Rh5AG443800

Mitochondrial 28S ribosomal protein S34

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0009129
Physical Location & Seq
Reverse (-)
76140640 .. 76142342
1703 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG443800.1

Sequence Viewer

Length: 477 bp
ATGGCGTGCAGTCTCGCACAGAGAGCGGTGACGGATCGAACAGTAGGGTTATTGAGGCTCACGTCGAGCTTCGTCAGAAGCTTCAGCACCGCTTCGCCAAACCCTACTGACGCCGCCGCCGCCGGTTCTTCTCCGGTGGCCACTAAGCCGAAGAAGAGAAAGAAGAAGAACCTGTTCGAGGTGGCACAGTATCTACCCAATTGGGGACTTGGGTACCACATGGCTAAGAGCCACTGGGTCGGCGTCTCGTATCAGATCACCAAAATCAATCTTTACAAGGATGGTAAGCATGGAAAGGCATGGGGAGTCGTTCATAAGGAAGGCTTGCCAGCTGCAGATGCTCCCAAGAAAATAAGTGGAGTCCACAAGCGTGGTTGGAGGTACATTCCAAGCTTATCTAAGTCGACTGAAAGTGTTCCAAGTATGACTAAACCAACAGAAACTGCTCCAGCAACACCTGAAGTTCAACCAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MRP-S34

Protein Analysis

158

Amino Acids

17.1

Weight (kDa)

10.16

Isoelectric Point (pI)

42.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MRP-S34 PF16053 56 - 133 2e-09 Mitochondrial 28S ribosomal protein S34
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 213
AccB1I GGYRCC 1 cut(s) 213
AccBSI CCGCTC 1 cut(s) 26
AccI GTMKAC 1 cut(s) 404
AciI CCGC 5 cut(s) 26, 90, 114, 117, 120
AclWI GGATC 1 cut(s) 42
AcoI YGGCCR 1 cut(s) 138
AcuI CTGAAG 1 cut(s) 67
AcyI GRCGYC 2 cut(s) 111, 243
AfaI GTAC 2 cut(s) 215, 383
AfiI CCNNNNNNNGG 2 cut(s) 178, 203
AgsI TTSAA 1 cut(s) 467
AjiI CACGTC 1 cut(s) 63
AleI CACNNNNGTG 1 cut(s) 369
AluBI AGCT 5 cut(s) 69, 81, 332, 393, 473
AluI AGCT 5 cut(s) 69, 81, 332, 393, 473
Alw26I GTCTC 2 cut(s) 17, 250
AlwI GGATC 1 cut(s) 42
AlwNI CAGNNNCTG 1 cut(s) 443
AoxI GGCC 1 cut(s) 138
ApeKI GCWGC 1 cut(s) 332
Asp700I GAANNNNTTC 2 cut(s) 173, 414
Asp718I GGTACC 1 cut(s) 213
AsuHPI GGTGA 2 cut(s) 40, 250
BaeI ACNNNNGTAYC 2 cut(s) 197, 230
BalI TGGCCA 1 cut(s) 140
BanI GGYRCC 1 cut(s) 213
BbvI GCAGC 1 cut(s) 319
BccI CCATC 1 cut(s) 275
BcoDI GTCTC 2 cut(s) 17, 250
BfmI CTRYAG 1 cut(s) 333
BisI GCNGC 4 cut(s) 114, 117, 120, 333
BlsI GCNGC 4 cut(s) 115, 118, 121, 334
BmgBI CACGTC 1 cut(s) 63
BmiI GGNNCC 1 cut(s) 215
BmrI ACTGGG 1 cut(s) 244
BmsI GCATC 1 cut(s) 328
BmuI ACTGGG 1 cut(s) 244
BpmI CTGGAG 1 cut(s) 432
BsaHI GRCGYC 2 cut(s) 111, 243
BsaWI WCCGGW 1 cut(s) 133
Bsc4I CCNNNNNNNGG 2 cut(s) 178, 203
Bse118I RCCGGY 1 cut(s) 122
Bse1I ACTGG 1 cut(s) 239
BseGI GGATG 1 cut(s) 286
BseLI CCNNNNNNNGG 2 cut(s) 178, 203
BseNI ACTGG 1 cut(s) 239
BseXI GCAGC 1 cut(s) 319
BsgI GTGCAG 1 cut(s) 28
BshFI GGCC 1 cut(s) 140
BshNI GGYRCC 1 cut(s) 213
BsiSI CCGG 2 cut(s) 123, 134
BslFI GGGAC 1 cut(s) 219
BslI CCNNNNNNNGG 2 cut(s) 178, 203
BsmAI GTCTC 2 cut(s) 17, 250
BsmBI CGTCTC 1 cut(s) 250
BsmFI GGGAC 1 cut(s) 219
BsnI GGCC 1 cut(s) 140
Bsp143I GATC 2 cut(s) 34, 255
BspACI CCGC 5 cut(s) 26, 90, 114, 117, 120
BspANI GGCC 1 cut(s) 140
BspLI GGNNCC 1 cut(s) 215
BspMAI CTGCAG 1 cut(s) 337
BspPI GGATC 1 cut(s) 42
BspT107I GGYRCC 1 cut(s) 213
BsrBI CCGCTC 1 cut(s) 26
BsrFI RCCGGY 1 cut(s) 122
BsrI ACTGG 1 cut(s) 239
BssAI RCCGGY 1 cut(s) 122
BssMI GATC 2 cut(s) 34, 255
BssNI GRCGYC 2 cut(s) 111, 243
Bst4CI ACNGT 2 cut(s) 43, 189
Bst6I CTCTTC 1 cut(s) 149
BstACI GRCGYC 2 cut(s) 111, 243
BstC8I GCNNGC 3 cut(s) 7, 326, 330
BstDEI CTNAG 3 cut(s) 144, 225, 399
BstENI CCTNNNNNAGG 1 cut(s) 176
BstF5I GGATG 1 cut(s) 286
BstKTI GATC 2 cut(s) 37, 258
BstMAI GTCTC 2 cut(s) 17, 250
BstMBI GATC 2 cut(s) 34, 255
BstMWI GCNNNNNNNGC 3 cut(s) 23, 119, 338
BstSFI CTRYAG 1 cut(s) 333
BstV1I GCAGC 1 cut(s) 319
BstXI CCANNNNNNTGG 1 cut(s) 371
BsuRI GGCC 1 cut(s) 140
BtrI CACGTC 1 cut(s) 63
BtsCI GGATG 1 cut(s) 286
BtsIMutI CAGTG 1 cut(s) 232
Cac8I GCNNGC 3 cut(s) 7, 326, 330
CaiI CAGNNNCTG 1 cut(s) 443
Cfr10I RCCGGY 1 cut(s) 122
CseI GACGC 2 cut(s) 119, 232
Csp6I GTAC 2 cut(s) 214, 382
CviAII CATG 3 cut(s) 220, 290, 300
CviQI GTAC 2 cut(s) 214, 382
DdeI CTNAG 3 cut(s) 144, 225, 399
DpnI GATC 2 cut(s) 36, 257
DpnII GATC 2 cut(s) 34, 255
EaeI YGGCCR 1 cut(s) 138
Eam1104I CTCTTC 1 cut(s) 149
EarI CTCTTC 1 cut(s) 149
Eco57I CTGAAG 1 cut(s) 67
EcoNI CCTNNNNNAGG 1 cut(s) 176
Esp3I CGTCTC 1 cut(s) 250
FaeI CATG 3 cut(s) 223, 293, 303
FaiI YATR 5 cut(s) 221, 291, 301, 315, 425
FalI AAGNNNNNCTT 2 cut(s) 308, 340
FaqI GGGAC 1 cut(s) 219
FatI CATG 3 cut(s) 219, 289, 299
FblI GTMKAC 1 cut(s) 404
Fnu4HI GCNGC 4 cut(s) 114, 117, 120, 333
FokI GGATG 1 cut(s) 293
Fsp4HI GCNGC 4 cut(s) 114, 117, 120, 333
GluI GCNGC 4 cut(s) 114, 117, 120, 333
GsuI CTGGAG 1 cut(s) 432
HaeIII GGCC 1 cut(s) 140
HapII CCGG 2 cut(s) 123, 134
HgaI GACGC 2 cut(s) 119, 232
Hin1I GRCGYC 2 cut(s) 111, 243
Hin1II CATG 3 cut(s) 223, 293, 303
HincII GTYRAC 1 cut(s) 405
HindII GTYRAC 1 cut(s) 405
HindIII AAGCTT 2 cut(s) 79, 391
HinfI GANTC 2 cut(s) 306, 360
HpaII CCGG 2 cut(s) 123, 134
HphI GGTGA 2 cut(s) 40, 250
Hpy166II GTNNAC 2 cut(s) 364, 405
Hpy188I TCNGA 2 cut(s) 77, 255
Hpy8I GTNNAC 2 cut(s) 364, 405
Hpy99I CGWCG 1 cut(s) 67
HpyAV CCTTC 1 cut(s) 314
HpyCH4III ACNGT 2 cut(s) 43, 189
HpyCH4IV ACGT 1 cut(s) 62
HpyCH4V TGCA 2 cut(s) 9, 335
HpyF10VI GCNNNNNNNGC 3 cut(s) 23, 119, 338
HpyF3I CTNAG 3 cut(s) 144, 225, 399
HpySE526I ACGT 1 cut(s) 62
Hsp92I GRCGYC 2 cut(s) 111, 243
Hsp92II CATG 3 cut(s) 223, 293, 303
KpnI GGTACC 1 cut(s) 217
Kzo9I GATC 2 cut(s) 34, 255
LmnI GCTCC 2 cut(s) 346, 451
LpnPI CCDG 7 cut(s) 136, 147, 185, 220, 342, 462, 471
Lsp1109I GCAGC 1 cut(s) 319
LweI GCATC 1 cut(s) 328
MaeII ACGT 1 cut(s) 62
MaeIII GTNAC 1 cut(s) 28
MalI GATC 2 cut(s) 36, 257
MbiI CCGCTC 1 cut(s) 26
MboI GATC 2 cut(s) 34, 255
MboII GAAGA 5 cut(s) 120, 163, 166, 175, 178
MfeI CAATTG 1 cut(s) 199
MlsI TGGCCA 1 cut(s) 140
MluCI AATT 1 cut(s) 199
MluNI TGGCCA 1 cut(s) 140
MlyI GAGTC 2 cut(s) 315, 369
MmeI TCCRAC 1 cut(s) 356
MnlI CCTC 3 cut(s) 48, 172, 372
Mox20I TGGCCA 1 cut(s) 140
MroXI GAANNNNTTC 2 cut(s) 173, 414
MscI TGGCCA 1 cut(s) 140
MslI CAYNNNNRTG 1 cut(s) 369
Msp20I TGGCCA 1 cut(s) 140
MspA1I CMGCKG 1 cut(s) 332
MspI CCGG 2 cut(s) 123, 134
MunI CAATTG 1 cut(s) 199
MwoI GCNNNNNNNGC 3 cut(s) 23, 119, 338
NdeII GATC 2 cut(s) 34, 255
NlaIII CATG 3 cut(s) 223, 293, 303
NlaIV GGNNCC 1 cut(s) 215
NmuCI GTSAC 1 cut(s) 28
OliI CACNNNNGTG 1 cut(s) 369
PdmI GAANNNNTTC 2 cut(s) 173, 414
PkrI GCNGC 4 cut(s) 115, 118, 121, 334
PleI GAGTC 2 cut(s) 314, 368
PpsI GAGTC 2 cut(s) 314, 368
PspN4I GGNNCC 1 cut(s) 215
PstI CTGCAG 1 cut(s) 337
PstNI CAGNNNCTG 1 cut(s) 443
PvuII CAGCTG 1 cut(s) 332
RsaI GTAC 2 cut(s) 215, 383
RsaNI GTAC 2 cut(s) 214, 382
RseI CAYNNNNRTG 1 cut(s) 369
SalI GTCGAC 1 cut(s) 403
SatI GCNGC 4 cut(s) 114, 117, 120, 333
Sau3AI GATC 2 cut(s) 34, 255
SchI GAGTC 2 cut(s) 315, 369
SfaNI GCATC 1 cut(s) 328
SfcI CTRYAG 1 cut(s) 333
SmiMI CAYNNNNRTG 1 cut(s) 369
Sse9I AATT 1 cut(s) 199
SsiI CCGC 5 cut(s) 26, 90, 114, 117, 120
TaaI ACNGT 2 cut(s) 43, 189
TaiI ACGT 1 cut(s) 65
TaqI TCGA 4 cut(s) 37, 65, 177, 404
TasI AATT 1 cut(s) 199
TauI GCSGC 3 cut(s) 116, 119, 122
TscAI CASTG 1 cut(s) 239
TseFI GTSAC 1 cut(s) 28
TseI GCWGC 1 cut(s) 332
Tsp45I GTSAC 1 cut(s) 28
TspDTI ATGAA 1 cut(s) 302
TspGWI ACGGA 1 cut(s) 47
TspRI CASTG 1 cut(s) 239
XagI CCTNNNNNAGG 1 cut(s) 176
XmiI GTMKAC 1 cut(s) 404
XmnI GAANNNNTTC 2 cut(s) 173, 414
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.