Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0009129

Physical Location & Seq

Genomic Coordinates Forward (+)

5536342 .. 5536996

Gene Structure 655 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g07320.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGGCGAGTGGTTTCGCAAACAGAGCATTAACGGATCGAACCGGAGGCCTCTGGAGGCTGACATCGAGCTTCCTCAGAAGCTTCAGCACCGCTTCCCAAAACCCAACTTCCGCCGCCGCTTCTCCTTCTTCGGCTTCAAAGAAACCCAAGCGGAAGAAGAAGAAGAACCTGTTCGAGGTGGCCCAGTTTCTTCCCAACTGGGGATTGGGGTACCAAATGGCTAAGACCCACTGGGTCGGCGTGTCTTACCAGATTACCAAAATCAATCTTTACAAGGATGGTAGACATGGCAAGGCATGGGGAATCGTTCATAAGGAAGGTCAGTGTTCAGCTTTACATTTCATGGAATTTGAACTTTTTCGTGTCCTCGGTTCAATTGAGTTTCATTTGTACCTGGGTTTACTTAAATGGGTTTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MRP-S34

Protein Analysis

140

Amino Acids

15.72

Weight (kDa)

10.19

Isoelectric Point (pI)

24.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009129)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52370 AT5G58990
fragaria_vesca	FvH4_3g37450
malus_domestica	MD03G1080100.v1.1 MD06G1146500.v1.1 MD11G1084700.v1.1
prunus_persica	Prupe.6G065000_v2.0.a1
pyrus_communis	pycom03g06410 pycom11g07320
rosa_chinensis	RchiOBHm_Chr5g0067341
rosa_laevigata	RLG00000035928
rosa_multiflora	Rmu_sc0042776.1_g000001 Rmu_ssc0000354.1_g000003
rosa_roxburghii	Rroxscaffold_1G00013740
rosa_rugosa	Rorug05G0384400
rosa_samantha	Rh2BG264800 Rh5AG443800 Rh5BG221200 Rh5BG460800 Rh5CG483100 Rh7BG147000
rosa_wichuraiana	Rw5G041450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	210
AccB1I	GGYRCC	1 cut(s)	210
AccI	GTMKAC	1 cut(s)	283
AciI	CCGC	5 cut(s)	90, 111, 114, 117, 151
AclWI	GGATC	1 cut(s)	42
AcsI	RAATTY	1 cut(s)	347
AcuI	CTGAAG	1 cut(s)	67
AfaI	GTAC	2 cut(s)	212, 392
AfiI	CCNNNNNNNGG	2 cut(s)	175, 200
AgsI	TTSAA	3 cut(s)	138, 353, 375
AjnI	CCWGG	1 cut(s)	393
AluBI	AGCT	3 cut(s)	69, 81, 332
AluI	AGCT	3 cut(s)	69, 81, 332
AlwI	GGATC	1 cut(s)	42
AoxI	GGCC	2 cut(s)	46, 180
ApoI	RAATTY	1 cut(s)	347
Asp700I	GAANNNNTTC	2 cut(s)	170, 357
Asp718I	GGTACC	1 cut(s)	210
AspS9I	GGNCC	1 cut(s)	181
BanI	GGYRCC	1 cut(s)	210
BccI	CCATC	1 cut(s)	272
BciT130I	CCWGG	1 cut(s)	395
BisI	GCNGC	2 cut(s)	114, 117
BlsI	GCNGC	2 cut(s)	115, 118
Bme1390I	CCNGG	1 cut(s)	395
BmgT120I	GGNCC	1 cut(s)	181
BmiI	GGNNCC	1 cut(s)	212
BmrFI	CCNGG	1 cut(s)	395
BmrI	ACTGGG	3 cut(s)	178, 208, 241
BmuI	ACTGGG	3 cut(s)	178, 208, 241
BpmI	CTGGAG	1 cut(s)	73
BsaJI	CCNNGG	2 cut(s)	367, 394
BsaWI	WCCGGW	1 cut(s)	41
Bsc4I	CCNNNNNNNGG	2 cut(s)	175, 200
Bse1I	ACTGG	3 cut(s)	184, 203, 236
BseBI	CCWGG	1 cut(s)	395
BseDI	CCNNGG	2 cut(s)	367, 394
BseGI	GGATG	1 cut(s)	283
BseLI	CCNNNNNNNGG	2 cut(s)	175, 200
BseMII	CTCAG	1 cut(s)	88
BseNI	ACTGG	3 cut(s)	184, 203, 236
BshFI	GGCC	2 cut(s)	48, 182
BshNI	GGYRCC	1 cut(s)	210
BsiSI	CCGG	1 cut(s)	42
BslI	CCNNNNNNNGG	2 cut(s)	175, 200
BsnI	GGCC	2 cut(s)	48, 182
Bsp143I	GATC	1 cut(s)	34
BspACI	CCGC	5 cut(s)	90, 111, 114, 117, 151
BspANI	GGCC	2 cut(s)	48, 182
BspCNI	CTCAG	1 cut(s)	87
BspLI	GGNNCC	1 cut(s)	212
BspPI	GGATC	1 cut(s)	42
BspT107I	GGYRCC	1 cut(s)	210
BsrI	ACTGG	3 cut(s)	184, 203, 236
BssECI	CCNNGG	2 cut(s)	367, 394
BssMI	GATC	1 cut(s)	34
Bst2UI	CCWGG	1 cut(s)	395
BstDEI	CTNAG	2 cut(s)	74, 222
BstENI	CCTNNNNNAGG	1 cut(s)	173
BstF5I	GGATG	1 cut(s)	283
BstKTI	GATC	1 cut(s)	37
BstMBI	GATC	1 cut(s)	34
BstMWI	GCNNNNNNNGC	1 cut(s)	23
BstNI	CCWGG	1 cut(s)	395
BstSCI	CCNGG	1 cut(s)	393
BsuRI	GGCC	2 cut(s)	48, 182
BtsCI	GGATG	1 cut(s)	283
BtsIMutI	CAGTG	2 cut(s)	229, 329
Cfr13I	GGNCC	1 cut(s)	181
Csp6I	GTAC	2 cut(s)	211, 391
CviAII	CATG	3 cut(s)	287, 297, 343
CviJI	RGCY	8 cut(s)	48, 58, 69, 81, 134, 182, 221, 332
CviKI_1	RGCY	8 cut(s)	48, 58, 69, 81, 134, 182, 221, 332
CviQI	GTAC	2 cut(s)	211, 391
DdeI	CTNAG	2 cut(s)	74, 222
DpnI	GATC	1 cut(s)	36
DpnII	GATC	1 cut(s)	34
EciI	GGCGGA	1 cut(s)	100
Eco147I	AGGCCT	1 cut(s)	48
Eco57I	CTGAAG	1 cut(s)	67
EcoNI	CCTNNNNNAGG	1 cut(s)	173
EcoRII	CCWGG	1 cut(s)	393
FaeI	CATG	3 cut(s)	290, 300, 346
FaiI	YATR	4 cut(s)	288, 298, 312, 344
FatI	CATG	3 cut(s)	286, 296, 342
FblI	GTMKAC	1 cut(s)	283
Fnu4HI	GCNGC	2 cut(s)	114, 117
FokI	GGATG	1 cut(s)	290
Fsp4HI	GCNGC	2 cut(s)	114, 117
GluI	GCNGC	2 cut(s)	114, 117
GsuI	CTGGAG	1 cut(s)	73
HaeIII	GGCC	2 cut(s)	48, 182
HapII	CCGG	1 cut(s)	42
Hin1II	CATG	3 cut(s)	290, 300, 346
HindIII	AAGCTT	1 cut(s)	79
HinfI	GANTC	1 cut(s)	303
HpaII	CCGG	1 cut(s)	42
Hpy166II	GTNNAC	3 cut(s)	284, 401, 415
Hpy188I	TCNGA	1 cut(s)	77
Hpy188III	TCNNGA	1 cut(s)	52
Hpy8I	GTNNAC	3 cut(s)	284, 401, 415
HpyAV	CCTTC	2 cut(s)	135, 311
HpyF10VI	GCNNNNNNNGC	1 cut(s)	23
HpyF3I	CTNAG	2 cut(s)	74, 222
Hsp92II	CATG	3 cut(s)	290, 300, 346
KpnI	GGTACC	1 cut(s)	214
Kzo9I	GATC	1 cut(s)	34
LpnPI	CCDG	9 cut(s)	37, 55, 182, 184, 197, 217, 263, 380, 407
MalI	GATC	1 cut(s)	36
MboI	GATC	1 cut(s)	34
MboII	GAAGA	6 cut(s)	120, 166, 169, 172, 175, 182
MfeI	CAATTG	1 cut(s)	375
MluCI	AATT	2 cut(s)	347, 375
MnlI	CCTC	6 cut(s)	38, 48, 59, 83, 169, 377
MroXI	GAANNNNTTC	2 cut(s)	170, 357
MseI	TTAA	2 cut(s)	29, 405
MspI	CCGG	1 cut(s)	42
MspR9I	CCNGG	1 cut(s)	395
MunI	CAATTG	1 cut(s)	375
MvaI	CCWGG	1 cut(s)	395
MwoI	GCNNNNNNNGC	1 cut(s)	23
NdeII	GATC	1 cut(s)	34
NlaIII	CATG	3 cut(s)	290, 300, 346
NlaIV	GGNNCC	1 cut(s)	212
PceI	AGGCCT	1 cut(s)	48
PdmI	GAANNNNTTC	2 cut(s)	170, 357
PfeI	GAWTC	1 cut(s)	303
PkrI	GCNGC	2 cut(s)	115, 118
Psp6I	CCWGG	1 cut(s)	393
PspGI	CCWGG	1 cut(s)	393
PspN4I	GGNNCC	1 cut(s)	212
PspPI	GGNCC	1 cut(s)	181
RsaI	GTAC	2 cut(s)	212, 392
RsaNI	GTAC	2 cut(s)	211, 391
SaqAI	TTAA	2 cut(s)	29, 405
SatI	GCNGC	2 cut(s)	114, 117
Sau3AI	GATC	1 cut(s)	34
Sau96I	GGNCC	1 cut(s)	181
ScrFI	CCNGG	1 cut(s)	395
SetI	ASST	7 cut(s)	71, 83, 171, 180, 322, 334, 396
Sse9I	AATT	2 cut(s)	347, 375
SseBI	AGGCCT	1 cut(s)	48
SsiI	CCGC	5 cut(s)	90, 111, 114, 117, 151
StuI	AGGCCT	1 cut(s)	48
StyD4I	CCNGG	1 cut(s)	393
TaqI	TCGA	3 cut(s)	37, 65, 174
TasI	AATT	2 cut(s)	347, 375
TauI	GCSGC	2 cut(s)	116, 119
TfiI	GAWTC	1 cut(s)	303
Tru1I	TTAA	2 cut(s)	29, 405
Tru9I	TTAA	2 cut(s)	29, 405
TscAI	CASTG	2 cut(s)	236, 329
TspDTI	ATGAA	3 cut(s)	299, 331, 374
TspGWI	ACGGA	1 cut(s)	47
TspRI	CASTG	2 cut(s)	236, 329
XagI	CCTNNNNNAGG	1 cut(s)	173
XapI	RAATTY	1 cut(s)	347
XcmI	CCANNNNNNNNNTGG	1 cut(s)	202
XmiI	GTMKAC	1 cut(s)	283
XmnI	GAANNNNTTC	2 cut(s)	170, 357

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.