Rmu_sc0042776.1_g000001

Mitochondrial 28S ribosomal protein S34

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0042776.1
OG0009129
Physical Location & Seq
Forward (+)
1 .. 274
274 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0042776.1_g000001.1.cds

Sequence Viewer

Length: 274 bp
tcgaacagtagggttattgaggctcacgtcgagcttcgtcagaagcttcagcaccgcttcgccaaaccctactgacgccgccgccgccgccggttcttctcctccggtggccactaagccgaagaagagaaagaagaagaacctgttcgaggtggcacagtatctgcccaattggggacttgggtaccacatggctaaaagccactgggtcggcgtctcgtatcagatcaccaaaatcaatctttacaaggtttgttttattgctgggttttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MRP-S34

Protein Analysis

90

Amino Acids

9.87

Weight (kDa)

10.35

Isoelectric Point (pI)

33.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 184
AccB1I GGYRCC 1 cut(s) 184
AciI CCGC 5 cut(s) 55, 79, 82, 85, 88
AcoI YGGCCR 1 cut(s) 109
AcuI CTGAAG 1 cut(s) 32
AcyI GRCGYC 2 cut(s) 76, 214
AfaI GTAC 1 cut(s) 186
AfiI CCNNNNNNNGG 2 cut(s) 149, 174
AjiI CACGTC 1 cut(s) 28
AluBI AGCT 2 cut(s) 34, 46
AluI AGCT 2 cut(s) 34, 46
Alw26I GTCTC 1 cut(s) 221
AlwNI CAGNNNCTG 1 cut(s) 164
AoxI GGCC 1 cut(s) 109
Asp700I GAANNNNTTC 1 cut(s) 144
Asp718I GGTACC 1 cut(s) 184
AsuHPI GGTGA 1 cut(s) 221
BaeI ACNNNNGTAYC 2 cut(s) 168, 201
BalI TGGCCA 1 cut(s) 111
BanI GGYRCC 1 cut(s) 184
BcoDI GTCTC 1 cut(s) 221
BisI GCNGC 4 cut(s) 79, 82, 85, 88
BlsI GCNGC 4 cut(s) 80, 83, 86, 89
BmgBI CACGTC 1 cut(s) 28
BmiI GGNNCC 1 cut(s) 186
BmrI ACTGGG 1 cut(s) 215
BmuI ACTGGG 1 cut(s) 215
BsaHI GRCGYC 2 cut(s) 76, 214
BsaWI WCCGGW 1 cut(s) 104
Bsc4I CCNNNNNNNGG 2 cut(s) 149, 174
Bse118I RCCGGY 1 cut(s) 90
Bse1I ACTGG 1 cut(s) 210
BseLI CCNNNNNNNGG 2 cut(s) 149, 174
BseNI ACTGG 1 cut(s) 210
BseRI GAGGAG 1 cut(s) 91
BseYI CCCAGC 1 cut(s) 264
BshFI GGCC 1 cut(s) 111
BshNI GGYRCC 1 cut(s) 184
BsiSI CCGG 2 cut(s) 91, 105
BslFI GGGAC 1 cut(s) 190
BslI CCNNNNNNNGG 2 cut(s) 149, 174
BsmAI GTCTC 1 cut(s) 221
BsmBI CGTCTC 1 cut(s) 221
BsmFI GGGAC 1 cut(s) 190
BsnI GGCC 1 cut(s) 111
Bsp143I GATC 1 cut(s) 226
BspACI CCGC 5 cut(s) 55, 79, 82, 85, 88
BspANI GGCC 1 cut(s) 111
BspLI GGNNCC 1 cut(s) 186
BspT107I GGYRCC 1 cut(s) 184
BsrFI RCCGGY 1 cut(s) 90
BsrI ACTGG 1 cut(s) 210
BssAI RCCGGY 1 cut(s) 90
BssMI GATC 1 cut(s) 226
BssNI GRCGYC 2 cut(s) 76, 214
Bst4CI ACNGT 2 cut(s) 8, 160
Bst6I CTCTTC 1 cut(s) 120
BstACI GRCGYC 2 cut(s) 76, 214
BstDEI CTNAG 1 cut(s) 115
BstENI CCTNNNNNAGG 1 cut(s) 147
BstKTI GATC 1 cut(s) 229
BstMAI GTCTC 1 cut(s) 221
BstMBI GATC 1 cut(s) 226
BstMWI GCNNNNNNNGC 2 cut(s) 84, 87
BsuRI GGCC 1 cut(s) 111
BtrI CACGTC 1 cut(s) 28
BtsIMutI CAGTG 1 cut(s) 203
CaiI CAGNNNCTG 1 cut(s) 164
Cfr10I RCCGGY 1 cut(s) 90
CseI GACGC 2 cut(s) 84, 203
Csp6I GTAC 1 cut(s) 185
CviAII CATG 1 cut(s) 191
CviJI RGCY 7 cut(s) 23, 34, 46, 111, 119, 195, 202
CviKI_1 RGCY 7 cut(s) 23, 34, 46, 111, 119, 195, 202
CviQI GTAC 1 cut(s) 185
DdeI CTNAG 1 cut(s) 115
DpnI GATC 1 cut(s) 228
DpnII GATC 1 cut(s) 226
EaeI YGGCCR 1 cut(s) 109
Eam1104I CTCTTC 1 cut(s) 120
EarI CTCTTC 1 cut(s) 120
Eco57I CTGAAG 1 cut(s) 32
EcoNI CCTNNNNNAGG 1 cut(s) 147
Esp3I CGTCTC 1 cut(s) 221
FaeI CATG 1 cut(s) 194
FaiI YATR 1 cut(s) 192
FaqI GGGAC 1 cut(s) 190
FatI CATG 1 cut(s) 190
Fnu4HI GCNGC 4 cut(s) 79, 82, 85, 88
Fsp4HI GCNGC 4 cut(s) 79, 82, 85, 88
GluI GCNGC 4 cut(s) 79, 82, 85, 88
GsaI CCCAGC 1 cut(s) 268
HaeIII GGCC 1 cut(s) 111
HapII CCGG 2 cut(s) 91, 105
HgaI GACGC 2 cut(s) 84, 203
Hin1I GRCGYC 2 cut(s) 76, 214
Hin1II CATG 1 cut(s) 194
HindIII AAGCTT 1 cut(s) 44
HpaII CCGG 2 cut(s) 91, 105
HphI GGTGA 1 cut(s) 221
Hpy188I TCNGA 2 cut(s) 42, 226
Hpy99I CGWCG 1 cut(s) 32
HpyCH4III ACNGT 2 cut(s) 8, 160
HpyCH4IV ACGT 1 cut(s) 27
HpyF10VI GCNNNNNNNGC 2 cut(s) 84, 87
HpyF3I CTNAG 1 cut(s) 115
HpySE526I ACGT 1 cut(s) 27
Hsp92I GRCGYC 2 cut(s) 76, 214
Hsp92II CATG 1 cut(s) 194
KpnI GGTACC 1 cut(s) 188
Kzo9I GATC 1 cut(s) 226
LpnPI CCDG 5 cut(s) 104, 118, 156, 191, 250
MaeII ACGT 1 cut(s) 27
MalI GATC 1 cut(s) 228
MboI GATC 1 cut(s) 226
MboII GAAGA 5 cut(s) 88, 134, 137, 146, 149
MfeI CAATTG 1 cut(s) 170
MlsI TGGCCA 1 cut(s) 111
MluCI AATT 1 cut(s) 170
MluNI TGGCCA 1 cut(s) 111
MnlI CCTC 3 cut(s) 13, 112, 143
Mox20I TGGCCA 1 cut(s) 111
MroXI GAANNNNTTC 1 cut(s) 144
MscI TGGCCA 1 cut(s) 111
Msp20I TGGCCA 1 cut(s) 111
MspI CCGG 2 cut(s) 91, 105
MunI CAATTG 1 cut(s) 170
MwoI GCNNNNNNNGC 2 cut(s) 84, 87
NdeII GATC 1 cut(s) 226
NlaIII CATG 1 cut(s) 194
NlaIV GGNNCC 1 cut(s) 186
PdmI GAANNNNTTC 1 cut(s) 144
PkrI GCNGC 4 cut(s) 80, 83, 86, 89
PspFI CCCAGC 1 cut(s) 264
PspN4I GGNNCC 1 cut(s) 186
PstNI CAGNNNCTG 1 cut(s) 164
RsaI GTAC 1 cut(s) 186
RsaNI GTAC 1 cut(s) 185
SatI GCNGC 4 cut(s) 79, 82, 85, 88
Sau3AI GATC 1 cut(s) 226
SetI ASST 6 cut(s) 30, 36, 48, 145, 154, 253
Sse9I AATT 1 cut(s) 170
SsiI CCGC 5 cut(s) 55, 79, 82, 85, 88
TaaI ACNGT 2 cut(s) 8, 160
TaiI ACGT 1 cut(s) 30
TaqI TCGA 3 cut(s) 2, 30, 148
TasI AATT 1 cut(s) 170
TauI GCSGC 4 cut(s) 81, 84, 87, 90
TscAI CASTG 1 cut(s) 210
TspRI CASTG 1 cut(s) 210
XagI CCTNNNNNAGG 1 cut(s) 147
XmnI GAANNNNTTC 1 cut(s) 144
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.