Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0009129

Physical Location & Seq

Genomic Coordinates Reverse (-)

73594544 .. 73595946

Gene Structure 1403 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000035928

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGGCGAGCAGTCTCGCACAGAGAGCAGTGACGGATCGAACAGTAGGGTTATTGAGGTTCACGTCGAGCTTCGTCAGAAGCTTCAGCACCGCTTCGCCAAACCCTACTGACGCCGCCGCCGCTGCTGGTTCTTCTCCGGTGGCCACTAAGCCGAAGAAGAGAAAGAAGAAGAACCTGCTTTGCTATAAAGTTAATATAGTAGAATATGTTGCAGGCTTGCCAGCTGCAGATGCTCCCAAGAAAATAAGTGGAGTCCACAAGCGCGGTTGGAGGTACATTCCAAGCTTATCTAAGTCGACTGAAAGTGTTCCAAGTATGACTAAACCAACAGAAACTGCTCCAGCAACACCTGAAGTTCAACCAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MRP-S34

Protein Analysis

123

Amino Acids

12.93

Weight (kDa)

10.29

Isoelectric Point (pI)

55.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009129)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52370 AT5G58990
fragaria_vesca	FvH4_3g37450
malus_domestica	MD03G1080100.v1.1 MD06G1146500.v1.1 MD11G1084700.v1.1
prunus_persica	Prupe.6G065000_v2.0.a1
pyrus_communis	pycom03g06410 pycom11g07320
rosa_chinensis	RchiOBHm_Chr5g0067341
rosa_laevigata	RLG00000035928
rosa_multiflora	Rmu_sc0042776.1_g000001 Rmu_ssc0000354.1_g000003
rosa_roxburghii	Rroxscaffold_1G00013740
rosa_rugosa	Rorug05G0384400
rosa_samantha	Rh2BG264800 Rh5AG443800 Rh5BG221200 Rh5BG460800 Rh5CG483100 Rh7BG147000
rosa_wichuraiana	Rw5G041450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	183
AccI	GTMKAC	1 cut(s)	296
AccII	CGCG	1 cut(s)	264
AciI	CCGC	5 cut(s)	90, 114, 117, 120, 264
AclWI	GGATC	1 cut(s)	42
AcoI	YGGCCR	1 cut(s)	141
AcuI	CTGAAG	1 cut(s)	67
AcyI	GRCGYC	1 cut(s)	111
AfaI	GTAC	1 cut(s)	275
AgsI	TTSAA	1 cut(s)	359
AjiI	CACGTC	1 cut(s)	63
AluBI	AGCT	5 cut(s)	69, 81, 224, 285, 365
AluI	AGCT	5 cut(s)	69, 81, 224, 285, 365
Alw26I	GTCTC	1 cut(s)	17
AlwI	GGATC	1 cut(s)	42
AlwNI	CAGNNNCTG	1 cut(s)	335
AoxI	GGCC	1 cut(s)	141
ApeKI	GCWGC	2 cut(s)	122, 224
Asp700I	GAANNNNTTC	1 cut(s)	306
AspLEI	GCGC	1 cut(s)	264
BalI	TGGCCA	1 cut(s)	143
BbvI	GCAGC	2 cut(s)	109, 211
BcoDI	GTCTC	1 cut(s)	17
BfmI	CTRYAG	1 cut(s)	225
BfuAI	ACCTGC	1 cut(s)	183
BisI	GCNGC	5 cut(s)	114, 117, 120, 123, 225
BlsI	GCNGC	5 cut(s)	115, 118, 121, 124, 226
BmgBI	CACGTC	1 cut(s)	63
BmsI	GCATC	1 cut(s)	220
BpmI	CTGGAG	1 cut(s)	324
BsaHI	GRCGYC	1 cut(s)	111
BsaWI	WCCGGW	1 cut(s)	136
BseXI	GCAGC	2 cut(s)	109, 211
Bsh1236I	CGCG	1 cut(s)	264
BshFI	GGCC	1 cut(s)	143
BsiSI	CCGG	1 cut(s)	137
BsmAI	GTCTC	1 cut(s)	17
BsnI	GGCC	1 cut(s)	143
Bsp143I	GATC	1 cut(s)	34
BspACI	CCGC	5 cut(s)	90, 114, 117, 120, 264
BspANI	GGCC	1 cut(s)	143
BspFNI	CGCG	1 cut(s)	264
BspMAI	CTGCAG	1 cut(s)	229
BspMI	ACCTGC	1 cut(s)	183
BspPI	GGATC	1 cut(s)	42
BssMI	GATC	1 cut(s)	34
BssNI	GRCGYC	1 cut(s)	111
Bst4CI	ACNGT	1 cut(s)	43
Bst6I	CTCTTC	1 cut(s)	152
BstACI	GRCGYC	1 cut(s)	111
BstC8I	GCNNGC	4 cut(s)	7, 214, 218, 222
BstDEI	CTNAG	2 cut(s)	147, 291
BstFNI	CGCG	1 cut(s)	264
BstHHI	GCGC	1 cut(s)	264
BstKTI	GATC	1 cut(s)	37
BstMAI	GTCTC	1 cut(s)	17
BstMBI	GATC	1 cut(s)	34
BstMWI	GCNNNNNNNGC	4 cut(s)	23, 119, 122, 230
BstSFI	CTRYAG	1 cut(s)	225
BstUI	CGCG	1 cut(s)	264
BstV1I	GCAGC	2 cut(s)	109, 211
BsuRI	GGCC	1 cut(s)	143
BtrI	CACGTC	1 cut(s)	63
BtsI	GCAGTG	1 cut(s)	33
BtsIMutI	CAGTG	1 cut(s)	33
BveI	ACCTGC	1 cut(s)	183
Cac8I	GCNNGC	4 cut(s)	7, 214, 218, 222
CaiI	CAGNNNCTG	1 cut(s)	335
CfoI	GCGC	1 cut(s)	264
CseI	GACGC	1 cut(s)	119
Csp6I	GTAC	1 cut(s)	274
CviJI	RGCY	8 cut(s)	69, 81, 143, 151, 216, 224, 285, 365
CviKI_1	RGCY	8 cut(s)	69, 81, 143, 151, 216, 224, 285, 365
CviQI	GTAC	1 cut(s)	274
DdeI	CTNAG	2 cut(s)	147, 291
DpnI	GATC	1 cut(s)	36
DpnII	GATC	1 cut(s)	34
EaeI	YGGCCR	1 cut(s)	141
Eam1104I	CTCTTC	1 cut(s)	152
EarI	CTCTTC	1 cut(s)	152
Eco57I	CTGAAG	1 cut(s)	67
FaiI	YATR	4 cut(s)	186, 197, 207, 317
FblI	GTMKAC	1 cut(s)	296
Fnu4HI	GCNGC	5 cut(s)	114, 117, 120, 123, 225
Fsp4HI	GCNGC	5 cut(s)	114, 117, 120, 123, 225
GlaI	GCGC	1 cut(s)	263
GluI	GCNGC	5 cut(s)	114, 117, 120, 123, 225
GsuI	CTGGAG	1 cut(s)	324
HaeIII	GGCC	1 cut(s)	143
HapII	CCGG	1 cut(s)	137
HgaI	GACGC	1 cut(s)	119
HhaI	GCGC	1 cut(s)	264
Hin1I	GRCGYC	1 cut(s)	111
Hin6I	GCGC	1 cut(s)	262
HinP1I	GCGC	1 cut(s)	262
HincII	GTYRAC	1 cut(s)	297
HindII	GTYRAC	1 cut(s)	297
HindIII	AAGCTT	2 cut(s)	79, 283
HinfI	GANTC	1 cut(s)	252
HpaII	CCGG	1 cut(s)	137
Hpy166II	GTNNAC	3 cut(s)	60, 256, 297
Hpy188I	TCNGA	1 cut(s)	77
Hpy8I	GTNNAC	3 cut(s)	60, 256, 297
Hpy99I	CGWCG	1 cut(s)	67
HpyCH4III	ACNGT	1 cut(s)	43
HpyCH4IV	ACGT	1 cut(s)	62
HpyCH4V	TGCA	2 cut(s)	212, 227
HpyF10VI	GCNNNNNNNGC	4 cut(s)	23, 119, 122, 230
HpyF3I	CTNAG	2 cut(s)	147, 291
HpySE526I	ACGT	1 cut(s)	62
Hsp92I	GRCGYC	1 cut(s)	111
HspAI	GCGC	1 cut(s)	262
Kzo9I	GATC	1 cut(s)	34
LmnI	GCTCC	2 cut(s)	238, 343
LpnPI	CCDG	7 cut(s)	111, 150, 188, 198, 234, 354, 363
Lsp1109I	GCAGC	2 cut(s)	109, 211
LweI	GCATC	1 cut(s)	220
MaeII	ACGT	1 cut(s)	62
MaeIII	GTNAC	1 cut(s)	28
MalI	GATC	1 cut(s)	36
MboI	GATC	1 cut(s)	34
MboII	GAAGA	5 cut(s)	123, 166, 169, 178, 181
MlsI	TGGCCA	1 cut(s)	143
MluNI	TGGCCA	1 cut(s)	143
MlyI	GAGTC	1 cut(s)	261
MmeI	TCCRAC	1 cut(s)	248
MnlI	CCTC	2 cut(s)	48, 264
Mox20I	TGGCCA	1 cut(s)	143
MroXI	GAANNNNTTC	1 cut(s)	306
MscI	TGGCCA	1 cut(s)	143
MseI	TTAA	1 cut(s)	192
Msp20I	TGGCCA	1 cut(s)	143
MspA1I	CMGCKG	2 cut(s)	122, 224
MspI	CCGG	1 cut(s)	137
MvnI	CGCG	1 cut(s)	264
MwoI	GCNNNNNNNGC	4 cut(s)	23, 119, 122, 230
NdeII	GATC	1 cut(s)	34
NmuCI	GTSAC	1 cut(s)	28
PdmI	GAANNNNTTC	1 cut(s)	306
PkrI	GCNGC	5 cut(s)	115, 118, 121, 124, 226
PleI	GAGTC	1 cut(s)	260
PpsI	GAGTC	1 cut(s)	260
PstI	CTGCAG	1 cut(s)	229
PstNI	CAGNNNCTG	1 cut(s)	335
PvuII	CAGCTG	1 cut(s)	224
RsaI	GTAC	1 cut(s)	275
RsaNI	GTAC	1 cut(s)	274
SalI	GTCGAC	1 cut(s)	295
SaqAI	TTAA	1 cut(s)	192
SatI	GCNGC	5 cut(s)	114, 117, 120, 123, 225
Sau3AI	GATC	1 cut(s)	34
SchI	GAGTC	1 cut(s)	261
SfaNI	GCATC	1 cut(s)	220
SfcI	CTRYAG	1 cut(s)	225
SsiI	CCGC	5 cut(s)	90, 114, 117, 120, 264
TaaI	ACNGT	1 cut(s)	43
TaiI	ACGT	1 cut(s)	65
TaqI	TCGA	3 cut(s)	37, 65, 296
TauI	GCSGC	3 cut(s)	116, 119, 122
Tru1I	TTAA	1 cut(s)	192
Tru9I	TTAA	1 cut(s)	192
TscAI	CASTG	1 cut(s)	33
TseFI	GTSAC	1 cut(s)	28
TseI	GCWGC	2 cut(s)	122, 224
Tsp45I	GTSAC	1 cut(s)	28
TspGWI	ACGGA	1 cut(s)	47
TspRI	CASTG	1 cut(s)	33
XmiI	GTMKAC	1 cut(s)	296
XmnI	GAANNNNTTC	1 cut(s)	306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.