Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0009129

Physical Location & Seq

Genomic Coordinates Forward (+)

4993847 .. 4995275

Gene Structure 1429 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g06410.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGGCGAGCAGTCTCGCAAGCAGAGCATTAACGGATCGAACCGGAAGCCTCTGGAGGCTTACATCGAGCTTCCTCCGAAGCTTCAGCACCGCTTCCCAAAACCCACCCGCCGGCGCCACTTCGCCTTCGGCGTCAAAGAAACCCAAGCGGAAGAAGAAGAAGAACCTGTTCGAGGTGGCCCAGTTTCTGCCCAACTGGGGATTGGGGTACCAAATGGCTAAGACCCACTGGGTCGGCGTCTCTTACCAGATTACAAAAATCAATCTTTACAAGGATGGTAGACATGGCAAGGCATGGGGAATCGTTCATAAGGAAGGCTTGCCAGCCGCAGATGCCCCCAAGAAAATAAGCGGAGTCCACAAGCGTGGTTGGAGGTACATTCCAAACTCGAAGACTGAAATTGTTCCAAGTATGACTAAACCTACGGAAAGTGCTCCAGCAGCTGAAGTTCAAGCAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MRP-S34

Protein Analysis

154

Amino Acids

16.73

Weight (kDa)

10.48

Isoelectric Point (pI)

40.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009129)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52370 AT5G58990
fragaria_vesca	FvH4_3g37450
malus_domestica	MD03G1080100.v1.1 MD06G1146500.v1.1 MD11G1084700.v1.1
prunus_persica	Prupe.6G065000_v2.0.a1
pyrus_communis	pycom03g06410 pycom11g07320
rosa_chinensis	RchiOBHm_Chr5g0067341
rosa_laevigata	RLG00000035928
rosa_multiflora	Rmu_sc0042776.1_g000001 Rmu_ssc0000354.1_g000003
rosa_roxburghii	Rroxscaffold_1G00013740
rosa_rugosa	Rorug05G0384400
rosa_samantha	Rh2BG264800 Rh5AG443800 Rh5BG221200 Rh5BG460800 Rh5CG483100 Rh7BG147000
rosa_wichuraiana	Rw5G041450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	207
AccB1I	GGYRCC	2 cut(s)	113, 207
AccI	GTMKAC	1 cut(s)	280
AciI	CCGC	5 cut(s)	90, 108, 148, 327, 351
AclWI	GGATC	1 cut(s)	42
AcuI	CTGAAG	1 cut(s)	67
AcyI	GRCGYC	3 cut(s)	114, 131, 237
AfaI	GTAC	2 cut(s)	209, 377
AfiI	CCNNNNNNNGG	3 cut(s)	110, 172, 197
AgsI	TTSAA	1 cut(s)	452
AleI	CACNNNNGTG	1 cut(s)	363
AluBI	AGCT	4 cut(s)	69, 81, 443, 458
AluI	AGCT	4 cut(s)	69, 81, 443, 458
Alw21I	GWGCWC	1 cut(s)	436
Alw26I	GTCTC	2 cut(s)	17, 244
AlwI	GGATC	1 cut(s)	42
AlwNI	CAGNNNCTG	2 cut(s)	187, 443
AoxI	GGCC	1 cut(s)	177
ApeKI	GCWGC	2 cut(s)	440, 455
Asp700I	GAANNNNTTC	2 cut(s)	167, 402
Asp718I	GGTACC	1 cut(s)	207
AspLEI	GCGC	1 cut(s)	116
AspS9I	GGNCC	1 cut(s)	178
BanI	GGYRCC	2 cut(s)	113, 207
BbsI	GAAGAC	1 cut(s)	398
Bbv12I	GWGCWC	1 cut(s)	436
BbvI	GCAGC	1 cut(s)	452
BccI	CCATC	1 cut(s)	269
BcoDI	GTCTC	2 cut(s)	17, 244
BfoI	RGCGCY	1 cut(s)	117
BisI	GCNGC	3 cut(s)	327, 441, 456
BlsI	GCNGC	3 cut(s)	328, 442, 457
BmgT120I	GGNCC	1 cut(s)	178
BmiI	GGNNCC	2 cut(s)	115, 209
BmrI	ACTGGG	3 cut(s)	175, 205, 238
BmsI	GCATC	1 cut(s)	322
BmuI	ACTGGG	3 cut(s)	175, 205, 238
BpiI	GAAGAC	1 cut(s)	398
BpmI	CTGGAG	2 cut(s)	73, 420
BsaHI	GRCGYC	3 cut(s)	114, 131, 237
BsaWI	WCCGGW	1 cut(s)	41
Bsc4I	CCNNNNNNNGG	3 cut(s)	110, 172, 197
Bse118I	RCCGGY	1 cut(s)	110
Bse1I	ACTGG	3 cut(s)	181, 200, 233
BseGI	GGATG	1 cut(s)	280
BseLI	CCNNNNNNNGG	3 cut(s)	110, 172, 197
BseNI	ACTGG	3 cut(s)	181, 200, 233
BseXI	GCAGC	1 cut(s)	452
BshFI	GGCC	1 cut(s)	179
BshNI	GGYRCC	2 cut(s)	113, 207
BsiHKAI	GWGCWC	1 cut(s)	436
BsiSI	CCGG	2 cut(s)	42, 111
BslI	CCNNNNNNNGG	3 cut(s)	110, 172, 197
BsmAI	GTCTC	2 cut(s)	17, 244
BsmBI	CGTCTC	1 cut(s)	244
BsnI	GGCC	1 cut(s)	179
Bsp1286I	GDGCHC	1 cut(s)	436
Bsp143I	GATC	1 cut(s)	34
BspACI	CCGC	5 cut(s)	90, 108, 148, 327, 351
BspANI	GGCC	1 cut(s)	179
BspLI	GGNNCC	2 cut(s)	115, 209
BspPI	GGATC	1 cut(s)	42
BspT107I	GGYRCC	2 cut(s)	113, 207
BsrFI	RCCGGY	1 cut(s)	110
BsrI	ACTGG	3 cut(s)	181, 200, 233
BssAI	RCCGGY	1 cut(s)	110
BssMI	GATC	1 cut(s)	34
BssNI	GRCGYC	3 cut(s)	114, 131, 237
BstACI	GRCGYC	3 cut(s)	114, 131, 237
BstC8I	GCNNGC	5 cut(s)	7, 19, 112, 320, 324
BstDEI	CTNAG	1 cut(s)	219
BstENI	CCTNNNNNAGG	1 cut(s)	170
BstF5I	GGATG	1 cut(s)	280
BstH2I	RGCGCY	1 cut(s)	117
BstHHI	GCGC	1 cut(s)	116
BstKTI	GATC	1 cut(s)	37
BstMAI	GTCTC	2 cut(s)	17, 244
BstMBI	GATC	1 cut(s)	34
BstMWI	GCNNNNNNNGC	3 cut(s)	23, 332, 440
BstV1I	GCAGC	1 cut(s)	452
BstV2I	GAAGAC	1 cut(s)	398
BstXI	CCANNNNNNTGG	1 cut(s)	365
BsuRI	GGCC	1 cut(s)	179
BtsCI	GGATG	1 cut(s)	280
BtsIMutI	CAGTG	1 cut(s)	226
Cac8I	GCNNGC	5 cut(s)	7, 19, 112, 320, 324
CaiI	CAGNNNCTG	2 cut(s)	187, 443
CfoI	GCGC	1 cut(s)	116
Cfr10I	RCCGGY	1 cut(s)	110
Cfr13I	GGNCC	1 cut(s)	178
CseI	GACGC	2 cut(s)	120, 226
Csp6I	GTAC	2 cut(s)	208, 376
CviAII	CATG	2 cut(s)	284, 294
CviQI	GTAC	2 cut(s)	208, 376
DdeI	CTNAG	1 cut(s)	219
DinI	GGCGCC	1 cut(s)	115
DpnI	GATC	1 cut(s)	36
DpnII	GATC	1 cut(s)	34
Eco57I	CTGAAG	1 cut(s)	67
EcoNI	CCTNNNNNAGG	1 cut(s)	170
EgeI	GGCGCC	1 cut(s)	115
EheI	GGCGCC	1 cut(s)	115
Esp3I	CGTCTC	1 cut(s)	244
FaeI	CATG	2 cut(s)	287, 297
FaiI	YATR	4 cut(s)	285, 295, 309, 413
FalI	AAGNNNNNCTT	2 cut(s)	302, 334
FatI	CATG	2 cut(s)	283, 293
FauI	CCCGC	1 cut(s)	115
FblI	GTMKAC	1 cut(s)	280
Fnu4HI	GCNGC	3 cut(s)	327, 441, 456
FokI	GGATG	1 cut(s)	287
Fsp4HI	GCNGC	3 cut(s)	327, 441, 456
GlaI	GCGC	1 cut(s)	115
GluI	GCNGC	3 cut(s)	327, 441, 456
GsuI	CTGGAG	2 cut(s)	73, 420
HaeII	RGCGCY	1 cut(s)	117
HaeIII	GGCC	1 cut(s)	179
HapII	CCGG	2 cut(s)	42, 111
HgaI	GACGC	2 cut(s)	120, 226
HhaI	GCGC	1 cut(s)	116
Hin1I	GRCGYC	3 cut(s)	114, 131, 237
Hin1II	CATG	2 cut(s)	287, 297
Hin6I	GCGC	1 cut(s)	114
HinP1I	GCGC	1 cut(s)	114
HindIII	AAGCTT	1 cut(s)	79
HinfI	GANTC	2 cut(s)	300, 354
HpaII	CCGG	2 cut(s)	42, 111
Hpy166II	GTNNAC	2 cut(s)	281, 358
Hpy188I	TCNGA	1 cut(s)	77
Hpy188III	TCNNGA	1 cut(s)	52
Hpy8I	GTNNAC	2 cut(s)	281, 358
HpyAV	CCTTC	2 cut(s)	135, 308
HpyF10VI	GCNNNNNNNGC	3 cut(s)	23, 332, 440
HpyF3I	CTNAG	1 cut(s)	219
Hsp92I	GRCGYC	3 cut(s)	114, 131, 237
Hsp92II	CATG	2 cut(s)	287, 297
HspAI	GCGC	1 cut(s)	114
KasI	GGCGCC	1 cut(s)	113
KpnI	GGTACC	1 cut(s)	211
KroI	GCCGGC	1 cut(s)	110
KroNI	GCCGGC	1 cut(s)	112
Kzo9I	GATC	1 cut(s)	34
LmnI	GCTCC	1 cut(s)	439
Lsp1109I	GCAGC	1 cut(s)	452
LweI	GCATC	1 cut(s)	322
MalI	GATC	1 cut(s)	36
MboI	GATC	1 cut(s)	34
MboII	GAAGA	5 cut(s)	163, 166, 169, 172, 403
MhlI	GDGCHC	1 cut(s)	436
MluCI	AATT	1 cut(s)	399
Mly113I	GGCGCC	1 cut(s)	114
MlyI	GAGTC	1 cut(s)	363
MmeI	TCCRAC	1 cut(s)	350
MnlI	CCTC	5 cut(s)	48, 59, 83, 166, 366
MreI	CGCCGGCG	1 cut(s)	110
MroNI	GCCGGC	1 cut(s)	110
MroXI	GAANNNNTTC	2 cut(s)	167, 402
MseI	TTAA	1 cut(s)	29
MslI	CAYNNNNRTG	1 cut(s)	363
MspA1I	CMGCKG	1 cut(s)	443
MspI	CCGG	2 cut(s)	42, 111
MwoI	GCNNNNNNNGC	3 cut(s)	23, 332, 440
NaeI	GCCGGC	1 cut(s)	112
NarI	GGCGCC	1 cut(s)	114
NdeII	GATC	1 cut(s)	34
NgoMIV	GCCGGC	1 cut(s)	110
NlaIII	CATG	2 cut(s)	287, 297
NlaIV	GGNNCC	2 cut(s)	115, 209
OliI	CACNNNNGTG	1 cut(s)	363
PcsI	WCGNNNNNNNCGW	1 cut(s)	128
PdiI	GCCGGC	1 cut(s)	112
PdmI	GAANNNNTTC	2 cut(s)	167, 402
PfeI	GAWTC	1 cut(s)	300
PkrI	GCNGC	3 cut(s)	328, 442, 457
PleI	GAGTC	1 cut(s)	362
PluTI	GGCGCC	1 cut(s)	117
PpsI	GAGTC	1 cut(s)	362
PspN4I	GGNNCC	2 cut(s)	115, 209
PspPI	GGNCC	1 cut(s)	178
PstNI	CAGNNNCTG	2 cut(s)	187, 443
PvuII	CAGCTG	1 cut(s)	443
RsaI	GTAC	2 cut(s)	209, 377
RsaNI	GTAC	2 cut(s)	208, 376
RseI	CAYNNNNRTG	1 cut(s)	363
SaqAI	TTAA	1 cut(s)	29
SatI	GCNGC	3 cut(s)	327, 441, 456
Sau3AI	GATC	1 cut(s)	34
Sau96I	GGNCC	1 cut(s)	178
SchI	GAGTC	1 cut(s)	363
SduI	GDGCHC	1 cut(s)	436
SetI	ASST	8 cut(s)	71, 83, 168, 177, 377, 424, 445, 460
SfaNI	GCATC	1 cut(s)	322
SfoI	GGCGCC	1 cut(s)	115
SgrAI	CRCCGGYG	1 cut(s)	110
SmiMI	CAYNNNNRTG	1 cut(s)	363
Sse9I	AATT	1 cut(s)	399
SsiI	CCGC	5 cut(s)	90, 108, 148, 327, 351
SspDI	GGCGCC	1 cut(s)	113
TaqI	TCGA	4 cut(s)	37, 65, 171, 389
TasI	AATT	1 cut(s)	399
TauI	GCSGC	1 cut(s)	329
TfiI	GAWTC	1 cut(s)	300
Tru1I	TTAA	1 cut(s)	29
Tru9I	TTAA	1 cut(s)	29
TscAI	CASTG	1 cut(s)	233
TseI	GCWGC	2 cut(s)	440, 455
TspDTI	ATGAA	1 cut(s)	296
TspGWI	ACGGA	2 cut(s)	47, 440
TspRI	CASTG	1 cut(s)	233
XagI	CCTNNNNNAGG	1 cut(s)	170
XcmI	CCANNNNNNNNNTGG	1 cut(s)	199
XmiI	GTMKAC	1 cut(s)	280
XmnI	GAANNNNTTC	2 cut(s)	167, 402

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.