Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0009129

Physical Location & Seq

Genomic Coordinates Forward (+)

4501910 .. 4504256

Gene Structure 2347 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G065000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGGCGAGCAATCTCGCAAACAGAGCAGTAACGGATCGAACCATAAAACTATGGAGGCTCACATCGAGCTTCCTCAGAAACTTCAGCACTGCTTCCGAAAGCCCTTCTGCTGCTGCTGCTTCTCCTTCTTCTTCGGCTTCGAAGAAACCCAAGCGCAAGAAGAAGAAGAACCTGTTTGAGGTGGCTCAGTTTTTGCCCAACTGGGGATTAGGGTACCAAATGGCTAAGACTCACTGGGTCGGCGTCTCTTACCAGATCACCAAAATCAATCTTTACAAGGACGGTAGACATGGCAAAGCATGGGGCATCGTTCATAAGGAAGGCTTGCCAGCTGCAGATGCTCCCAAGAAAATAAGTGGAGTCCACAAGCGTGGTTGGAGGTACATTCCAAACTCAAAGTCGCCTGAAAGTGTTCCAAGTGTGACTAAACCTACAGAAAGTGCTCCAGCAGCTGAAGTTCAAGCAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MRP-S34

Protein Analysis

157

Amino Acids

17.05

Weight (kDa)

10.41

Isoelectric Point (pI)

42.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009129)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52370 AT5G58990
fragaria_vesca	FvH4_3g37450
malus_domestica	MD03G1080100.v1.1 MD06G1146500.v1.1 MD11G1084700.v1.1
prunus_persica	Prupe.6G065000_v2.0.a1
pyrus_communis	pycom03g06410 pycom11g07320
rosa_chinensis	RchiOBHm_Chr5g0067341
rosa_laevigata	RLG00000035928
rosa_multiflora	Rmu_sc0042776.1_g000001 Rmu_ssc0000354.1_g000003
rosa_roxburghii	Rroxscaffold_1G00013740
rosa_rugosa	Rorug05G0384400
rosa_samantha	Rh2BG264800 Rh5AG443800 Rh5BG221200 Rh5BG460800 Rh5CG483100 Rh7BG147000
rosa_wichuraiana	Rw5G041450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	213
AccB1I	GGYRCC	1 cut(s)	213
AccI	GTMKAC	1 cut(s)	286
AclWI	GGATC	1 cut(s)	42
AcuI	CTGAAG	1 cut(s)	67
AcyI	GRCGYC	1 cut(s)	243
AfaI	GTAC	2 cut(s)	215, 383
AfiI	CCNNNNNNNGG	2 cut(s)	178, 203
AgsI	TTSAA	1 cut(s)	461
AleI	CACNNNNGTG	1 cut(s)	369
AluBI	AGCT	4 cut(s)	69, 332, 452, 467
AluI	AGCT	4 cut(s)	69, 332, 452, 467
Alw21I	GWGCWC	1 cut(s)	445
Alw26I	GTCTC	1 cut(s)	250
AlwI	GGATC	1 cut(s)	42
AlwNI	CAGNNNCTG	1 cut(s)	452
ApeKI	GCWGC	6 cut(s)	110, 113, 116, 332, 449, 464
ArsI	GACNNNNNNTTYG	2 cut(s)	383, 415
Asp700I	GAANNNNTTC	1 cut(s)	411
Asp718I	GGTACC	1 cut(s)	213
AspLEI	GCGC	1 cut(s)	156
AsuHPI	GGTGA	1 cut(s)	250
AsuII	TTCGAA	1 cut(s)	140
BanI	GGYRCC	1 cut(s)	213
Bbv12I	GWGCWC	1 cut(s)	445
BbvI	GCAGC	5 cut(s)	97, 100, 103, 319, 461
BcoDI	GTCTC	1 cut(s)	250
BfmI	CTRYAG	2 cut(s)	333, 432
BisI	GCNGC	6 cut(s)	111, 114, 117, 333, 450, 465
BlsI	GCNGC	6 cut(s)	112, 115, 118, 334, 451, 466
BmiI	GGNNCC	1 cut(s)	215
BmrI	ACTGGG	2 cut(s)	211, 244
BmsI	GCATC	2 cut(s)	315, 328
BmuI	ACTGGG	2 cut(s)	211, 244
BpmI	CTGGAG	1 cut(s)	429
Bpu14I	TTCGAA	1 cut(s)	140
BsaHI	GRCGYC	1 cut(s)	243
Bsc4I	CCNNNNNNNGG	2 cut(s)	178, 203
Bse1I	ACTGG	2 cut(s)	206, 239
BseLI	CCNNNNNNNGG	2 cut(s)	178, 203
BseMII	CTCAG	2 cut(s)	88, 200
BseNI	ACTGG	2 cut(s)	206, 239
BseXI	GCAGC	5 cut(s)	97, 100, 103, 319, 461
BshNI	GGYRCC	1 cut(s)	213
BsiHKAI	GWGCWC	1 cut(s)	445
BslI	CCNNNNNNNGG	2 cut(s)	178, 203
BsmAI	GTCTC	1 cut(s)	250
BsmBI	CGTCTC	1 cut(s)	250
Bsp119I	TTCGAA	1 cut(s)	140
Bsp1286I	GDGCHC	1 cut(s)	445
Bsp143I	GATC	2 cut(s)	34, 255
BspCNI	CTCAG	2 cut(s)	87, 199
BspLI	GGNNCC	1 cut(s)	215
BspMAI	CTGCAG	1 cut(s)	337
BspPI	GGATC	1 cut(s)	42
BspT104I	TTCGAA	1 cut(s)	140
BspT107I	GGYRCC	1 cut(s)	213
BsrI	ACTGG	2 cut(s)	206, 239
BssMI	GATC	2 cut(s)	34, 255
BssNI	GRCGYC	1 cut(s)	243
Bst4CI	ACNGT	1 cut(s)	284
BstACI	GRCGYC	1 cut(s)	243
BstBI	TTCGAA	1 cut(s)	140
BstC8I	GCNNGC	3 cut(s)	7, 326, 330
BstDEI	CTNAG	3 cut(s)	74, 186, 225
BstENI	CCTNNNNNAGG	1 cut(s)	176
BstHHI	GCGC	1 cut(s)	156
BstKTI	GATC	2 cut(s)	37, 258
BstMAI	GTCTC	1 cut(s)	250
BstMBI	GATC	2 cut(s)	34, 255
BstMWI	GCNNNNNNNGC	4 cut(s)	23, 116, 338, 449
BstSFI	CTRYAG	2 cut(s)	333, 432
BstV1I	GCAGC	5 cut(s)	97, 100, 103, 319, 461
BstXI	CCANNNNNNTGG	1 cut(s)	371
BtsI	GCAGTG	1 cut(s)	87
BtsIMutI	CAGTG	2 cut(s)	87, 232
Cac8I	GCNNGC	3 cut(s)	7, 326, 330
CaiI	CAGNNNCTG	1 cut(s)	452
CfoI	GCGC	1 cut(s)	156
CseI	GACGC	1 cut(s)	232
Csp6I	GTAC	2 cut(s)	214, 382
CviAII	CATG	2 cut(s)	290, 300
CviQI	GTAC	2 cut(s)	214, 382
DdeI	CTNAG	3 cut(s)	74, 186, 225
DpnI	GATC	2 cut(s)	36, 257
DpnII	GATC	2 cut(s)	34, 255
Eco57I	CTGAAG	1 cut(s)	67
EcoNI	CCTNNNNNAGG	1 cut(s)	176
Esp3I	CGTCTC	1 cut(s)	250
FaeI	CATG	2 cut(s)	293, 303
FaiI	YATR	5 cut(s)	44, 52, 291, 301, 315
FalI	AAGNNNNNCTT	2 cut(s)	308, 340
FatI	CATG	2 cut(s)	289, 299
FblI	GTMKAC	1 cut(s)	286
Fnu4HI	GCNGC	6 cut(s)	111, 114, 117, 333, 450, 465
Fsp4HI	GCNGC	6 cut(s)	111, 114, 117, 333, 450, 465
GlaI	GCGC	1 cut(s)	155
GluI	GCNGC	6 cut(s)	111, 114, 117, 333, 450, 465
GsuI	CTGGAG	1 cut(s)	429
HgaI	GACGC	1 cut(s)	232
HhaI	GCGC	1 cut(s)	156
Hin1I	GRCGYC	1 cut(s)	243
Hin1II	CATG	2 cut(s)	293, 303
Hin6I	GCGC	1 cut(s)	154
HinP1I	GCGC	1 cut(s)	154
HinfI	GANTC	2 cut(s)	229, 360
HphI	GGTGA	1 cut(s)	250
Hpy166II	GTNNAC	2 cut(s)	287, 364
Hpy188I	TCNGA	2 cut(s)	77, 97
Hpy8I	GTNNAC	2 cut(s)	287, 364
HpyAV	CCTTC	3 cut(s)	114, 135, 314
HpyCH4III	ACNGT	1 cut(s)	284
HpyCH4V	TGCA	1 cut(s)	335
HpyF10VI	GCNNNNNNNGC	4 cut(s)	23, 116, 338, 449
HpyF3I	CTNAG	3 cut(s)	74, 186, 225
Hsp92I	GRCGYC	1 cut(s)	243
Hsp92II	CATG	2 cut(s)	293, 303
HspAI	GCGC	1 cut(s)	154
KpnI	GGTACC	1 cut(s)	217
Kzo9I	GATC	2 cut(s)	34, 255
LmnI	GCTCC	2 cut(s)	346, 448
LpnPI	CCDG	7 cut(s)	185, 187, 220, 266, 342, 417, 459
Lsp1109I	GCAGC	5 cut(s)	97, 100, 103, 319, 461
LweI	GCATC	2 cut(s)	315, 328
MaeIII	GTNAC	2 cut(s)	28, 421
MalI	GATC	2 cut(s)	36, 257
MboI	GATC	2 cut(s)	34, 255
MboII	GAAGA	6 cut(s)	120, 123, 154, 172, 175, 178
MhlI	GDGCHC	1 cut(s)	445
MlyI	GAGTC	2 cut(s)	223, 369
MmeI	TCCRAC	1 cut(s)	356
MnlI	CCTC	4 cut(s)	48, 83, 172, 372
MroXI	GAANNNNTTC	1 cut(s)	411
MslI	CAYNNNNRTG	1 cut(s)	369
MspA1I	CMGCKG	2 cut(s)	332, 452
MwoI	GCNNNNNNNGC	4 cut(s)	23, 116, 338, 449
NdeII	GATC	2 cut(s)	34, 255
NlaIII	CATG	2 cut(s)	293, 303
NlaIV	GGNNCC	1 cut(s)	215
NmuCI	GTSAC	1 cut(s)	421
NspV	TTCGAA	1 cut(s)	140
OliI	CACNNNNGTG	1 cut(s)	369
PdmI	GAANNNNTTC	1 cut(s)	411
PkrI	GCNGC	6 cut(s)	112, 115, 118, 334, 451, 466
PleI	GAGTC	2 cut(s)	223, 368
PpsI	GAGTC	2 cut(s)	223, 368
PspN4I	GGNNCC	1 cut(s)	215
PstI	CTGCAG	1 cut(s)	337
PstNI	CAGNNNCTG	1 cut(s)	452
PvuII	CAGCTG	2 cut(s)	332, 452
RsaI	GTAC	2 cut(s)	215, 383
RsaNI	GTAC	2 cut(s)	214, 382
RseI	CAYNNNNRTG	1 cut(s)	369
SatI	GCNGC	6 cut(s)	111, 114, 117, 333, 450, 465
Sau3AI	GATC	2 cut(s)	34, 255
SchI	GAGTC	2 cut(s)	223, 369
SduI	GDGCHC	1 cut(s)	445
SetI	ASST	8 cut(s)	71, 174, 183, 334, 383, 433, 454, 469
SfaNI	GCATC	2 cut(s)	315, 328
SfcI	CTRYAG	2 cut(s)	333, 432
SfuI	TTCGAA	1 cut(s)	140
SmiMI	CAYNNNNRTG	1 cut(s)	369
TaaI	ACNGT	1 cut(s)	284
TaqI	TCGA	3 cut(s)	37, 65, 140
TscAI	CASTG	2 cut(s)	94, 239
TseFI	GTSAC	1 cut(s)	421
TseI	GCWGC	6 cut(s)	110, 113, 116, 332, 449, 464
Tsp45I	GTSAC	1 cut(s)	421
TspDTI	ATGAA	1 cut(s)	302
TspGWI	ACGGA	1 cut(s)	47
TspRI	CASTG	2 cut(s)	94, 239
XagI	CCTNNNNNAGG	1 cut(s)	176
XmiI	GTMKAC	1 cut(s)	286
XmnI	GAANNNNTTC	1 cut(s)	411

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.