Rh2BG264800

Mitochondrial 28S ribosomal protein S34

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0009129
Physical Location & Seq
Forward (+)
28438964 .. 28445751
6788 bp
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UTR
Exon/CDS
Intron
Rh2BG264800.1

Sequence Viewer

Length: 348 bp
ATGCAGTTCATGGTTGCTCTTCTTCATGCAGCAATTATAATGCAATTTCAAGATCAGAAAAGGCTTCGCTATGAAGTTAATATAGTAGAATTTGTTGTAGGCTTGCCAGCTGTAGATGCTCCCAAGAAAATAAGTAGAGTCCACAAGCGTGGTTGGAGGTACATTCTAAGCTTATCTAAGTTGACTGAAAGTCTTCCAAGTACTCTTGGAATTCTGGAGTGCAGGAACAACACCAATCGTCGTCTTGGGTTGAAGGATTTCACGAACCCACTGTTCCTCTCTCTCGGATTTGATCGCAAGCAAATTGGGTTTTGGAAAATTGAAGCAAAATCTTCGAATCAAGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MRP-S34

Protein Analysis

115

Amino Acids

13.25

Weight (kDa)

10.23

Isoelectric Point (pI)

43.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 38
AcsI RAATTY 2 cut(s) 89, 210
AfaI GTAC 2 cut(s) 161, 202
AgsI TTSAA 3 cut(s) 50, 253, 323
AhdI GACNNNNNGTC 1 cut(s) 189
AleI CACNNNNGTG 1 cut(s) 147
AluBI AGCT 2 cut(s) 110, 171
AluI AGCT 2 cut(s) 110, 171
ApeKI GCWGC 1 cut(s) 29
ApoI RAATTY 2 cut(s) 89, 210
Asp700I GAANNNNTTC 2 cut(s) 192, 257
AsuII TTCGAA 1 cut(s) 335
BbsI GAAGAC 1 cut(s) 185
BbvI GCAGC 1 cut(s) 41
BcgI CGANNNNNNTGC 1 cut(s) 315
BfmI CTRYAG 1 cut(s) 111
BisI GCNGC 1 cut(s) 30
BlsI GCNGC 1 cut(s) 31
BmcAI AGTACT 1 cut(s) 202
BmeRI GACNNNNNGTC 1 cut(s) 189
BmsI GCATC 1 cut(s) 106
BpiI GAAGAC 1 cut(s) 185
BpmI CTGGAG 1 cut(s) 236
Bpu14I TTCGAA 1 cut(s) 335
BseXI GCAGC 1 cut(s) 41
BsgI GTGCAG 1 cut(s) 241
Bsp119I TTCGAA 1 cut(s) 335
Bsp143I GATC 2 cut(s) 52, 292
BspQI GCTCTTC 1 cut(s) 24
BspT104I TTCGAA 1 cut(s) 335
BssMI GATC 2 cut(s) 52, 292
Bst4CI ACNGT 1 cut(s) 273
Bst6I CTCTTC 1 cut(s) 24
BstBI TTCGAA 1 cut(s) 335
BstC8I GCNNGC 3 cut(s) 104, 108, 299
BstDEI CTNAG 2 cut(s) 167, 177
BstKTI GATC 2 cut(s) 55, 295
BstMBI GATC 2 cut(s) 52, 292
BstMWI GCNNNNNNNGC 1 cut(s) 116
BstSFI CTRYAG 1 cut(s) 111
BstV1I GCAGC 1 cut(s) 41
BstV2I GAAGAC 1 cut(s) 185
BstXI CCANNNNNNTGG 1 cut(s) 149
BtsIMutI CAGTG 1 cut(s) 269
Cac8I GCNNGC 3 cut(s) 104, 108, 299
Csp6I GTAC 2 cut(s) 160, 201
CviAII CATG 2 cut(s) 10, 26
CviJI RGCY 4 cut(s) 64, 102, 110, 171
CviKI_1 RGCY 4 cut(s) 64, 102, 110, 171
CviQI GTAC 2 cut(s) 160, 201
DdeI CTNAG 2 cut(s) 167, 177
DpnI GATC 2 cut(s) 54, 294
DpnII GATC 2 cut(s) 52, 292
DriI GACNNNNNGTC 1 cut(s) 189
Eam1104I CTCTTC 1 cut(s) 24
Eam1105I GACNNNNNGTC 1 cut(s) 189
EarI CTCTTC 1 cut(s) 24
EcoRI GAATTC 1 cut(s) 210
FaeI CATG 2 cut(s) 13, 29
FaiI YATR 5 cut(s) 11, 27, 38, 72, 83
FatI CATG 2 cut(s) 9, 25
Fnu4HI GCNGC 1 cut(s) 30
Fsp4HI GCNGC 1 cut(s) 30
GluI GCNGC 1 cut(s) 30
GsuI CTGGAG 1 cut(s) 236
Hin1II CATG 2 cut(s) 13, 29
HincII GTYRAC 1 cut(s) 183
HindII GTYRAC 1 cut(s) 183
HindIII AAGCTT 1 cut(s) 169
HinfI GANTC 2 cut(s) 138, 337
Hpy166II GTNNAC 2 cut(s) 142, 183
Hpy188I TCNGA 2 cut(s) 57, 287
Hpy188III TCNNGA 3 cut(s) 50, 215, 262
Hpy8I GTNNAC 2 cut(s) 142, 183
Hpy99I CGWCG 1 cut(s) 243
HpyAV CCTTC 1 cut(s) 247
HpyCH4III ACNGT 1 cut(s) 273
HpyCH4V TGCA 4 cut(s) 4, 29, 43, 222
HpyF10VI GCNNNNNNNGC 1 cut(s) 116
HpyF3I CTNAG 2 cut(s) 167, 177
Hsp92II CATG 2 cut(s) 13, 29
Kzo9I GATC 2 cut(s) 52, 292
LguI GCTCTTC 1 cut(s) 24
LmnI GCTCC 1 cut(s) 124
LpnPI CCDG 3 cut(s) 120, 200, 208
Lsp1109I GCAGC 1 cut(s) 41
LweI GCATC 1 cut(s) 106
MalI GATC 2 cut(s) 54, 294
MboI GATC 2 cut(s) 52, 292
MboII GAAGA 4 cut(s) 11, 14, 185, 324
MluCI AATT 6 cut(s) 33, 44, 89, 210, 303, 318
MlyI GAGTC 1 cut(s) 147
MmeI TCCRAC 1 cut(s) 134
MnlI CCTC 2 cut(s) 150, 287
MroXI GAANNNNTTC 2 cut(s) 192, 257
MseI TTAA 1 cut(s) 78
MslI CAYNNNNRTG 1 cut(s) 147
MspA1I CMGCKG 1 cut(s) 110
MwoI GCNNNNNNNGC 1 cut(s) 116
NdeII GATC 2 cut(s) 52, 292
NlaIII CATG 2 cut(s) 13, 29
NspV TTCGAA 1 cut(s) 335
OliI CACNNNNGTG 1 cut(s) 147
PciSI GCTCTTC 1 cut(s) 24
PdmI GAANNNNTTC 2 cut(s) 192, 257
PfeI GAWTC 1 cut(s) 337
PkrI GCNGC 1 cut(s) 31
PleI GAGTC 1 cut(s) 146
PpsI GAGTC 1 cut(s) 146
PsiI TTATAA 1 cut(s) 38
PvuII CAGCTG 1 cut(s) 110
RsaI GTAC 2 cut(s) 161, 202
RsaNI GTAC 2 cut(s) 160, 201
RseI CAYNNNNRTG 1 cut(s) 147
SapI GCTCTTC 1 cut(s) 24
SaqAI TTAA 1 cut(s) 78
SatI GCNGC 1 cut(s) 30
Sau3AI GATC 2 cut(s) 52, 292
ScaI AGTACT 1 cut(s) 202
SchI GAGTC 1 cut(s) 147
SetI ASST 3 cut(s) 112, 161, 173
SfaNI GCATC 1 cut(s) 106
SfcI CTRYAG 1 cut(s) 111
SfuI TTCGAA 1 cut(s) 335
SmiMI CAYNNNNRTG 1 cut(s) 147
Sse9I AATT 6 cut(s) 33, 44, 89, 210, 303, 318
TaaI ACNGT 1 cut(s) 273
TaqI TCGA 1 cut(s) 335
TasI AATT 6 cut(s) 33, 44, 89, 210, 303, 318
TatI WGTACW 1 cut(s) 200
TfiI GAWTC 1 cut(s) 337
Tru1I TTAA 1 cut(s) 78
Tru9I TTAA 1 cut(s) 78
TscAI CASTG 1 cut(s) 276
TseI GCWGC 1 cut(s) 29
TspDTI ATGAA 2 cut(s) 14, 87
TspRI CASTG 1 cut(s) 276
XapI RAATTY 2 cut(s) 89, 210
XmnI GAANNNNTTC 2 cut(s) 192, 257
ZrmI AGTACT 1 cut(s) 202
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.