(s) 25
TaaI ACNGT 1 cut(s) 93
TasI AATT 1 cut(s) 43
TfiI GAWTC 1 cut(s) 131
TseI GCWGC 3 cut(s) 22, 31, 197
TspDTI ATGAA 3 cut(s) 61, 89, 167
XapI RAATTY 1 cut(s) 43
XmnI GAANNNNTTC 1 cut(s) 279
XspI CTAG 1 cut(s) 113
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.