MD11G1084700.v1.1

Mitochondrial 28S ribosomal protein S34

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0009129
Physical Location & Seq
Forward (+)
7127730 .. 7130279
2550 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1084700.v1.1.491

Sequence Viewer

Length: 465 bp
ATGGCGAGCGGTCTTGCAAACAGAGCATTAACGGATCGAACCGGAGGTCTCTGGAGGCTCACATCGAGCTTCCTCAGAAGCTTTAGCACCGCTTCCCAAAACCCAACTTCCGCCGCCGCTTCTCCTTCTTCGGCTTCAAATAAACCCAAGCGGAAGAAAAAGAAGAACCTGTTCGAGGTGGCCCAGTTTCTACCCAACTGGGGATTGGGGTACCAAATGGCTAAGACCCATTGGGTCGGCGTCTCTTACCAGATTACCAAAATCAATCTTTATAAGGATGGTAGACATGGCAAGGCATGGGGAATCGTTCATAAGGAAGGCTTGCCAGCTGCAGATGCCCCCAAGAAAATAAGTGGAGTCCACAAGCGTGGTTGGAGATACATTCCCAACTCAAAGACTGAATTTGTTCCAAGTATGACTAAACCTACAGAAAGGGCTCCAGCAGCTGAAGTTCAAGCAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MRP-S34

Protein Analysis

155

Amino Acids

16.88

Weight (kDa)

10.56

Isoelectric Point (pI)

37.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MRP-S34 PF16053 55 - 145 7.4e-11 Mitochondrial 28S ribosomal protein S34
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 273
Acc65I GGTACC 1 cut(s) 210
AccB1I GGYRCC 1 cut(s) 210
AccBSI CCGCTC 1 cut(s) 9
AccI GTMKAC 1 cut(s) 283
AciI CCGC 6 cut(s) 9, 90, 111, 114, 117, 151
AclWI GGATC 1 cut(s) 42
AcsI RAATTY 1 cut(s) 401
AcyI GRCGYC 1 cut(s) 240
AfaI GTAC 1 cut(s) 212
AfiI CCNNNNNNNGG 2 cut(s) 175, 200
AgsI TTSAA 2 cut(s) 138, 455
AleI CACNNNNGTG 1 cut(s) 366
AluBI AGCT 5 cut(s) 69, 81, 329, 446, 461
AluI AGCT 5 cut(s) 69, 81, 329, 446, 461
Alw26I GTCTC 2 cut(s) 53, 247
AlwI GGATC 1 cut(s) 42
AlwNI CAGNNNCTG 1 cut(s) 446
AoxI GGCC 1 cut(s) 180
ApeKI GCWGC 3 cut(s) 329, 443, 458
ApoI RAATTY 1 cut(s) 401
ArsI GACNNNNNNTTYG 2 cut(s) 31, 63
Asp700I GAANNNNTTC 2 cut(s) 170, 405
Asp718I GGTACC 1 cut(s) 210
AspS9I GGNCC 1 cut(s) 181
BanI GGYRCC 1 cut(s) 210
BanII GRGCYC 1 cut(s) 439
BbvI GCAGC 2 cut(s) 316, 455
BccI CCATC 1 cut(s) 272
BcoDI GTCTC 2 cut(s) 53, 247
BfmI CTRYAG 2 cut(s) 330, 426
BisI GCNGC 5 cut(s) 114, 117, 330, 444, 459
BlsI GCNGC 5 cut(s) 115, 118, 331, 445, 460
BmgT120I GGNCC 1 cut(s) 181
BmiI GGNNCC 2 cut(s) 212, 438
BmrI ACTGGG 2 cut(s) 178, 208
BmsI GCATC 1 cut(s) 325
BmuI ACTGGG 2 cut(s) 178, 208
BpmI CTGGAG 2 cut(s) 73, 423
BsaHI GRCGYC 1 cut(s) 240
BsaI GGTCTC 1 cut(s) 53
BsaWI WCCGGW 1 cut(s) 41
Bsc4I CCNNNNNNNGG 2 cut(s) 175, 200
Bse1I ACTGG 2 cut(s) 184, 203
BseGI GGATG 1 cut(s) 283
BseLI CCNNNNNNNGG 2 cut(s) 175, 200
BseMII CTCAG 1 cut(s) 88
BseNI ACTGG 2 cut(s) 184, 203
BseXI GCAGC 2 cut(s) 316, 455
BshFI GGCC 1 cut(s) 182
BshNI GGYRCC 1 cut(s) 210
BsiSI CCGG 1 cut(s) 42
BslI CCNNNNNNNGG 2 cut(s) 175, 200
BsmAI GTCTC 2 cut(s) 53, 247
BsmBI CGTCTC 1 cut(s) 247
BsnI GGCC 1 cut(s) 182
Bso31I GGTCTC 1 cut(s) 53
Bsp1286I GDGCHC 1 cut(s) 439
Bsp143I GATC 1 cut(s) 34
BspACI CCGC 6 cut(s) 9, 90, 111, 114, 117, 151
BspANI GGCC 1 cut(s) 182
BspCNI CTCAG 1 cut(s) 87
BspLI GGNNCC 2 cut(s) 212, 438
BspMAI CTGCAG 1 cut(s) 334
BspPI GGATC 1 cut(s) 42
BspT107I GGYRCC 1 cut(s) 210
BspTNI GGTCTC 1 cut(s) 53
BsrBI CCGCTC 1 cut(s) 9
BsrI ACTGG 2 cut(s) 184, 203
BssMI GATC 1 cut(s) 34
BssNI GRCGYC 1 cut(s) 240
BstACI GRCGYC 1 cut(s) 240
BstC8I GCNNGC 3 cut(s) 7, 323, 327
BstDEI CTNAG 2 cut(s) 74, 222
BstENI CCTNNNNNAGG 1 cut(s) 173
BstF5I GGATG 1 cut(s) 283
BstKTI GATC 1 cut(s) 37
BstMAI GTCTC 2 cut(s) 53, 247
BstMBI GATC 1 cut(s) 34
BstMWI GCNNNNNNNGC 3 cut(s) 23, 335, 443
BstSFI CTRYAG 2 cut(s) 330, 426
BstV1I GCAGC 2 cut(s) 316, 455
BstXI CCANNNNNNTGG 1 cut(s) 368
BsuRI GGCC 1 cut(s) 182
BtsCI GGATG 1 cut(s) 283
Cac8I GCNNGC 3 cut(s) 7, 323, 327
CaiI CAGNNNCTG 1 cut(s) 446
Cfr13I GGNCC 1 cut(s) 181
CseI GACGC 1 cut(s) 229
Csp6I GTAC 1 cut(s) 211
CviAII CATG 2 cut(s) 287, 297
CviQI GTAC 1 cut(s) 211
DdeI CTNAG 2 cut(s) 74, 222
DpnI GATC 1 cut(s) 36
DpnII GATC 1 cut(s) 34
EciI GGCGGA 1 cut(s) 100
Eco24I GRGCYC 1 cut(s) 439
Eco31I GGTCTC 1 cut(s) 53
EcoNI CCTNNNNNAGG 1 cut(s) 173
EcoT38I GRGCYC 1 cut(s) 439
Esp3I CGTCTC 1 cut(s) 247
FaeI CATG 2 cut(s) 290, 300
FaiI YATR 5 cut(s) 273, 288, 298, 312, 416
FalI AAGNNNNNCTT 2 cut(s) 305, 337
FatI CATG 2 cut(s) 286, 296
FblI GTMKAC 1 cut(s) 283
Fnu4HI GCNGC 5 cut(s) 114, 117, 330, 444, 459
FokI GGATG 1 cut(s) 290
FriOI GRGCYC 1 cut(s) 439
Fsp4HI GCNGC 5 cut(s) 114, 117, 330, 444, 459
GluI GCNGC 5 cut(s) 114, 117, 330, 444, 459
GsuI CTGGAG 2 cut(s) 73, 423
HaeIII GGCC 1 cut(s) 182
HapII CCGG 1 cut(s) 42
HgaI GACGC 1 cut(s) 229
Hin1I GRCGYC 1 cut(s) 240
Hin1II CATG 2 cut(s) 290, 300
HindIII AAGCTT 1 cut(s) 79
HinfI GANTC 2 cut(s) 303, 357
HpaII CCGG 1 cut(s) 42
Hpy166II GTNNAC 2 cut(s) 284, 361
Hpy188I TCNGA 1 cut(s) 77
Hpy188III TCNNGA 1 cut(s) 52
Hpy8I GTNNAC 2 cut(s) 284, 361
HpyAV CCTTC 2 cut(s) 135, 311
HpyCH4V TGCA 2 cut(s) 17, 332
HpyF10VI GCNNNNNNNGC 3 cut(s) 23, 335, 443
HpyF3I CTNAG 2 cut(s) 74, 222
Hsp92I GRCGYC 1 cut(s) 240
Hsp92II CATG 2 cut(s) 290, 300
KpnI GGTACC 1 cut(s) 214
Kzo9I GATC 1 cut(s) 34
LmnI GCTCC 1 cut(s) 442
LpnPI CCDG 8 cut(s) 37, 55, 182, 184, 197, 263, 339, 453
Lsp1109I GCAGC 2 cut(s) 316, 455
LweI GCATC 1 cut(s) 325
MalI GATC 1 cut(s) 36
MbiI CCGCTC 1 cut(s) 9
MboI GATC 1 cut(s) 34
MboII GAAGA 3 cut(s) 120, 166, 175
MhlI GDGCHC 1 cut(s) 439
MluCI AATT 1 cut(s) 401
MlyI GAGTC 1 cut(s) 366
MmeI TCCRAC 1 cut(s) 353
MnlI CCTC 4 cut(s) 38, 48, 83, 169
MroXI GAANNNNTTC 2 cut(s) 170, 405
MseI TTAA 1 cut(s) 29
MslI CAYNNNNRTG 1 cut(s) 366
MspA1I CMGCKG 2 cut(s) 329, 446
MspI CCGG 1 cut(s) 42
MwoI GCNNNNNNNGC 3 cut(s) 23, 335, 443
NdeII GATC 1 cut(s) 34
NlaIII CATG 2 cut(s) 290, 300
NlaIV GGNNCC 2 cut(s) 212, 438
OliI CACNNNNGTG 1 cut(s) 366
PdmI GAANNNNTTC 2 cut(s) 170, 405
PfeI GAWTC 1 cut(s) 303
PkrI GCNGC 5 cut(s) 115, 118, 331, 445, 460
PleI GAGTC 1 cut(s) 365
PpsI GAGTC 1 cut(s) 365
PsiI TTATAA 1 cut(s) 273
PspN4I GGNNCC 2 cut(s) 212, 438
PspPI GGNCC 1 cut(s) 181
PstI CTGCAG 1 cut(s) 334
PstNI CAGNNNCTG 1 cut(s) 446
PvuII CAGCTG 2 cut(s) 329, 446
RsaI GTAC 1 cut(s) 212
RsaNI GTAC 1 cut(s) 211
RseI CAYNNNNRTG 1 cut(s) 366
SaqAI TTAA 1 cut(s) 29
SatI GCNGC 5 cut(s) 114, 117, 330, 444, 459
Sau3AI GATC 1 cut(s) 34
Sau96I GGNCC 1 cut(s) 181
SchI GAGTC 1 cut(s) 366
SduI GDGCHC 1 cut(s) 439
SetI ASST 9 cut(s) 49, 71, 83, 171, 180, 331, 427, 448, 463
SfaNI GCATC 1 cut(s) 325
SfcI CTRYAG 2 cut(s) 330, 426
SmiMI CAYNNNNRTG 1 cut(s) 366
Sse9I AATT 1 cut(s) 401
SsiI CCGC 6 cut(s) 9, 90, 111, 114, 117, 151
TaqI TCGA 3 cut(s) 37, 65, 174
TasI AATT 1 cut(s) 401
TauI GCSGC 2 cut(s) 116, 119
TfiI GAWTC 1 cut(s) 303
Tru1I TTAA 1 cut(s) 29
Tru9I TTAA 1 cut(s) 29
TseI GCWGC 3 cut(s) 329, 443, 458
TspDTI ATGAA 1 cut(s) 299
TspGWI ACGGA 1 cut(s) 47
XagI CCTNNNNNAGG 1 cut(s) 173
XapI RAATTY 1 cut(s) 401
XcmI CCANNNNNNNNNTGG 1 cut(s) 202
XmiI GTMKAC 1 cut(s) 283
XmnI GAANNNNTTC 2 cut(s) 170, 405
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.