Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000354.1

Orthogroup ID

OG0009129

Physical Location & Seq

Genomic Coordinates Reverse (-)

10297 .. 10596

Gene Structure 300 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000354.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

atggcgagcagtctcgcacagagagcagtgacggatcgaacagtagggttattgaggctcacgtcgagcttcgtcagaagcttcagcaccgcttcgccaaaccctactgacgccgctgccggttcttctccggtggccactaagccgaagaagagaaagaagaagaacctgttcgaggtggcacagtatctgcccaattggggacttgggtaccacatggctaagagccactgggtcggcgtctcgtatcagatcaccaaaatcaatctttacaaggtttgttttattgctgggttttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MRP-S34

Protein Analysis

99

Amino Acids

10.87

Weight (kDa)

10.34

Isoelectric Point (pI)

30.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009129)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52370 AT5G58990
fragaria_vesca	FvH4_3g37450
malus_domestica	MD03G1080100.v1.1 MD06G1146500.v1.1 MD11G1084700.v1.1
prunus_persica	Prupe.6G065000_v2.0.a1
pyrus_communis	pycom03g06410 pycom11g07320
rosa_chinensis	RchiOBHm_Chr5g0067341
rosa_laevigata	RLG00000035928
rosa_multiflora	Rmu_sc0042776.1_g000001 Rmu_ssc0000354.1_g000003
rosa_roxburghii	Rroxscaffold_1G00013740
rosa_rugosa	Rorug05G0384400
rosa_samantha	Rh2BG264800 Rh5AG443800 Rh5BG221200 Rh5BG460800 Rh5CG483100 Rh7BG147000
rosa_wichuraiana	Rw5G041450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	210
AccB1I	GGYRCC	1 cut(s)	210
AciI	CCGC	2 cut(s)	90, 114
AclWI	GGATC	1 cut(s)	42
AcoI	YGGCCR	1 cut(s)	135
AcuI	CTGAAG	1 cut(s)	67
AcyI	GRCGYC	2 cut(s)	111, 240
AfaI	GTAC	1 cut(s)	212
AfiI	CCNNNNNNNGG	2 cut(s)	175, 200
AjiI	CACGTC	1 cut(s)	63
AluBI	AGCT	2 cut(s)	69, 81
AluI	AGCT	2 cut(s)	69, 81
Alw26I	GTCTC	2 cut(s)	17, 247
AlwI	GGATC	1 cut(s)	42
AlwNI	CAGNNNCTG	1 cut(s)	190
AoxI	GGCC	1 cut(s)	135
ApeKI	GCWGC	1 cut(s)	116
Asp700I	GAANNNNTTC	1 cut(s)	170
Asp718I	GGTACC	1 cut(s)	210
AsuHPI	GGTGA	1 cut(s)	247
BaeI	ACNNNNGTAYC	2 cut(s)	194, 227
BalI	TGGCCA	1 cut(s)	137
BanI	GGYRCC	1 cut(s)	210
BbvI	GCAGC	1 cut(s)	103
BcoDI	GTCTC	2 cut(s)	17, 247
BisI	GCNGC	2 cut(s)	114, 117
BlsI	GCNGC	2 cut(s)	115, 118
BmgBI	CACGTC	1 cut(s)	63
BmiI	GGNNCC	1 cut(s)	212
BmrI	ACTGGG	1 cut(s)	241
BmuI	ACTGGG	1 cut(s)	241
BsaHI	GRCGYC	2 cut(s)	111, 240
BsaWI	WCCGGW	1 cut(s)	130
Bsc4I	CCNNNNNNNGG	2 cut(s)	175, 200
Bse118I	RCCGGY	1 cut(s)	119
Bse1I	ACTGG	1 cut(s)	236
BseLI	CCNNNNNNNGG	2 cut(s)	175, 200
BseNI	ACTGG	1 cut(s)	236
BseXI	GCAGC	1 cut(s)	103
BseYI	CCCAGC	1 cut(s)	290
BshFI	GGCC	1 cut(s)	137
BshNI	GGYRCC	1 cut(s)	210
BsiSI	CCGG	2 cut(s)	120, 131
BslFI	GGGAC	1 cut(s)	216
BslI	CCNNNNNNNGG	2 cut(s)	175, 200
BsmAI	GTCTC	2 cut(s)	17, 247
BsmBI	CGTCTC	1 cut(s)	247
BsmFI	GGGAC	1 cut(s)	216
BsnI	GGCC	1 cut(s)	137
Bsp143I	GATC	2 cut(s)	34, 252
BspACI	CCGC	2 cut(s)	90, 114
BspANI	GGCC	1 cut(s)	137
BspLI	GGNNCC	1 cut(s)	212
BspPI	GGATC	1 cut(s)	42
BspT107I	GGYRCC	1 cut(s)	210
BsrFI	RCCGGY	1 cut(s)	119
BsrI	ACTGG	1 cut(s)	236
BssAI	RCCGGY	1 cut(s)	119
BssMI	GATC	2 cut(s)	34, 252
BssNI	GRCGYC	2 cut(s)	111, 240
Bst4CI	ACNGT	2 cut(s)	43, 186
Bst6I	CTCTTC	1 cut(s)	146
BstACI	GRCGYC	2 cut(s)	111, 240
BstC8I	GCNNGC	1 cut(s)	7
BstDEI	CTNAG	2 cut(s)	141, 222
BstENI	CCTNNNNNAGG	1 cut(s)	173
BstKTI	GATC	2 cut(s)	37, 255
BstMAI	GTCTC	2 cut(s)	17, 247
BstMBI	GATC	2 cut(s)	34, 252
BstMWI	GCNNNNNNNGC	1 cut(s)	23
BstV1I	GCAGC	1 cut(s)	103
BsuRI	GGCC	1 cut(s)	137
BtrI	CACGTC	1 cut(s)	63
BtsI	GCAGTG	1 cut(s)	33
BtsIMutI	CAGTG	2 cut(s)	33, 229
Cac8I	GCNNGC	1 cut(s)	7
CaiI	CAGNNNCTG	1 cut(s)	190
Cfr10I	RCCGGY	1 cut(s)	119
CseI	GACGC	2 cut(s)	119, 229
Csp6I	GTAC	1 cut(s)	211
CviAII	CATG	1 cut(s)	217
CviJI	RGCY	7 cut(s)	58, 69, 81, 137, 145, 221, 228
CviKI_1	RGCY	7 cut(s)	58, 69, 81, 137, 145, 221, 228
CviQI	GTAC	1 cut(s)	211
DdeI	CTNAG	2 cut(s)	141, 222
DpnI	GATC	2 cut(s)	36, 254
DpnII	GATC	2 cut(s)	34, 252
EaeI	YGGCCR	1 cut(s)	135
Eam1104I	CTCTTC	1 cut(s)	146
EarI	CTCTTC	1 cut(s)	146
Eco57I	CTGAAG	1 cut(s)	67
EcoNI	CCTNNNNNAGG	1 cut(s)	173
Esp3I	CGTCTC	1 cut(s)	247
FaeI	CATG	1 cut(s)	220
FaiI	YATR	1 cut(s)	218
FaqI	GGGAC	1 cut(s)	216
FatI	CATG	1 cut(s)	216
Fnu4HI	GCNGC	2 cut(s)	114, 117
Fsp4HI	GCNGC	2 cut(s)	114, 117
GluI	GCNGC	2 cut(s)	114, 117
GsaI	CCCAGC	1 cut(s)	294
HaeIII	GGCC	1 cut(s)	137
HapII	CCGG	2 cut(s)	120, 131
HgaI	GACGC	2 cut(s)	119, 229
Hin1I	GRCGYC	2 cut(s)	111, 240
Hin1II	CATG	1 cut(s)	220
HindIII	AAGCTT	1 cut(s)	79
HpaII	CCGG	2 cut(s)	120, 131
HphI	GGTGA	1 cut(s)	247
Hpy188I	TCNGA	2 cut(s)	77, 252
Hpy99I	CGWCG	1 cut(s)	67
HpyCH4III	ACNGT	2 cut(s)	43, 186
HpyCH4IV	ACGT	1 cut(s)	62
HpyF10VI	GCNNNNNNNGC	1 cut(s)	23
HpyF3I	CTNAG	2 cut(s)	141, 222
HpySE526I	ACGT	1 cut(s)	62
Hsp92I	GRCGYC	2 cut(s)	111, 240
Hsp92II	CATG	1 cut(s)	220
KpnI	GGTACC	1 cut(s)	214
Kzo9I	GATC	2 cut(s)	34, 252
LpnPI	CCDG	5 cut(s)	133, 144, 182, 217, 276
Lsp1109I	GCAGC	1 cut(s)	103
MaeII	ACGT	1 cut(s)	62
MaeIII	GTNAC	1 cut(s)	28
MalI	GATC	2 cut(s)	36, 254
MboI	GATC	2 cut(s)	34, 252
MboII	GAAGA	5 cut(s)	117, 160, 163, 172, 175
MfeI	CAATTG	1 cut(s)	196
MlsI	TGGCCA	1 cut(s)	137
MluCI	AATT	1 cut(s)	196
MluNI	TGGCCA	1 cut(s)	137
MnlI	CCTC	2 cut(s)	48, 169
Mox20I	TGGCCA	1 cut(s)	137
MroXI	GAANNNNTTC	1 cut(s)	170
MscI	TGGCCA	1 cut(s)	137
Msp20I	TGGCCA	1 cut(s)	137
MspA1I	CMGCKG	1 cut(s)	116
MspI	CCGG	2 cut(s)	120, 131
MunI	CAATTG	1 cut(s)	196
MwoI	GCNNNNNNNGC	1 cut(s)	23
NdeII	GATC	2 cut(s)	34, 252
NlaIII	CATG	1 cut(s)	220
NlaIV	GGNNCC	1 cut(s)	212
NmuCI	GTSAC	1 cut(s)	28
PdmI	GAANNNNTTC	1 cut(s)	170
PkrI	GCNGC	2 cut(s)	115, 118
PspFI	CCCAGC	1 cut(s)	290
PspN4I	GGNNCC	1 cut(s)	212
PstNI	CAGNNNCTG	1 cut(s)	190
RsaI	GTAC	1 cut(s)	212
RsaNI	GTAC	1 cut(s)	211
SatI	GCNGC	2 cut(s)	114, 117
Sau3AI	GATC	2 cut(s)	34, 252
SetI	ASST	6 cut(s)	65, 71, 83, 171, 180, 279
Sse9I	AATT	1 cut(s)	196
SsiI	CCGC	2 cut(s)	90, 114
TaaI	ACNGT	2 cut(s)	43, 186
TaiI	ACGT	1 cut(s)	65
TaqI	TCGA	3 cut(s)	37, 65, 174
TasI	AATT	1 cut(s)	196
TauI	GCSGC	1 cut(s)	116
TscAI	CASTG	2 cut(s)	33, 236
TseFI	GTSAC	1 cut(s)	28
TseI	GCWGC	1 cut(s)	116
Tsp45I	GTSAC	1 cut(s)	28
TspGWI	ACGGA	1 cut(s)	47
TspRI	CASTG	2 cut(s)	33, 236
XagI	CCTNNNNNAGG	1 cut(s)	173
XmnI	GAANNNNTTC	1 cut(s)	170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.